Lsi06G006090 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G006090
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 8457771 .. 8459609 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGCTTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAAGTTGGCCTTGGAGCATAGAATGGAATTTGCAGAGGCATATGGGAACATCGCAGATCTCATGTATACAAACATCAACACACAGGCATTGCAAGCTCTGGCACACTTTTGGGATCCTATGTTGAAATGCTTCACGTTCAATACATTTGACTTAACCCCCACCATAGAAGAATATCGAGCTCTCCTTAGCATACCACCTTGCATCGGTAGTAAGGTTTATGTTTATGATCGAAAGCTGACTATGCAGAGGTCATTGTCCAAGTTTTTGGGAGATGTGCATGCCTCTGATATAAAGAAGCAGACGAAGATGAAAGGGGGAAGGAGTTGTATCCCTATTGATTATTTGATTGGTCTTGCACGTGCATTCTTACCTGGGAAGAAGGGCTTGTCGCTCTTGGCATTATGCATTTATGGTATGGTTATCTTTCCAAGAATTAAAGGCTACGTAGAAGAAGAAGTCGTTAAGCTCTTCATTGGAATAAAAAGAGGCGTGAACCCTGTTATCCCAATTATGGCAGAAACCTTTAGATCATTAAACTACTGCCGAGTCCAAGGGAAGGGAAAGTTTTTCAGTTGCGCCCCAATGTTGTTCATATGACTTTCCAGTCATCTGAGGTATCCTGCTGGGTTTGGGTATTCCCAGATAAAGTTTAGTAGCCCATGGAACACCACAAGAAACACTATCAGAGATTTCAATGCCGCACGCTGGAGTTCAGACGTTCCGAATCGCGAAATTTGGATGCATTTTTTAGGCAACCTAACATCCGATGAGGTAATCTGGAGGGCACCATGGTTACCCACAAGTCCTTTAACATACCGTTGTGGGCAGTTACCATTCATCCCATTATTAGGTCTGTGGGGAGGAATTGTCTACTCTCCCCTTTTGGTTCTACGTCAGCTATGGTCAAAGCAATTCACACCATTTGTCCATGGTTTAGAAGATTGGGATTTCTTGTACGAATCTGATGAAACTAGTGTCAAGGTTCATAAAGCAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCTATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAATGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAGAAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAGTTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA

mRNA sequence

ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGCTTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAATGTCAAGGTTCATAAAGCAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCTATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAATGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAGAAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAGTTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA

Coding sequence (CDS)

ATGGTAGACACTCATGCGCCCGAGGTATTCGCCCAAACCATCCCTAGCGAAGACTCGTGGGAGGGTGTGGCACAATGGTCAGAGCAACTTCAACAAGAGTCAGGATTCGCTTGGCCTAGGAGGTCCGAGGTTTCACTTTTGCAGTCTCCTCGATTAGAGTTTGTTAATAATGATTCAGAAGATCTAAAGGGATTATGGGAGAATGTCAAGGTTCATAAAGCAGTGGAAGCGTGGAAATTGGTCAAAAGAATGAAGAGCCCACGACATTGCGAGGGCACCACAGCACAGTATGACAATTGGAGAGCAACTAGAAGTGGAGTCGAAGTTGCTATTATGCAGAGGTCATTGAATTCGAACAGAACTTCAAACGTAGGTCATAACAACCGAGAAAAGGATTTGGAGCGGTTGAAGGAGATGAACCAAGTCCTAGCAACAGAAAATGAAGAGTTGAGGAAAGAGGTTAAAAGATTGGGCCAGCAAGCTACTAGTGCCCAGAGGCAATTGGAGGATGCAAAGCGGTGTCTCCAAAAGCAACCAGAGTTGGAGAGAGAAAGAGATTCTTTGAACATTGAAGCAATCCAGATGAAAAAGAAGAACAAGAGATTATTGGGAGATATTGCTGTTTTGCATAATGAGGCAGAAGCACAAAACAAGTACATTAAAGAGCTAAAACAGGAGTTGGAGAGAATGAACAAAGTTGCTGCAAGTTTCCAGAGTGCCTTAAGTGAGAAGGCCGCATCATCCCAGAAGATCGTTGCAGAGGTTGAGAGTTTACAGAGTTCAGCCAAAATATACAAATCCCAACTGACTGAGGCAGAACACAAAAACATGCTTCTTCAGGAGGCTGTTACAAATGCTGAACACTAA

