Lsi06G006090 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGCTTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAAGTTGGCCTTGGAGCATAGAATGGAATTTGCAGAGGCATATGGGAACATCGCAGATCTCATGTATACAAACATCAACACACAGGCATTGCAAGCTCTGGCACACTTTTGGGATCCTATGTTGAAATGCTTCACGTTCAATACATTTGACTTAACCCCCACCATAGAAGAATATCGAGCTCTCCTTAGCATACCACCTTGCATCGGTAGTAAGGTTTATGTTTATGATCGAAAGCTGACTATGCAGAGGTCATTGTCCAAGTTTTTGGGAGATGTGCATGCCTCTGATATAAAGAAGCAGACGAAGATGAAAGGGGGAAGGAGTTGTATCCCTATTGATTATTTGATTGGTCTTGCACGTGCATTCTTACCTGGGAAGAAGGGCTTGTCGCTCTTGGCATTATGCATTTATGGTATGGTTATCTTTCCAAGAATTAAAGGCTACGTAGAAGAAGAAGTCGTTAAGCTCTTCATTGGAATAAAAAGAGGCGTGAACCCTGTTATCCCAATTATGGCAGAAACCTTTAGATCATTAAACTACTGCCGAGTCCAAGGGAAGGGAAAGTTTTTCAGTTGCGCCCCAATGTTGTTCATATGACTTTCCAGTCATCTGAGGTATCCTGCTGGGTTTGGGTATTCCCAGATAAAGTTTAGTAGCCCATGGAACACCACAAGAAACACTATCAGAGATTTCAATGCCGCACGCTGGAGTTCAGACGTTCCGAATCGCGAAATTTGGATGCATTTTTTAGGCAACCTAACATCCGATGAGGTAATCTGGAGGGCACCATGGTTACCCACAAGTCCTTTAACATACCGTTGTGGGCAGTTACCATTCATCCCATTATTAGGTCTGTGGGGAGGAATTGTCTACTCTCCCCTTTTGGTTCTACGTCAGCTATGGTCAAAGCAATTCACACCATTTGTCCATGGTTTAGAAGATTGGGATTTCTTGTACGAATCTGATGAAACTAGTGTCAAGGTTCATAAAGCAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCTATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAATGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAGAAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAGTTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGCTTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAATGTCAAGGTTCATAAAGCAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCTATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAATGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAGAAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAGTTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGCTTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAATGTCAAGGTTCATAAAGCAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCTATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAATGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAGAAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAGTTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA MVDTHAPEVFAQTIPSEDSWEGVAQWSEQLQQESGFAWPRRSEVSLLQSPRLEFVNNDSEDLKGLWENVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAEH
BLAST of Lsi06G006090 vs. TrEMBL
Match: A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 6.7e-30 Identity = 82/128 (64.06%), Postives = 106/128 (82.81%), Query Frame = 1
BLAST of Lsi06G006090 vs. TrEMBL
Match: A0A0A0LTS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328370 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14 Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
BLAST of Lsi06G006090 vs. TrEMBL
Match: A0A0A0KP72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528450 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06 Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|700210231|gb|KGN65327.1| (hypothetical protein Csa_1G328390 [Cucumis sativus]) HSP 1 Score: 139.4 bits (350), Expect = 9.7e-30 Identity = 82/128 (64.06%), Postives = 106/128 (82.81%), Query Frame = 1
BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo]) HSP 1 Score: 123.2 bits (308), Expect = 7.2e-25 Identity = 84/162 (51.85%), Postives = 112/162 (69.14%), Query Frame = 1
BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|700210229|gb|KGN65325.1| (hypothetical protein Csa_1G328370 [Cucumis sativus]) HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14 Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1
BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|659131250|ref|XP_008465588.1| (PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo]) HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11 Identity = 69/267 (25.84%), Postives = 130/267 (48.69%), Query Frame = 1
BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|700196231|gb|KGN51408.1| (hypothetical protein Csa_5G528450 [Cucumis sativus]) HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06 Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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