Lsi06G006070 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Serine/arginine-rich splicing factor 12
Location	chr06 : 8420751 .. 8430594 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCGCTACGTTCCGCGCCTTTTTATATTTTGTTGTATTTATTTATGTACAGCGAAAATCTGATGCCCTAAACTTACAAATCTGAGGCAACGCCGTCTGTTTCTCCACCGAAGATTTCAATTTCATCTTCAAGCCCTAATTTCTTCTTTCTCTGCCGCCGATTCAACCTCTCTTCAAGGTCTCTCTCTTTCACCCTCTCTTTCAAGCATTGACATTCACATAATTACTGTGCTTTCTTCTATCGATCTGTTCCCGCTTCACTATTTTCAGCTAATTTTCCCAATTTTTGACCTGTAATTTCGTATGCCATAATGGGATTCATCAAGTTAATGTTTCTTGTTTTGTGGTAGCCGAGTACTTCGATTTCTGTCGTCGATTTCAGTATAAAAGAAACGATTTTGGATCAATTCTGCTGCCTTGAGAATTTGTCATTACATGTTTGAATATTCTTCAATGGTTCACTTTTCTTCACTTGCACAGCTGCAGCGAGATTCTTAGACACCGGGCCTTTGTCATTGGTTGCTGTAATCATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGTAGAAGGGGTCGAAGCCCTAGCCCGAGAGGGCGCTACGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGTTTGTTCTTTATGAGTTTGTTCTGTAGTTATGCTCATGTTTCTATTTGCCTTCAAAGTTCTTTCCGTTTGGTGTGACCAATTTTCTTACCCTAGAAAGTCTGTAGGAGGAAGAGTGGTCGTTTTATTTGACTTTGTTTTGATAGTAGACAGATCTTTGTACAACAGAGGTGCATAGATAGGGGGAATAACGCATCACATAGTCTAAGGCAGTTAAAAAGGGCTTTCTCGCAAAGCATTTGAATTTTATAATAATAATGAAATTTCCTATTCCGAGAACTATGAAAGAAACAAAATGCAATGGGCCAAAGAACTTTTGATAGTCCCTTCTATTTCTTTATAGCCTACAAAGTATCTTAAGGCCGCTCCCTTCACTTGGGGCAGGGCACTCACCCCTCAGTAGTGCTTTGTTGTGCTGTGCCTCGGGATTAATTGTACCTGCTTTCCACGTTTTGTCGCCTTCTTTGGAAAGCTATTGTTATATCTTTCAAGAATCTCGTGAAAAAGCTCCCAAGTTTACAAATTTTTTTAAGTGAAATTTTTGTTCATAATTCTGTTTGATTTTTATATGATAAATTTTGTTCTGAACGTTTGCAAACTTAGTTCTTCTTAACCTCATGCCTAGGCTTTGGAGATTCGTTGCAATGATACTAAGCATGCCTCACACTGTCAAAATGCTGTATGACCCTATACATAGCGTGAATTCCACCACATTAGTCTGCCTTTTTTTTTTCCGCCTAGGATAGAAGCCGAGTAATAGTAATTCAGTGGATTTTCTTTCATTTTCCTTCTCCCTTGCGGTGCATCAATGACTCAGTTTTGACCTGCATCCAGTAAATGAGAAAAGACCTTCGGTGTCTGAATATAATAATTTAATCTGGTTTCATTCTTGCACGATCTTGTTCTGATTTGTAAGTTGCTTTGAGTTTCTGTGTAGTTTGTGATTTGGAATGGATCTCTATATCACTGTTTGTGTTCTGGTACTACTTTTTTTAACTGCATACTCTTTTCTTAAAATACATTTACTGCATACTGCTATTCTTCGTAGTTTGCTGATCAAATATATTGAGTGCTGTTTAATAATCAATTTAGAGCAAGAATATGATGAAACCTGGTCTACCACTAATTTGAATTTATTTTTTTACACAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCAAAGGATTATTATACTGGGTGAGCATGTCTGAGCTGTATATAGGACTTGCGGATTCTTTGGTACTGGTGTTTTTTAAAAAAAGAAATTAGCAAAAATATAATTTAATAATTTGTGCACATGGTTTTTGATTAATTCTGTAAAATTTATACCACATTTTTAGGCTCTGATAAATGTTTGATGTAATATATTTTCTTTGTTGCTTTCTTAAATTGGTTTAGAATTAATGGTATTAGAGAAAGCATATTTTCATTAATTTCCTTGCTTCTTTTGAACAAAATGTTTTTAGCACAATCCTTGGTAAAAGTCATTGCTGAAGTAGATCCTTCTTAGTGTTTCATCTTTCAAATTATGCATCTGATTATAGGGGCATTTCTTTCTGTTTCTTCTATTCTTTTTGTTTTTCCTTATCACATATTAGGTCTGTTTTTTGAATGTTTGAAGATTTAACAGTGAAACTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTTGAATACATAGAAGATGTTCCCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACGCATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATCACAGACCTTCCATATTGCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTATGGCAGGCCAAGTACCTGTCCTGATTCTGTGGATTTACTTTAACTTTTGTTTTATAACTTTTTCCCTTTTGCTTCTTTTGTGCATCAATTTTTGCAGAGAACCACGTGGTTTTGGCTTTGTTCAATATGTAGATCCTGCTGATGCTGCTGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGGTATGAAGCTGCCTTCCGTCATATTTGGGATACTTTATAGACATGAATGTTTGTAAATTAAGTGTCAAATTATCTGTTGCATTTGCATATGCATATGCACATGTTTTCCAACACTTCTCAAGGGAGTTTGGGATAGCTTTTGACAACAAGTTCTAACACTAATCACGTGCTTGGAAAAGCACTTTAAGTATTCTTTTTAGTACTGTTTGGAATCACTTAAAACTATTGAACTGAATACTGTGGAAGATCTGGAAAGTGACTTTTATTAGGCCGAAAGCACTCATCATATTAATTGGGTTACAGTTCAGTATTGCATCTGTTAAACAAAATTAATAATTTCAGCCATACAAACAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCCACGGTATTCTCGTTCGCCTCGATATTCTCGTTCCCCAGCTCAACGTCATGCGAAGTATTCCCGTTCACCAGCTCCACGGGATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCTCTGCCAACAAAACAAAGGGCTTACTCAAGGTATTTTTTTTAAGCTATTGCTATTTGATATCTAGTTCTTATTATGTATAATGTCTTGGTGAACCCTTTTTTGAGCCTCAATTGTTTCTATATGGCAATGCAGATCAGTGTCCCCTGGTGACAGACCGGATAGTCGAGAGAGGTCTTTCCCACGACAACAGAGCCGTGGTAGGTCATACTCTCGATCTCCACGTCTCGATGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCTGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCAAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAAGTCAATAGGCAAACAGTTTGAAACTTGGGAAGAACAACTACAATGTGTACTATTTTGCCATTATTTAGTTGGATGTTTCCGTTATAGACATCATTTCGTTAGTATTGCTGAGTAGCGTTTGTTTGTTGTTAGGATTTTATGCGTTATCAAATTGATTGTTGGGTACTTTTTCTTTTATTGCTTTCTTTCGTGGTGTGATGAAACTTTAGAATAATACATTTCGCCCTCTTATTTGATATAGTTTTCTTTTGAAAATATCATATTATGTCATAAATTAGGGTGTGGGATTTAAAGTTTCTAGATGAAAGATGTGTACTTCCTATATGTTCGAGCAGTAATTTTTTAAAAAAAATATTGCAAGTTTGATAACTTTTTATAAAGGTATATAAATCCTTTAAACTTACTAACCAAGAGTTTATATTTGTTTAAAAGAATAATAAAAGAAAAAGATCACAGGTCGAAGATGTGATCTTTTTATTTCTCAATGCGAATTTACCATGGGTGGCATTTTTTTTTTAATTTTATTTTAGAGAAGATTTTATTTAAATTTAAAAAAGATTTGAATTTGGAGAAAAAAAATTGATTTAAATTTAAAAGAGATATGAATTTAAAAAGAATTTGATTTAAATTCAAAACTCTCCAGTCGATATCTTTTTCTTTTTTCACCCTTTTATTCTCAAAGTTCCTATTCATCATAAGTTTTAAATTTAAAATTTTGCGATTTTTTATTTATTTTGAAAGTTATTTCTTTAATATTGCATCTTGTTNTAAAAAATGATAGATGAAAATATGATTTTATTTTAAAATAATAATAATTGGCGTTAATAAATTAAATTTTTTAATGTCATTTTATCTTAAAAAATTATTTTCAATAGTTCTATAATTTGTAAATATATTTGTTTTGAATGAAAATAAAATATAATCATGATTTGAAATCTAAATTTTCAGGAAAATTATTTTAAATGACAAAATAATAAAACTATTTATAAATATAGTAAAAAGAACACATTGAGATGAATAAACTTTTTGTCATTTTGTTATATTTGTAAATAGTTTTATTATTTTATTATTTATGAAAATATCCCTAAATTAAACCTCTTTCCATTTGGTAACTTCTCCCAATTTTCTTTTTCTTTTTATTTTTTTAACTCGCTCTCTCTATTTTTTTTATTTTTGTAGAAAATTTATTTGTAGCAATTTTTTTTTTTGGTTAATAGCAACATTGTTCTCAACATTTTTTTTTCTTCTTTAAGCTTTTTTTTAAGTAAGCATTTTCTCGAGATTTTTTCCTAAGTATTTCTCTTCTAGGTCTCTCTCTCTCTTTTTTTTTGTTTACATATCCTATTCTTTGATAATTATTTAATACTATTATTATCTTTTATATGCTTTTGTAGCTCTTAATTTTGCTGAGTTCAATAAAATGACAAAGAAGTGAGTGGTTGACTATTTTATGATTTTGTAGTTTTTTCTTGCTTTTTAATTTTTGTAAATGCATTTTTACATGTTTTCGTATTTTTTTTCTCTTTTCAAATTTGTTGTAAATATACAACCGTTCATCTAGGTATAATCTTGAAATAAATATAATAGAAACATTTTTTTTTTATTTTTAATAAAAATAATGAACTTTTATTTTAAAGTTTTCATATCGTAAATGCAAATATTATTTGTTTGTTTGTTCTTTTACTATTAAAGAATTGAACTAAGAGAAAAAAAAAATCAATTCGAAAACTTCAAAAAATAATTTAATAATATGTATTACTTCAAAATAATTTTGAGTAATATGAATTTTTTAAATATAAAGAAAAAAACGAGTGTTAACTAGAATACTTTTATTTCTTATACACTTAGATTTTATTTTGAGAAATTAAAAAAATATCAAACTATTTATAAATATAGACAAATTTTATTGATATCACGGTTTATCACTTATAGATAGTAAAATTTTCTATGTTTATTATTTTCAACGTTATAGAATAGTTTGAAATAAGGTAAAAAAGTTGAGATATATTTTCTATAATCTAGAGAAAAAAATTGATAACCCTCTGACTGAAACGACGTCGCTACGTTCCGCGCCTTTTTATATTTTGTTGTATTTATTTATGTACAGCGAAAATCTGATGCCCTAAACTTACAAATCTGAGGCAACGCCGTCTGTTTCTCCACCGAAGATTTCAATTTCATCTTCAAGCCCTAATTTCTTCTTTCTCTGCCGCCGATTCAACCTCTCTTCAAGGTCTCTCTCTTTCACCCTCTCTTTCAAGCATTGACATTCACATAATTACTGTGCTTTCTTCTATCGATCTGTTCCCGCTTCACTATTTTCAGCTAATTTTCCCAATTTTTGACCTGTAATTTCGTATGCCATAATGGGATTCATCAAGTTAATGTTTCTTGTTTTGTGGTAGCCGAGTACTTCGATTTCTGTCGTCGATTTCAGTATAAAAGAAACGATTTTGGATCAATTCTGCTGCCTTGAGAATTTGTCATTACATGTTTGAATATTCTTCAATGGTTCACTTTTCTTCACTTGCACAGCTGCAGCGAGATTCTTAGACACCGGGCCTTTGTCATTGGTTGCTGTAATCATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGTAGAAGGGGTCGAAGCCCTAGCCCGAGAGGGCGCTACGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGTTTGTTCTTTATGAGTTTGTTCTGTAGTTATGCTCATGTTTCTATTTGCCTTCAAAGTTCTTTCCGTTTGGTGTGACCAATTTTCTTACCCTAGAAAGTCTGTAGGAGGAAGAGTGGTCGTTTTATTTGACTTTGTTTTGATAGTAGACAGATCTTTGTACAACAGAGGTGCATAGATAGGGGGAATAACGCATCACATAGTCTAAGGCAGTTAAAAAGGGCTTTCTCGCAAAGCATTTGAATTTTATAATAATAATGAAATTTCCTATTCCGAGAACTATGAAAGAAACAAAATGCAATGGGCCAAAGAACTTTTGATAGTCCCTTCTATTTCTTTATAGCCTACAAAGTATCTTAAGGCCGCTCCCTTCACTTGGGGCAGGGCACTCACCCCTCAGTAGTGCTTTGTTGTGCTGTGCCTCGGGATTAATTGTACCTGCTTTCCACGTTTTGTCGCCTTCTTTGGAAAGCTATTGTTATATCTTTCAAGAATCTCGTGAAAAAGCTCCCAAGTTTACAAATTTTTTTAAGTGAAATTTTTGTTCATAATTCTGTTTGATTTTTATATGATAAATTTTGTTCTGAACGTTTGCAAACTTAGTTCTTCTTAACCTCATGCCTAGGCTTTGGAGATTCGTTGCAATGATACTAAGCATGCCTCACACTGTCAAAATGCTGTATGACCCTATACATAGCGTGAATTCCACCACATTAGTCTGCCTTTTTTTTTTCCGCCTAGGATAGAAGCCGAGTAATAGTAATTCAGTGGATTTTCTTTCATTTTCCTTCTCCCTTGCGGTGCATCAATGACTCAGTTTTGACCTGCATCCAGTAAATGAGAAAAGACCTTCGGTGTCTGAATATAATAATTTAATCTGGTTTCATTCTTGCACGATCTTGTTCTGATTTGTAAGTTGCTTTGAGTTTCTGTGTAGTTTGTGATTTGGAATGGATCTCTATATCACTGTTTGTGTTCTGGTACTACTTTTTTTAACTGCATACTCTTTTCTTAAAATACATTTACTGCATACTGCTATTCTTCGTAGTTTGCTGATCAAATATATTGAGTGCTGTTTAATAATCAATTTAGAGCAAGAATATGATGAAACCTGGTCTACCACTAATTTGAATTTATTTTTTTACACAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCAAAGGATTATTATACTGGGTGAGCATGTCTGAGCTGTATATAGGACTTGCGGATTCTTTGGTACTGGTGTTTTTTAAAAAAAGAAATTAGCAAAAATATAATTTAATAATTTGTGCACATGGTTTTTGATTAATTCTGTAAAATTTATACCACATTTTTAGGCTCTGATAAATGTTTGATGTAATATATTTTCTTTGTTGCTTTCTTAAATTGGTTTAGAATTAATGGTATTAGAGAAAGCATATTTTCATTAATTTCCTTGCTTCTTTTGAACAAAATGTTTTTAGCACAATCCTTGGTAAAAGTCATTGCTGAAGTAGATCCTTCTTAGTGTTTCATCTTTCAAATTATGCATCTGATTATAGGGGCATTTCTTTCTGTTTCTTCTATTCTTTTTGTTTTTCCTTATCACATATTAGGTCTGTTTTTTGAATGTTTGAAGATTTAACAGTGAAACTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTTGAATACATAGAAGATGTTCCCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACGCATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATCACAGACCTTCCATATTGCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTATGGCAGGCCAAGTACCTGTCCTGATTCTGTGGATTTACTTTAACTTTTGTTTTATAACTTTTTCCCTTTTGCTTCTTTTGTGCATCAATTTTTGCAGAGAACCACGTGGTTTTGGCTTTGTTCAATATGTAGATCCTGCTGATGCTGCTGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGGTATGAAGCTGCCTTCCGTCATATTTGGGATACTTTATAGACATGAATGTTTGTAAATTAAGTGTCAAATTATCTGTTGCATTTGCATATGCATATGCACATGTTTTCCAACACTTCTCAAGGGAGTTTGGGATAGCTTTTGACAACAAGTTCTAACACTAATCACGTGCTTGGAAAAGCACTTTAAGTATTCTTTTTAGTACTGTTTGGAATCACTTAAAACTATTGAACTGAATACTGTGGAAGATCTGGAAAGTGACTTTTATTAGGCCGAAAGCACTCATCATATTAATTGGGTTACAGTTCAGTATTGCATCTGTTAAACAAAATTAATAATTTCAGCCATACAAACAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCCACGGTATTCTCGTTCGCCTCGATATTCTCGTTCCCCAGCTCAACGTCATGCGAAGTATTCCCGTTCACCAGCTCCACGGGATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCTCTGCCAACAAAACAAAGGGCTTACTCAAGGTATTTTTTTTAAGCTATTGCTATTTGATATCTAGTTCTTATTATGTATAATGTCTTGGTGAACCCTTTTTTGAGCCTCAATTGTTTCTATATGGCAATGCAGATCAGTGTCCCCTGGTGACAGACCGGATAGTCGAGAGAGGTCTTTCCCACGACAACAGAGCCGTGGTAGGTCATACTCTCGATCTCCACGTCTCGATGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCTGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCAAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAAGTCAATAGGCAAACAGTTTGAAACTTGGGAAGAACAACTACAATGTGTACTATTTTGCCATTATTTAGTTGGATGTTTCCGTTATAGACATCATTTCGTTAGTATTGCTGAGTAGCGTTTGTTTGTTGTTAGGATTTTATGCGTTATCAAATTGATTGTTGGGTACTTTTTCTTTTATTGCTTTCTTTCGTGGTGTGATGAAACTTTAGAATAATACATTTCGCCCTCTTATTTGATATAGTTTTCTTTTGAAAATATCATATTATGTCAT