Protein sequence

MVDTHAPEVFAQTIPSEDSWEGVAQWSEQLQQESGFAWPRRSEVSLLQSPRLEFVNNDSEDLKGLWENVKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNRTSNVGHNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAEH
BLAST of Lsi06G006090 vs. TrEMBL
Match: A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.7e-30
Identity = 82/128 (64.06%), Postives = 106/128 (82.81%), Query Frame = 1

Query: 139 MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKK 198
           M+ VLATENE LRKEVKR  Q+AT+++RQLE+A+R LQ+Q ELE++ +SLNIEAIQ++KK
Sbjct: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 199 NKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESL 258
           NKRLL DIA +H+EAEAQ   I+ELKQELER++KV   FQSAL E+A SSQ+I  ++E+L
Sbjct: 61  NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTKMEAL 120

Query: 259 QSSAKIYK 267
            + AK YK
Sbjct: 121 DNLAKEYK 128

BLAST of Lsi06G006090 vs. TrEMBL
Match: A0A0A0LTS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328370 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1

Query: 1  MVDTHAPEVFAQTIPSEDSWEGVAQWSEQLQQESGFAWPRRSEVSLLQSPRLEFVNNDSE 60
          M+ TH+P + AQ  PSEDSWEG+ QW E+LQQE+   WP+  E+SL Q+ RLE VNN  E
Sbjct: 1  MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61 DLKGLWENVKVHKAVEAWKLVKRM 85
           LK LWE++     +E  K  + +
Sbjct: 61 GLKSLWESLTKEHRIEFVKAYRNI 84

BLAST of Lsi06G006090 vs. TrEMBL
Match: A0A0A0KP72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528450 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 69  VKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVA 111
           VKV + +E WK+V+R+KS RHC+GTT QYD WRA R+G E A
Sbjct: 72  VKVQEVIETWKVVRRLKSLRHCKGTTNQYDIWRADRNGFEFA 113

BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|700210231|gb|KGN65327.1| (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 9.7e-30
Identity = 82/128 (64.06%), Postives = 106/128 (82.81%), Query Frame = 1

Query: 139 MNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKK 198
           M+ VLATENE LRKEVKR  Q+AT+++RQLE+A+R LQ+Q ELE++ +SLNIEAIQ++KK
Sbjct: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 199 NKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESL 258
           NKRLL DIA +H+EAEAQ   I+ELKQELER++KV   FQSAL E+A SSQ+I  ++E+L
Sbjct: 61  NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTKMEAL 120

Query: 259 QSSAKIYK 267
            + AK YK
Sbjct: 121 DNLAKEYK 128

BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 7.2e-25
Identity = 84/162 (51.85%), Postives = 112/162 (69.14%), Query Frame = 1

Query: 126 HNNREKDLERLKEMNQVLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERER 185
           ++++EK+L+RL+EMN VLATENE+LR+EVK+  QQA + QR L++AKR   K+ ELE+E 
Sbjct: 14  YHDQEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKR---KRLELEKEN 73

Query: 186 DSLNIEAIQMKKKNKRLLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKA 245
           DSLN EAIQ++KKNKRLL +IA LH E EA+ +                  FQ+AL E+A
Sbjct: 74  DSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKE------------------FQNALHEQA 133

Query: 246 ASSQKIVAEVESLQSSAKIYKSQLTEAEHKNMLLQEAVTNAE 288
            SSQ+    +E LQ S + YKSQL EAE KN  LQ+AV ++E
Sbjct: 134 ISSQQTAMGIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSE 154

BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|700210229|gb|KGN65325.1| (hypothetical protein Csa_1G328370 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1

Query: 1  MVDTHAPEVFAQTIPSEDSWEGVAQWSEQLQQESGFAWPRRSEVSLLQSPRLEFVNNDSE 60
          M+ TH+P + AQ  PSEDSWEG+ QW E+LQQE+   WP+  E+SL Q+ RLE VNN  E
Sbjct: 1  MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61 DLKGLWENVKVHKAVEAWKLVKRM 85
           LK LWE++     +E  K  + +
Sbjct: 61 GLKSLWESLTKEHRIEFVKAYRNI 84

BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|659131250|ref|XP_008465588.1| (PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 69/267 (25.84%), Postives = 130/267 (48.69%), Query Frame = 1

Query: 23  VAQWSEQLQQESGFAWPRRSEVSLLQSPRLEFVNNDSEDLKGLWENVKVHKAVEAWKLVK 82
           V +W+E++QQ  G   P       LQ     +  N+ +  K         +AV AWK ++
Sbjct: 17  VLKWAEEMQQNLGTFIPPTHN---LQESDFSYDPNNCQGKK--------RQAVCAWKSIR 76

Query: 83  RMKSPRHCEGTTAQYDNWRATRSGVEVAIMQRSLNSNR-TSNVGHNNREKDLERLKEMNQ 142
           ++K   H EG T++Y+ W+A R    + I +  +   + TS    N R +   +LKE N+
Sbjct: 77  KIKDKGHYEGVTSEYETWQANRRNNIIDISREVVERGKETSFEQPNQRIEKSIKLKEKNR 136

Query: 143 VLATENEELRKEVKRLGQQATSAQRQLEDAKRCLQKQPELERERDSLNIEAIQMKKKNKR 202
           +L  ENE+LRKE  +    AT  Q +LE  K  L+ Q +LE++ ++ + E  +M K N+ 
Sbjct: 137 LLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLEKDLETSDKEMRRMNKANRS 196

Query: 203 LLGDIAVLHNEAEAQNKYIKELKQELERMNKVAASFQSALSEKAASSQKIVAEVESLQSS 262
           L  +   L     ++++YIK+L+   E   ++     +++ ++      + A+  SL+ +
Sbjct: 197 LKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQNHSLRQT 256

Query: 263 AKIYKSQLTEAEHKNMLLQEAVTNAEH 289
                 ++ E   +  +L+  V +  +
Sbjct: 257 VDNLHLKMAERSEEYEILKNYVDSLHY 272

BLAST of Lsi06G006090 vs. NCBI nr
Match: gi|700196231|gb|KGN51408.1| (hypothetical protein Csa_5G528450 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1

Query: 69  VKVHKAVEAWKLVKRMKSPRHCEGTTAQYDNWRATRSGVEVA 111
           VKV + +E WK+V+R+KS RHC+GTT QYD WRA R+G E A
Sbjct: 72  VKVQEVIETWKVVRRLKSLRHCKGTTNQYDIWRADRNGFEFA 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWU7_CUCSA6.7e-3064.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1[more]
A0A0A0LTS2_CUCSA1.0e-1448.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328370 PE=4 SV=1[more]
A0A0A0KP72_CUCSA1.8e-0661.90Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528450 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700210231|gb|KGN65327.1|9.7e-3064.06hypothetical protein Csa_1G328390 [Cucumis sativus][more]
gi|659128749|ref|XP_008464352.1|7.2e-2551.85PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis... [more]
gi|700210229|gb|KGN65325.1|1.5e-1448.81hypothetical protein Csa_1G328370 [Cucumis sativus][more]
gi|659131250|ref|XP_008465588.1|2.0e-1125.84PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo][more]
gi|700196231|gb|KGN51408.1|2.6e-0661.90hypothetical protein Csa_5G528450 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006090.1Lsi06G006090.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 255..288
score: -coord: 126..174
score: -coord: 206..240
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None