Lsi06G005960 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G005960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 8176535 .. 8177457 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAGGTGGGATTGTTTAAATTAAACCTAGTTGCCTATGAAAAAAGACACTAGCTAGCGTGCTTAAGCACCACTTATGCCTACATGTTAATCATGTTTATCTTTCTGTGAGATTCAAGTTCTACTACCTTTATGAAAAAAATATACTAAAATCTAACCAGTTTTAAGCTATACTCAACTTGGTTAACTTTCTCTCGTTTAATTTGAAGAATAATTCAATTTAACCATTCATGAGTAAAAAGCATTAAATTACCAATATTGTAATATATGACTAATCTTAATTAGTTTTATACATTACAAAGTGTATAAAAACATTCGTTTAAATAACTACTAATTGAGCTATGGTCACATTTTTTTTTCTCTCTTGTAGGGATTTAAGAAAATAGTGGCAGAGAGATGGGAATTTGGGAATGAAAACTTCAAGAAAGGCTAGAAGCAATTACTATTAGAGGTTCAAAGAAGAAAATCTCATAATCCCAACAACAGTCATCAACAAATCCCATTCCATATCTTCCATCTACACAAACACCAAAAACAACCCAGCCTCTGTTACACCACCACTTCCTCCTCTGATCCCGACATCTTGGCAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCCAAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAGAAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGATATACACTAA

mRNA sequence

ATGCTTAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCCAAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAGAAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGATATACACTAA

Coding sequence (CDS)

ATGCTTAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCCAAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAGAAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGATATACACTAA

Protein sequence

MLSANARQPSSTTKKLQATIRASSDEESLLRHHLLHPNTTLNHLITKYGSRLVPKLVELDPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSNHGGYDIH
Homology
[Close]
BLAST of Lsi06G005960 vs. TrEMBL
Match: A0A0A0M2Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629180 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-14
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 1 

Query: 44  LITKYGSRLVPKLVELDPPS-PLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELDPPS P P S EIR+EEGN MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDPPSSPTPMSPEIRLEEGNGMVKLFGVPIRGKKRVLPEESEV 257

[Close]
BLAST of Lsi06G005960 vs. NCBI nr
Match: gi|449442594|ref|XP_004139066.1| (PREDICTED: heat stress transcription factor B-4b-like [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-14
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 1 

Query: 44  LITKYGSRLVPKLVELDPPS-PLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELDPPS P P S EIR+EEGN MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDPPSSPTPMSPEIRLEEGNGMVKLFGVPIRGKKRVLPEESEV 257

[Close]
BLAST of Lsi06G005960 vs. NCBI nr
Match: gi|659098861|ref|XP_008450326.1| (PREDICTED: heat stress transcription factor B-4b-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 9.3e-13
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1 

Query: 44  LITKYGSRLVPKLVELDPPS-PLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELD PS P+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDSPSSPMPMSPEIRLEEGSGMVKLFGVPIRGKKRVLPEESEV 257

The following BLAST results are available for this feature:
BLAST of Lsi06G005960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G005960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2Y7_CUCSA4.5e-1479.31Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629180 PE=3 SV=1[more]
BLAST of Lsi06G005960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G005960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442594|ref|XP_004139066.1|6.4e-1479.31PREDICTED: heat stress transcription factor B-4b-like [Cucumis sativus][more]
gi|659098861|ref|XP_008450326.1|9.3e-1375.86PREDICTED: heat stress transcription factor B-4b-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009408 response to heat
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G005960.1Lsi06G005960.1mRNA