mRNA sequence

CGTCGCTACGTTCCGCGCCTTTTTATATTTTGTTGTATTTATTTATGTACAGCGAAAATCTGATGCCCTAAACTTACAAATCTGAGGCAACGCCGTCTGTTTCTCCACCGAAGATTTCAATTTCATCTTCAAGCCCTAATTTCTTCTTTCTCTGCCGCCGATTCAACCTCTCTTCAAGCTGCAGCGAGATTCTTAGACACCGGGCCTTTGTCATTGGTTGCTGTAATCATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGTAGAAGGGGTCGAAGCCCTAGCCCGAGAGGGCGCTACGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCAAAGGATTATTATACTGGAGAACCACGTGGTTTTGGCTTTGTTCAATATGTAGATCCTGCTGATGCTGCTGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGCCATACAAACAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCCACGGTATTCTCGTTCGCCTCGATATTCTCGTTCCCCAGCTCAACGTCATGCGAAGTATTCCCGTTCACCAGCTCCACGGGATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCTCTGCCAACAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTGGTGACAGACCGGATAGTCGAGAGAGGTCTTTCCCACGACAACAGAGCCGTGGTAGGTCATACTCTCGATCTCCACGTCTCGATGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCTGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCAAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAACTGCAGCGAGATTCTTAGACACCGGGCCTTTGTCATTGGTTGCTGTAATCATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGTAGAAGGGGTCGAAGCCCTAGCCCGAGAGGGCGCTACGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCAAAGGATTATTATACTGGAGAACCACGTGGTTTTGGCTTTGTTCAATATGTAGATCCTGCTGATGCTGCTGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGCCATACAAACAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCCACGGTATTCTCGTTCGCCTCGATATTCTCGTTCCCCAGCTCAACGTCATGCGAAGTATTCCCGTTCACCAGCTCCACGGGATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCTCTGCCAACAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTGGTGACAGACCGGATAGTCGAGAGAGGTCTTTCCCACGACAACAGAGCCGTGGTAGGTCATACTCTCGATCTCCACGTCTCGATGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCTGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCAAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAAGTCAATAGGCAAACAGTTTGAAACTTGGGAAGAACAACTACAATGTGTACTATTTTGCCATTATTTAGTTGGATGTTTCCGTTATAGACATCATTTCGTTAGTATTGCTGAGTAGCGTTTGTTTGTTGTTAGGATTTTATGCGTTATCAAATTGATTGTTGGGTACTTTTTCTTTTATTGCTTTCTTTCGTGGTGTGATGAAACTTTAGAATAATACATTTCGCCCTCTTATTTGATATAGTTTTCTTTTGAAAATATCATATTATGTCAT

Coding sequence (CDS)

ATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGTAGAAGGGGTCGAAGCCCTAGCCCGAGAGGGCGCTACGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCAAAGGATTATTATACTGGAGAACCACGTGGTTTTGGCTTTGTTCAATATGTAGATCCTGCTGATGCTGCTGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGCCATACAAACAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCCACGGTATTCTCGTTCGCCTCGATATTCTCGTTCCCCAGCTCAACGTCATGCGAAGTATTCCCGTTCACCAGCTCCACGGGATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCTCTGCCAACAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTGGTGACAGACCGGATAGTCGAGAGAGGTCTTTCCCACGACAACAGAGCCGTGGTAGGTCATACTCTCGATCTCCACGTCTCGATGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCTGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCAAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAACTGCAGCGAGATTCTTAGACACCGGGCCTTTGTCATTGGTTGCTGTAATCATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGTAGAAGGGGTCGAAGCCCTAGCCCGAGAGGGCGCTACGTGGGACGTGGAAGAGACCTCCCCACTAGTCTTCTAGTTCGTAATCTTCGCCATGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCTATTAAGGACATATACCTACCAAAGGATTATTATACTGGAGAACCACGTGGTTTTGGCTTTGTTCAATATGTAGATCCTGCTGATGCTGCTGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGCCATACAAACAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCCACGGTATTCTCGTTCGCCTCGATATTCTCGTTCCCCAGCTCAACGTCATGCGAAGTATTCCCGTTCACCAGCTCCACGGGATGCAAGGTCTAGGTCCCGTAGTTATGATTATGCATCTCTGCCAACAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTGGTGACAGACCGGATAGTCGAGAGAGGTCTTTCCCACGACAACAGAGCCGTGGTAGGTCATACTCTCGATCTCCACGTCTCGATGGTTCAAGAAGTAGGAGTCAGAGTCCAGCACGGGCTGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGCCTGAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCAGGAGCCAAAGTCCACGACGAAGTCCAAGACATGAAGAAGAGTATAGAAGTGAACCGAATGGAGATAGGAGCCCAAGTCAATAG

Protein sequence

MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYDYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSRSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPTAARFLDTGPLSLVAVIMRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYDYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSRSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ

Homology

[Close]

BLAST of Lsi06G006070 vs. Swiss-Prot
Match: SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-83
Identity = 204/333 (61.26%), Postives = 222/333 (66.67%), Query Frame = 1


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
            +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 121 DMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYD 180
           +MRARERG     GRF DRRR+PPRY     YSR         SRSP PR  RSRSRS D
Sbjct: 121 EMRARERG----GGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGD 180

Query: 181 YASLPTKQRAYSRSVSP-GDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGS 240
           Y S P  +R + RS+SP  +R D R           RSYSRSP  DGSR RS +P R  S
Sbjct: 181 YYS-PPPRRHHPRSISPREERYDGR-----------RSYSRSPASDGSRGRSLTPVRGKS 240

Query: 241 RSPSPVRGRSLSRS--RSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPTAARFLDTG 300
           RS SP   RS+SRS  RSRS S  R+RS SPRRS          P   RSP  +R     
Sbjct: 241 RSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRS------ISRSPRRSRSPRRSR----- 276

Query: 301 PLSLVAVIMRGRSYTPSPPRGYGRRGRSPSPRG 331
                      RSYTP P      R RS SP G
Sbjct: 301 -----------RSYTPEP-----ARSRSQSPHG 276

[Close]

BLAST of Lsi06G006070 vs. Swiss-Prot
Match: SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.7e-79
Identity = 184/291 (63.23%), Postives = 205/291 (70.45%), Query Frame = 1


Query: 306 MRGRSYTPSPPRGYGRRGRSPSPRGRYVG-RGRDLPTSLLVRNLRHDCRPEDLRRPFGQF 365
           MRGRSYTPSPPRGYGRRGRSPSPRGR+ G R  DLPTSLLVRNLRHDCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 366 GAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKP 425
           G +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 426 SDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSY 485
           ++MR R+RG  +N  RF DRRRSPPRYSRSP                P  R  RSRSRS 
Sbjct: 121 TEMRTRDRGGRSN--RFQDRRRSPPRYSRSP----------------PPRRGRRSRSRSR 180

Query: 486 DYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGS 545
            Y S P K R  SRSVSP DR   +E          RSYSRSP  +GSR RS SP R  S
Sbjct: 181 GYNSPPAK-RHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKS 240

Query: 546 RSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
            S SP R  S  ++RS +   +RS+S  PR+S       R   NGDRSPSQ
Sbjct: 241 HSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of Lsi06G006070 vs. Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.8e-29
Identity = 100/230 (43.48%), Postives = 124/230 (53.91%), Query Frame = 1


Query: 307 RGRSYTP-----SPPR---GYGRRGRSPSPRGR-YVGRGRDLPTSLLVRNLRHDCRPEDL 366
           R RSY+P     SPPR   GY        P  R +   G   P+ LL+RNL  D RP DL
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDARPNDL 66

Query: 367 RRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFA 426
           R  F +FG +KDIYLP++YYTGEPRGFGFV+Y    DAA+A  +M+  V+ GRE+ +VFA
Sbjct: 67  RDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 126

Query: 427 EENRKKPSDMRAR----------ERGSHTNSGR---FHDRRRSPPRYSRSPRYSR----- 486
           EENRK P +MR            +R SH +  R    H R RSPPR  R  R+S+     
Sbjct: 127 EENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPR--RESRHSKVREDD 186

Query: 487 --SPAQRHAKYSRSPAPRDARS------RSRSYDYASLPTKQRAYSRSVS 502
             SP +R    SRSP PR+ R       RS   +    P + R  SRS S
Sbjct: 187 LYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRS 231

[Close]

BLAST of Lsi06G006070 vs. Swiss-Prot
Match: SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-28
Identity = 109/284 (38.38%), Postives = 141/284 (49.65%), Query Frame = 1


Query: 309 RSYTP---SPPR-GYGRRGRSPSPR---------GRYVGRGRDLPTSLLVRNLRHDCRPE 368
           R Y+P   SPPR GYG RGRSP P          G   GR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 369 DLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV 428
           +LR PF +FG ++D+Y+P+DYY+G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 429 FAEENRKKPSDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPR 488
            A E+RK+P +MR + R          DR     R SRS   SRSP +          P 
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSR-SRSISRSRSPRR----------PS 181

Query: 489 DARSRSRSYDYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSR---SPRLDGS 548
           D+RSR RS  Y+  P                  R R  P +     +YSR   SP  +G+
Sbjct: 182 DSRSRYRSRSYSPAP------------------RRRGGPPRGEEDENYSRRSYSPGYEGA 241

Query: 549 RSRSQSPARAGSRSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRS 577
            + +    R G        G      R   ++VSRS S S  RS
Sbjct: 242 AAAAPDRDRNGDNEIREKPGYEAEDRRRGGRAVSRSPSGSRSRS 256

[Close]

BLAST of Lsi06G006070 vs. Swiss-Prot
Match: SRS10_MOUSE (Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 4.2e-27
Identity = 106/266 (39.85%), Postives = 144/266 (54.14%), Query Frame = 1


Query: 341 TSLLVRNLRHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH 400
           TSL VRN+  D R EDLRR FG++G I D+Y+P D+YT  PRGF +VQ+ D  DA DA H
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 401 QMDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRS 460
            +D   + GR++ + FA+ +RK P+ M+A+E  +  +S R+ D  R   R SRS  Y R 
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRY--RRSRSRSYERR 129

Query: 461 PAQRHA---KYSRSPAPRDARSRSRSYDYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQ 520
            ++  +    Y RS +PR++R           PT +   SRS S  DR   R RSF R +
Sbjct: 130 RSRSRSFDYNYRRSYSPRNSR-----------PTGRPRRSRSHSDNDRFKHRNRSFSRSK 189

Query: 521 SRGRSYSRS-PRLD---GSRSRSQSPARA--------------------GSRSPSPVRGR 580
           S  RS S+S P+ +    SRSRS S  +                      SR   P R +
Sbjct: 190 SNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSK 249

[Close]

BLAST of Lsi06G006070 vs. TrEMBL
Match: A0A0A0LZX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G630290 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 1.5e-140
Identity = 292/350 (83.43%), Postives = 303/350 (86.57%), Query Frame = 1


Query: 248 RSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPTAARFLDTGPLSLVAVIMR 307
           RSLS S   S S +   S +      H E Y S        + ARFLD+GPLSLVAV+MR
Sbjct: 65  RSLSPSSKHSHSHNFFTSFTDLFPLHHFELYFSH----FLTSPARFLDSGPLSLVAVLMR 124

Query: 308 GRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFGAI 367
           GRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFGAI
Sbjct: 125 GRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFGAI 184

Query: 368 KDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPSDM 427
           KDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPSDM
Sbjct: 185 KDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDM 244

Query: 428 RARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYDYA 487
           RARERG    SGR+HDRRRSPP   RSPRYSRSPAQR  +YSRSPAPR ARSRSRSYDYA
Sbjct: 245 RARERG----SGRYHDRRRSPP---RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYA 304

Query: 488 SLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSRSP 547
           S P KQRAYSRS+SP DRPDSRERSFPRQ+SRGRSYSRSPRLDGSRSRSQSP + GSRSP
Sbjct: 305 SQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSQSPTQPGSRSP 364

Query: 548 SPVRGRSLSRSRSRSKSV--SRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
           SPVRGRSLSRSRSRSKSV  SRSRS+SPRRSPRHEEEYRSEPNGDRSPSQ
Sbjct: 365 SPVRGRSLSRSRSRSKSVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 403

[Close]

BLAST of Lsi06G006070 vs. TrEMBL
Match: A0A061GSC2_THECC (SC35-like splicing factor 33 OS=Theobroma cacao GN=TCM_040038 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.3e-88
Identity = 205/300 (68.33%), Postives = 222/300 (74.00%), Query Frame = 1


Query: 306 MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 365
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCRPEDLRRPF +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRARDLPTSLLVRNLRHDCRPEDLRRPFERFG 60

Query: 366 AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 425
            +KDIYLPKDYYTGEPRGFGFVQYVDPADAA+AK+QMDG +LLGRELTVVFAEENRKKP+
Sbjct: 61  PLKDIYLPKDYYTGEPRGFGFVQYVDPADAAEAKYQMDGQILLGRELTVVFAEENRKKPA 120

Query: 426 DMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYD 485
           +MR RERG     GR+HDRRRSPPR SRSPRYSRSP            PR  RSRSRS D
Sbjct: 121 EMRQRERG---RGGRYHDRRRSPPRNSRSPRYSRSP------------PRHGRSRSRSRD 180

Query: 486 YASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSR 545
           Y+  P K+R YSRS+SP D   SR+R           YSRSP  +GSRSRS+S  R   R
Sbjct: 181 YS--PPKERHYSRSISPQDGQYSRDR-----------YSRSPLYNGSRSRSRSLDRGQGR 240

Query: 546 SPSPVRGRSLSRSRSRSKSVSRSRSQSPRR----------SPRHEEEYRSEPNGDRSPSQ 596
           S S  RGRS  RSRS+S   S SRS SPRR          SP H E Y+ E NG+RSPSQ
Sbjct: 241 SRS--RGRSSRRSRSQSPRQSGSRSHSPRRVESPMRSRSQSPNH-EGYKREVNGERSPSQ 269

[Close]

BLAST of Lsi06G006070 vs. TrEMBL
Match: M5WJH1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010237mg PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 193/296 (65.20%), Postives = 212/296 (71.62%), Query Frame = 1


Query: 306 MRGRSYTPSPPRG-YGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQF 365
           MRGRSY+PSPPRG YGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCRPEDLR+PFGQF
Sbjct: 1   MRGRSYSPSPPRGGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRPEDLRKPFGQF 60

Query: 366 GAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKP 425
           G +KD+YLPKDYYTGEPRGFGFVQ+V+PADA +AK+QMDG +L GRE+TVVFAEENRKKP
Sbjct: 61  GTLKDVYLPKDYYTGEPRGFGFVQFVEPADAEEAKYQMDGQLLQGREVTVVFAEENRKKP 120

Query: 426 SDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSY 485
           SDMR RER S T SGR+ DRRRSPPRYSRSPRYSRSP  RH            RSRSRS+
Sbjct: 121 SDMRHRERAS-TRSGRYRDRRRSPPRYSRSPRYSRSPPPRHT-----------RSRSRSH 180

Query: 486 DYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPR-LDGSRSRSQSPARAG 545
           DY S P K+R YSRSVSP            R+ SR +S+SRSP    GSRS S+SP    
Sbjct: 181 DYYSPPPKRRDYSRSVSPPQE---------RRYSREKSFSRSPPPYKGSRSHSESP---- 240

Query: 546 SRSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRH-----EEEYRSEPNGDRSPS 595
                          R  S+S SRSRS SPRR  R       E+Y  EPNGDR PS
Sbjct: 241 --------------DRGPSRSRSRSRSHSPRRIDRRTRSPINEDYPREPNGDRFPS 257

[Close]

BLAST of Lsi06G006070 vs. TrEMBL
Match: A0A0D2UDG0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G126300 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.7e-83
Identity = 199/292 (68.15%), Postives = 216/292 (73.97%), Query Frame = 1


Query: 306 MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 365
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCRPEDLRRPF +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRARDLPTSLLVRNLRHDCRPEDLRRPFERFG 60

Query: 366 AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 425
            +KDIYLPKDYYTGEPRGFGFVQYVDPADAA+AK+QMDG VLLGRELTVVFAEENRKKP+
Sbjct: 61  PLKDIYLPKDYYTGEPRGFGFVQYVDPADAAEAKYQMDGQVLLGRELTVVFAEENRKKPA 120

Query: 426 DMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYD 485
           +MR RER      GR+ DRRRSPPRYSRSPRYSRSP            PR  R RSRS D
Sbjct: 121 EMRHRER---ARGGRYRDRRRSPPRYSRSPRYSRSP------------PRHGRYRSRSRD 180

Query: 486 YASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSR 545
           Y+  P K R YSRSVSP D   SR+R           YSRSP  + SRS S+S  R   +
Sbjct: 181 YS--PPKDRHYSRSVSPQDGHYSRDR-----------YSRSPPYNVSRSCSRSLER--GQ 240

Query: 546 SPSPVRGRSLSRSRSRS--KSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
            PS  R RS  RSRS S  ++ S  RS+S  RSP H EEY+ E NG+RSPSQ
Sbjct: 241 GPSQGRSRSPRRSRSHSPREAGSPIRSRSCSRSPYH-EEYKRELNGERSPSQ 261

[Close]

BLAST of Lsi06G006070 vs. TrEMBL
Match: A0A068V7Q4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019309001 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.7e-83
Identity = 195/296 (65.88%), Postives = 215/296 (72.64%), Query Frame = 1


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSY+PSPPRGYGRRGRSPSPRGRY GR RD PTSLLVRNLRHDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYSPSPPRGYGRRGRSPSPRGRYGGRARDAPTSLLVRNLRHDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 120
            IKDIYLP+DYYTGEPRGFGFVQYVDPADA +AK+QMDG V  GR+LTVVFAEENRKKP 
Sbjct: 61  PIKDIYLPRDYYTGEPRGFGFVQYVDPADAGEAKYQMDGHVFQGRQLTVVFAEENRKKPL 120

Query: 121 DMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYD 180
           +MRARER      GR +DRRRSP RYSRSP+YSRSP  R+           ARS SRS D
Sbjct: 121 EMRARER---VGRGRHYDRRRSPVRYSRSPQYSRSPPSRY-----------ARSGSRSRD 180

Query: 181 YASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPAR---- 240
           Y S P K+R YSRSVSP +R  SRERS+ R  +R RS    P  DG RSRS++P R    
Sbjct: 181 YYSPPPKRRQYSRSVSPQERRYSRERSYSRSPARERS---PPPYDGPRSRSRTPVRELSP 240

Query: 241 ----AGSRSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSP 289
               + SRS SPVRG    +SRSRS S SRSRS  P        +YR + + D SP
Sbjct: 241 PYNGSRSRSRSPVRG----QSRSRSPSRSRSRSADP-------VDYRRDLDRDGSP 268

[Close]

BLAST of Lsi06G006070 vs. TAIR10
Match: AT1G55310.3 (AT1G55310.3 SC35-like splicing factor 33)

HSP 1 Score: 301.6 bits (771), Expect = 1.1e-81
Identity = 203/345 (58.84%), Postives = 221/345 (64.06%), Query Frame = 1


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GR RDLPTSLLVRNLRHDCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYYTG------------EPRGFGFVQYVDPADAADAKHQMDGCVLLGRELT 120
            +KDIYLP+DYYTG            +PRGFGFVQ++DPADAADAKH MDG +LLGRELT
Sbjct: 61  PVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 120

Query: 121 VVFAEENRKKPSDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPA 180
           VVFAEENRKKP++MRARERG      RF DRRR+PPRY     YSRS         RSP 
Sbjct: 121 VVFAEENRKKPTEMRARERGG---GSRFRDRRRTPPRY-----YSRS---------RSPP 180

Query: 181 PRDARSRSRSYDYASLPTKQRAYSRSVSPGD-RPDSRERSFPRQQSRGRSYSRSPRLDGS 240
           PR  RSRSRS DY S P  +R + RS+SP + R D R           RSYSRSP  DGS
Sbjct: 181 PRRGRSRSRSGDYYS-PPPRRHHPRSISPREERYDGR-----------RSYSRSPASDGS 240

Query: 241 RSRSQSPARAGSRSPSPVRGRSLSRS--RSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGD 300
           R RS +P R  SRS SP   RS+SRS  RSRS S  R+RS SPRRS          P   
Sbjct: 241 RGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRS------ISRSPRRS 289

Query: 301 RSPTAARFLDTGPLSLVAVIMRGRSYTPSPPRGYGRRGRSPSPRG 331
           RSP  +R                RSYTP P      R RS SP G
Sbjct: 301 RSPRRSR----------------RSYTPEP-----ARSRSQSPHG 289

[Close]

BLAST of Lsi06G006070 vs. TAIR10
Match: AT3G13570.1 (AT3G13570.1 SC35-like splicing factor 30A)

HSP 1 Score: 297.0 bits (759), Expect = 2.6e-80
Identity = 184/291 (63.23%), Postives = 205/291 (70.45%), Query Frame = 1


Query: 306 MRGRSYTPSPPRGYGRRGRSPSPRGRYVG-RGRDLPTSLLVRNLRHDCRPEDLRRPFGQF 365
           MRGRSYTPSPPRGYGRRGRSPSPRGR+ G R  DLPTSLLVRNLRHDCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 366 GAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKP 425
           G +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 426 SDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSY 485
           ++MR R+RG  +N  RF DRRRSPPRYSRSP                P  R  RSRSRS 
Sbjct: 121 TEMRTRDRGGRSN--RFQDRRRSPPRYSRSP----------------PPRRGRRSRSRSR 180

Query: 486 DYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGS 545
            Y S P K R  SRSVSP DR   +E          RSYSRSP  +GSR RS SP R  S
Sbjct: 181 GYNSPPAK-RHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKS 240

Query: 546 RSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
            S SP R  S  ++RS +   +RS+S  PR+S       R   NGDRSPSQ
Sbjct: 241 HSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of Lsi06G006070 vs. TAIR10
Match: AT5G18810.1 (AT5G18810.1 SC35-like splicing factor 28)

HSP 1 Score: 130.6 bits (327), Expect = 3.3e-30
Identity = 100/230 (43.48%), Postives = 124/230 (53.91%), Query Frame = 1


Query: 307 RGRSYTP-----SPPR---GYGRRGRSPSPRGR-YVGRGRDLPTSLLVRNLRHDCRPEDL 366
           R RSY+P     SPPR   GY        P  R +   G   P+ LL+RNL  D RP DL
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDARPNDL 66

Query: 367 RRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFA 426
           R  F +FG +KDIYLP++YYTGEPRGFGFV+Y    DAA+A  +M+  V+ GRE+ +VFA
Sbjct: 67  RDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 126

Query: 427 EENRKKPSDMRAR----------ERGSHTNSGR---FHDRRRSPPRYSRSPRYSR----- 486
           EENRK P +MR            +R SH +  R    H R RSPPR  R  R+S+     
Sbjct: 127 EENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPR--RESRHSKVREDD 186

Query: 487 --SPAQRHAKYSRSPAPRDARS------RSRSYDYASLPTKQRAYSRSVS 502
             SP +R    SRSP PR+ R       RS   +    P + R  SRS S
Sbjct: 187 LYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRS 231

[Close]

BLAST of Lsi06G006070 vs. TAIR10
Match: AT3G55460.1 (AT3G55460.1 SC35-like splicing factor 30)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-29
Identity = 109/284 (38.38%), Postives = 141/284 (49.65%), Query Frame = 1


Query: 309 RSYTP---SPPR-GYGRRGRSPSPR---------GRYVGRGRDLPTSLLVRNLRHDCRPE 368
           R Y+P   SPPR GYG RGRSP P          G   GR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 369 DLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV 428
           +LR PF +FG ++D+Y+P+DYY+G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 429 FAEENRKKPSDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPR 488
            A E+RK+P +MR + R          DR     R SRS   SRSP +          P 
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSR-SRSISRSRSPRR----------PS 181

Query: 489 DARSRSRSYDYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSR---SPRLDGS 548
           D+RSR RS  Y+  P                  R R  P +     +YSR   SP  +G+
Sbjct: 182 DSRSRYRSRSYSPAP------------------RRRGGPPRGEEDENYSRRSYSPGYEGA 241

Query: 549 RSRSQSPARAGSRSPSPVRGRSLSRSRSRSKSVSRSRSQSPRRS 577
            + +    R G        G      R   ++VSRS S S  RS
Sbjct: 242 AAAAPDRDRNGDNEIREKPGYEAEDRRRGGRAVSRSPSGSRSRS 256

[Close]

BLAST of Lsi06G006070 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-17
Identity = 104/303 (34.32%), Postives = 148/303 (48.84%), Query Frame = 1


Query: 37  SLLVRNLRHDCRPEDLRRPFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQ 96
           SLLV N+      +DL   F ++G + D+++P+D  TG+ RGF FV+Y    +A  A  +
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 97  MDGCVLLGRELTVVFAE--ENRKKPSDMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSR 156
           +DG V+ GRE+TV FA+   N +K S  R  E    +   R        PR SRSPR SR
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS-----PRRSRSPRRSR 136

Query: 157 SPAQRHA-KYSRSPAPRDARSRSRSYDYASLPTKQRAYSRSVSPGDRPDSRERSFPRQQS 216
           SP +R + + SRSP     R RSR  DY     ++R+ SRS    +R + ++R   R+  
Sbjct: 137 SPPRRRSPRRSRSP-----RRRSRD-DYREKDYRKRSRSRSYDRRERHEEKDRDHRRR-- 196

Query: 217 RGRSYSRSPRLDGSRSRSQSPARAGSRSPSPVRGRSLSRSRSRSKSVSRS------RSQS 276
                        +RSRS SP          VRGR  + SRS S+S+S S      RS S
Sbjct: 197 -------------TRSRSASPDEKRR-----VRGRYDNESRSHSRSLSASPARRSPRSSS 256

Query: 277 PRRSPRHEEEYRSEPNGDRSPTAARFLDTGPLSLVAVIMRGRSYTPSPPRGYGRRG--RS 329
           P+++    E    + + +RSP+  R L     +L       +  +PS      RR   RS
Sbjct: 257 PQKTSPAREVSPDKRSNERSPSPRRSLSPRSPAL-------QKASPSKEMSPERRSNERS 281

[Close]

BLAST of Lsi06G006070 vs. NCBI nr
Match: gi|700211478|gb|KGN66574.1| (hypothetical protein Csa_1G630290 [Cucumis sativus])

HSP 1 Score: 508.1 bits (1307), Expect = 2.1e-140
Identity = 292/350 (83.43%), Postives = 303/350 (86.57%), Query Frame = 1


Query: 248 RSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPTAARFLDTGPLSLVAVIMR 307
           RSLS S   S S +   S +      H E Y S        + ARFLD+GPLSLVAV+MR
Sbjct: 65  RSLSPSSKHSHSHNFFTSFTDLFPLHHFELYFSH----FLTSPARFLDSGPLSLVAVLMR 124

Query: 308 GRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFGAI 367
           GRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFGAI
Sbjct: 125 GRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFGAI 184

Query: 368 KDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPSDM 427
           KDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPSDM
Sbjct: 185 KDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDM 244

Query: 428 RARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYDYA 487
           RARERG    SGR+HDRRRSPP   RSPRYSRSPAQR  +YSRSPAPR ARSRSRSYDYA
Sbjct: 245 RARERG----SGRYHDRRRSPP---RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYA 304

Query: 488 SLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSRSP 547
           S P KQRAYSRS+SP DRPDSRERSFPRQ+SRGRSYSRSPRLDGSRSRSQSP + GSRSP
Sbjct: 305 SQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSQSPTQPGSRSP 364

Query: 548 SPVRGRSLSRSRSRSKSV--SRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
           SPVRGRSLSRSRSRSKSV  SRSRS+SPRRSPRHEEEYRSEPNGDRSPSQ
Sbjct: 365 SPVRGRSLSRSRSRSKSVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 403

[Close]

BLAST of Lsi06G006070 vs. NCBI nr
Match: gi|659098806|ref|XP_008450302.1| (PREDICTED: serine/arginine-rich splicing factor 33-like isoform X1 [Cucumis melo])

HSP 1 Score: 506.9 bits (1304), Expect = 4.8e-140
Identity = 270/290 (93.10%), Postives = 274/290 (94.48%), Query Frame = 1


Query: 306 MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 365
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 366 AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 425
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 426 DMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYD 485
           DMRARERGSHTNSGRFHDRRRSP RYSRSPRYSRSPAQR  +YSRSPAPR ARSRSRSYD
Sbjct: 121 DMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 486 YASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSR 545
           YAS P KQRAYSRSVSP DRPDSRERSFPRQ+SRGRSYSRSPRLDGSRSRS SP R   R
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRG--R 240

Query: 546 SPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
           SPSPVRGRSLSRSRSRSKSVSRSRS+SP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 SPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]

BLAST of Lsi06G006070 vs. NCBI nr
Match: gi|659098808|ref|XP_008450303.1| (PREDICTED: serine/arginine-rich splicing factor 33-like isoform X2 [Cucumis melo])

HSP 1 Score: 492.7 bits (1267), Expect = 9.3e-136
Identity = 266/290 (91.72%), Postives = 270/290 (93.10%), Query Frame = 1


Query: 306 MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 365
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 366 AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 425
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 426 DMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYD 485
           DMRARERGS    GRFHDRRRSP RYSRSPRYSRSPAQR  +YSRSPAPR ARSRSRSYD
Sbjct: 121 DMRARERGS----GRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 486 YASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSR 545
           YAS P KQRAYSRSVSP DRPDSRERSFPRQ+SRGRSYSRSPRLDGSRSRS SP R   R
Sbjct: 181 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRG--R 240

Query: 546 SPSPVRGRSLSRSRSRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
           SPSPVRGRSLSRSRSRSKSVSRSRS+SP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 241 SPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]

BLAST of Lsi06G006070 vs. NCBI nr
Match: gi|449442606|ref|XP_004139072.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis sativus])

HSP 1 Score: 491.9 bits (1265), Expect = 1.6e-135
Identity = 267/292 (91.44%), Postives = 273/292 (93.49%), Query Frame = 1


Query: 306 MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLRHDCRPEDLRRPFGQFG 365
           MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNL HDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRDLPTSLLVRNLSHDCRPEDLRRPFGQFG 60

Query: 366 AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPS 425
           AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPS
Sbjct: 61  AIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPS 120

Query: 426 DMRARERGSHTNSGRFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYD 485
           DMRARERG    SGR+HDRRRSPP   RSPRYSRSPAQR  +YSRSPAPR ARSRSRSYD
Sbjct: 121 DMRARERG----SGRYHDRRRSPP---RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 180

Query: 486 YASLPTKQRAYSRSVSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSR 545
           YAS P KQRAYSRS+SP DRPDSRERSFPRQ+SRGRSYSRSPRLDGSRSRSQSP + GSR
Sbjct: 181 YASQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSQSPTQPGSR 240

Query: 546 SPSPVRGRSLSRSRSRSKSV--SRSRSQSPRRSPRHEEEYRSEPNGDRSPSQ 596
           SPSPVRGRSLSRSRSRSKSV  SRSRS+SPRRSPRHEEEYRSEPNGDRSPSQ
Sbjct: 241 SPSPVRGRSLSRSRSRSKSVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 285

[Close]

BLAST of Lsi06G006070 vs. NCBI nr
Match: gi|659098810|ref|XP_008450304.1| (PREDICTED: serine/arginine-rich splicing factor 33-like isoform X3 [Cucumis melo])

HSP 1 Score: 353.2 bits (905), Expect = 8.8e-94
Identity = 196/214 (91.59%), Postives = 200/214 (93.46%), Query Frame = 1


Query: 75  EPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSG 134
           EPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSG
Sbjct: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSG 78

Query: 135 RFHDRRRSPPRYSRSPRYSRSPAQRHAKYSRSPAPRDARSRSRSYDYASLPTKQRAYSRS 194
           RFHDRRRSP RYSRSPRYSRSPAQR  +YSRSPAPR ARSRSRSYDYAS P KQRAYSRS
Sbjct: 79  RFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS 138

Query: 195 VSPGDRPDSRERSFPRQQSRGRSYSRSPRLDGSRSRSQSPARAGSRSPSPVRGRSLSRSR 254
           VSP DRPDSRERSFPRQ+SRGRSYSRSPRLDGSRSRS SP R   RSPSPVRGRSLSRSR
Sbjct: 139 VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRG--RSPSPVRGRSLSRSR 198

Query: 255 SRSKSVSRSRSQSPRRSPRHEEEYRSEPNGDRSP 289
           SRSKSVSRSRS+SP+ SPRHEEEYRSEPNGDRSP
Sbjct: 199 SRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSP 230

The following BLAST results are available for this feature:

BLAST of Lsi06G006070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRC33_ARATH	1.1e-83	61.26	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=...	[more]
SL30A_ARATH	4.7e-79	63.23	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN...	[more]
SRC28_ARATH	5.8e-29	43.48	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=...	[more]
SRC30_ARATH	2.2e-28	38.38	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=...	[more]
SRS10_MOUSE	4.2e-27	39.85	Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10 PE=1 SV=2	[more]

BLAST of Lsi06G006070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZX6_CUCSA	1.5e-140	83.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G630290 PE=4 SV=1	[more]
A0A061GSC2_THECC	2.3e-88	68.33	SC35-like splicing factor 33 OS=Theobroma cacao GN=TCM_040038 PE=4 SV=1	[more]
M5WJH1_PRUPE	1.3e-83	65.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010237mg PE=4 SV=1	[more]
A0A0D2UDG0_GOSRA	1.7e-83	68.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G126300 PE=4 SV=1	[more]
A0A068V7Q4_COFCA	3.7e-83	65.88	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019309001 PE=4 SV=1	[more]

BLAST of Lsi06G006070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55310.3	1.1e-81	58.84	SC35-like splicing factor 33	[more]
AT3G13570.1	2.6e-80	63.23	SC35-like splicing factor 30A	[more]
AT5G18810.1	3.3e-30	43.48	SC35-like splicing factor 28	[more]
AT3G55460.1	1.2e-29	38.38	SC35-like splicing factor 30	[more]
AT5G64200.1	1.9e-17	34.32	ortholog of human splicing factor SC35	[more]

BLAST of Lsi06G006070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211478\|gb\|KGN66574.1\|	2.1e-140	83.43	hypothetical protein Csa_1G630290 [Cucumis sativus]	[more]
gi\|659098806\|ref\|XP_008450302.1\|	4.8e-140	93.10	PREDICTED: serine/arginine-rich splicing factor 33-like isoform X1 [Cucumis melo...	[more]
gi\|659098808\|ref\|XP_008450303.1\|	9.3e-136	91.72	PREDICTED: serine/arginine-rich splicing factor 33-like isoform X2 [Cucumis melo...	[more]
gi\|449442606\|ref\|XP_004139072.1\|	1.6e-135	91.44	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cuc...	[more]
gi\|659098810\|ref\|XP_008450304.1\|	8.8e-94	91.59	PREDICTED: serine/arginine-rich splicing factor 33-like isoform X3 [Cucumis melo...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR003954	RRM_dom_euk
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006070.1	Lsi06G006070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..107 score: 4.2E-18coord: 343..412 score: 4.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 342..415 score: 3.7E-20coord: 37..110 score: 3.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 36..114 score: 16.927coord: 341..419 score: 16
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 342..415 score: 0.039coord: 37..110 score: 0
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 22..121 score: 3.2E-24coord: 261..271 score: 2.5E-25coord: 337..426 score: 2.5
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 36..140 score: 2.96E-26coord: 341..445 score: 2.96
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 8..194 score: 8.1E-88coord: 557..586 score: 8.1
None	No IPR available	PANTHER	PTHR23147:SF6	SUBFAMILY NOT NAMED	coord: 8..194 score: 8.1E-88coord: 557..586 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G006070	Csa1G630290	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006070	CSPI01G31300	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006070	CmaCh10G008740	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006070	CmaCh11G008980	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006070	CmoCh10G009140	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006070	CmoCh11G009120	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006070	Cla007332	Watermelon (97103) v1	lsiwmB397
Lsi06G006070	MELO3C015085	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G006070	ClCG03G012340	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G006070	MELO3C015085.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G006070	Cla97C03G062650	Watermelon (97103) v2	lsiwmbB365
Lsi06G006070	Bhi02G001217	Wax gourd	lsiwgoB520
Lsi06G006070	Cp4.1LG04g12490	Cucurbita pepo (Zucchini)	cpelsiB563
Lsi06G006070	CsGy1G030470	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006070	Carg25972	Silver-seed gourd	carlsiB807
Lsi06G006070	Carg17843	Silver-seed gourd	carlsiB886
Lsi06G006070	CsaV3_1G043660	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G006070	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006070	Cucurbita pepo (Zucchini)	cpelsiB299