Lsi06G005940 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G005940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ralf-like 9
Location	chr06 : 8126501 .. 8130390 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTCTTTGGTTTGGAGAGTTTCGTTTGGCGTGTGGGTCTCGATTTCAAGGGCTGGTTTCAGACGTTCTTGGTCTCGATTTCATAGACTATTTTCTGCTCGTGGGTCTCTCGGTATAGTGGATGTTTGGCCGGCAGTAAAGTCAGGTCCGACAAACAATTGCTCAGGCGATTGGTCTTGGTCAAGAGGCGGAATAATCGTGGTTTTATTCTTCTTGAATGAATAAATTGCAGATTGTTGATTTTTTCTAATTTTTGTAATTGTGTTTTCTCTTTTGTTTATCGCTTTCAATTTTTTTTTGCTGGCTATTGCTTCTGTTTGGGTGTATTATGGAATCTGTTTATATTTTACAAAGAGATTTAATTGCAATTGATTTTTTCAAATTGTTTGTTATACAATCATAGTATTTTTTTGTTCCAAACTCTTAAAGTTATTTTTATCTATTTAAAACTCATAAAAGTGGTTTTCATCTTTCTTGAGTAAAACAGATGGTTTTTCTTAGCCAAATTCCAAATTCCAAAAACTATTTTTTTTAGTTTTTAAAACTTGGTCTGGTTTTTAAAAATATTGACGGAAAGTAGATAATAAAGCAAGAAATTTAAAAGTGGCATGGGTATTTACATGTTTAATTTTTAAAAATAAAAAATCCAAATCTAAATGTTTATTGAAGAATTAGTGAATCTCAATCTGCTTTATATATGTCAAACAAAATGTTAAAGCATAATGAATAACAAGATGAGTAACACTGTAATAAAAGTAAAGGAACACAGGAATTGGTAGCTCAATTTGGTACAAAGTCAGATACGTTTGGGGGGTTGTTTTCTAATGGAAAAAAACTTAACTAATGAAAAAAAATTCAACAATGTAATACTTATTTGTAAGAAACACTATAAACACGTTTGAGAATTAATACATGGATGATTTCCAAAGGTAGTATTGTATTGGAGAGCCTAAATTGATTAGTTTAAGAAATTTAGGAGTTTAGTTTACTCAAATTATAAGTTCGACTTGATATATATTGGTCATACAAAATCTGGAGGAGGGCATAAATAGATCCACTTAAGAAAGTTCATAGTTTAAATTGATATAATTATTAGTAAATTTAAGGGTATAAATTGATATCTACCCTAAATAAATCAAGCATGTCAGTGTGATGCTGCACATTTTCATTTGGGATGGTATCGGATTTGAGTATACACAACTCAACGACTTTTGATTGATAGAATTTAATCCATTCAAATTCAAACCAACAAGGATTCATATCTATTTTTTGGTATGAATTGTTGGTAATGCTCACTCTTGCCCTTTTTTTGGATTAAGTTATGTGATGGAATCTAGATGCCCAAGTTTGGAATATCCTTGTTGGGTGTAGTTTTGGATTGATTATTCAAAGTTAAGGTTGTGGTCCGATGAAATTAATGTTTTTTTGGGTAATCTTTCAGATAACTTTTGGGTAAGTTGTCAACTTCCAAGAATTTAATTAGATATTTTGGTTGCCTAAATTCTTTGATTGAATTGGGTATTGTTCTGGTTGGGGGAAAATAAATTATTGCAGAATATACATAAACTCTATGAAATGTTTATGTTTCGATATCCACATCTTGAGCTACCGATAACACTCCAAAAGTGTTATCTTAGGACATACTATTTAGCTACTTTTGTGATTAATTTGTGTTCTTTGATGTCATTTATGGTTGATTTTGTAAAGACCGAGCCATTGTCATCGGAAACCATTGCATACCATATAGAAATCGATTTGTGTGATTGCGTAGCATATAATTGCTCGCTTATCATTTTCTAAGTGATCGTGGAGCATGCAAGCGACCACATACAATAAGGTAAACTATTGCTTATGTACTATGTGGTCAATGATTATGTACCTTACGTTATGCAATTGTTAAACATAGGCGAACGGATACCTAATGTCGTTCGTATCTGAGTAAGATAAATGAGCATCTTCTTTCTCAAGACGTTGGAAATGAATTATAAAACTGATGAAGATTGTTTCCTATTTCAAGTGCAAATTATTCAAAATTGTGACCGATATCAATATACTGCAGTAAATGAAAAAACGTTTAAAGTTCATTAAAGGTTACGCGCCTAGGGTTTCTTATTGGGACGAACGATAAATTAGAAAACCTAAATCTATCATGCAATTAACCTCTTGAACTAATTAGTTAATAAATGTCATTATAAAGATAGACCCTAATTAAACATTTATGCCCTAATCGTGTTACATGAATCAATTGTTTAATGCAAGCGCCAATTGAATATAGCAAACAACAAAATATTCATTTAGAGTTGCCAATTCTAACAAATGTTTTAAGGTAAATTCATTCAAATTCAAGGAGTTCATAGTAGGTAAAAGCAATATAAACAAATCCTCAAGAAAATTTAAAGTCTAGAATCCTATCCCCAAGTATAGATTACCTTAGCCACTCATCATCTTCATGATTCTTCAATGTTTTGAGGAGGGAATTCAAGAAAATAGAAGCTAGGATTCAAAGAGGGAAGAAGGAGATGAGAAAATTCAGAGTTTTTCTATAGTGGCCGCCCAAAATCAGAGTGATTTAACCTAAAATCCCGGGCCCTTAAATAAAAATTTCGCCAAGAGCGTCGCGACGCTGCGGAAGAGCATAGCAACACTGGTCTAAATAATCGCAGTGTAACGCTACACTTGATAGAGCGTCGCGAAACTGTAAGCGATGTGCAAATTTTTTAGCTCTCGGGTGGACAACGTACAAGGGGCGTAAAGCAAGTGCAACGACACTATCTTCAGGGGCATTTTGATAATTTTGCATCCAAACTTGGTTGATGCATTCGGGACTCCGTTTAAATGCGTTTTAGCTCCAAAATGATTCTGATGGGCTGGTTATCCACCTTTATGCTCAAATCCTACAAAACATTGGAAATAGACTTATAAACTTAGGAAACGAGCCCAAATTATGCCGGGAAAAATGACACTCTTACGGTGCCATCAAGCTTACCTATGTCAATGAAAAACTATTAGCCCTACAAAACTAGGCTAATGAACTCTACATTTATCCCTAAATATTCATGTTATATTCTCCACTTTCTATTAAAATTTTAAAAAACTAAGCCAAAGTTTAAAAATTAAAAAGAAAATGAAGTAGGTTTTCAAGAACTTGTTTGTTTTTAGATTGCCTTATTATTTTCCTAACACTTGCAGGCTCACATTTTCTTCCCCCACCTATTATGTAATTTTGTTATTGTACGAATATATTGTCAAAAGGATAGTCTTACTTGCTAACAAAATATTTTTGCAAATAATATGCTATTTTTTTTACAAACAAATTGAAGATTGTTTTGTTAGCACTAGTTATTTTTGTAATTTCCTATTTAAGGAATAAAACATTGTTGTCATTTGGTTTAACCTACAATGTTGGCAAAATATTAACCATAACATTGGAACGTGTTCTTCCTCGGTAAGATTCTAACAAGATAAACATATGCAACAACTAGTAAAACCATCTCATATTAAAAATGGCTATTTTGCATATATAAATATTCTTACCTTTTGAAGTCTACCCTATCGCAAGTGCCTCGCGTTTTAAGTTTTGTAATAGATTTTGTTATCAATGATGACCATGTCAAAGGGAATCACACTTGTTTTTATCGGGATTCTCTTGGTTAACTTTGACATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAACTAACTCCTGCAAATCCATATCAAAGAGGCTGCAGTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGATGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCATAA

mRNA sequence

ATGTGGATTTTGTTATCAATGATGACCATGTCAAAGGGAATCACACTTGTTTTTATCGGGATTCTCTTGGTTAACTTTGACATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAACTAACTCCTGCAAATCCATATCAAAGAGGCTGCAGTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGATGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCATAA

Coding sequence (CDS)

ATGTGGATTTTGTTATCAATGATGACCATGTCAAAGGGAATCACACTTGTTTTTATCGGGATTCTCTTGGTTAACTTTGACATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAACTAACTCCTGCAAATCCATATCAAAGAGGCTGCAGTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGATGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCATAA

Protein sequence

MWILLSMMTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEDVASTSPAMSPNA

Homology

[Close]

BLAST of Lsi06G005940 vs. Swiss-Prot
Match: RLF9_ARATH (Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-10
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTN--ATDYIGYDPI-KGDISPGCSKKHPELCKLTPA 67
          M MSK I ++ + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   A
Sbjct: 1  MGMSKSIKVI-LSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEA 60

Query: 68 NPYQRGCSAINRCRGG 81
          NPYQRGC  INRCRGG
Sbjct: 61 NPYQRGCEKINRCRGG 75

[Close]

BLAST of Lsi06G005940 vs. Swiss-Prot
Match: RLF15_ARATH (Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTN--ATDYIGYDPIK-GDISPGCSKKHPELCKLTPA 67
          M MSK I ++ + + L+ F  +  T   AT YI Y  +  GD +  C K HP  CK   A
Sbjct: 1  MGMSKSIKVI-VSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVA 60

Query: 68 NPYQRGCSAINRCR 79
          NPY+RGC  I RCR
Sbjct: 61 NPYRRGCGTIERCR 73

[Close]

BLAST of Lsi06G005940 vs. Swiss-Prot
Match: RLF29_ARATH (Protein RALF-like 29 OS=Arabidopsis thaliana GN=RALFL29 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-06
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 1


Query: 10 MSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPY 69
          M K   + F+ IL+V    I   +A  YI Y PI+ D+  GC  + P     K TPANPY
Sbjct: 1  MIKTKEVTFVTILIVLCVFISTIHAKRYIEY-PIRLDLGKGCDPRFPTAACYKRTPANPY 60

Query: 70 QRGCSAINRCR 79
          +R C+  NRCR
Sbjct: 61 RRPCTTANRCR 70

[Close]

BLAST of Lsi06G005940 vs. TrEMBL
Match: A0A0A0L8B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 8   MTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANP 67
           M MSK +TLVFIGILLV+FDMI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANP
Sbjct: 1   MIMSKRMTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANP 60

Query: 68  YQRGCSAINRCRGGNDIIDG----VEDVASTSPAMSPN 101
           YQRGC+ I+RCR GNDIID     +E  AS SP++SPN
Sbjct: 61  YQRGCNRIDRCREGNDIIDAEEEHIEGDASISPSISPN 98

[Close]

BLAST of Lsi06G005940 vs. TrEMBL
Match: D0VNY5_BRARC (RALF OS=Brassica rapa var. parachinensis PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-06
Identity = 31/72 (43.06%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPY 67
          M MS+ I +V    L+V   +      + YI Y  + GD S  C K HP  CK   ANPY
Sbjct: 1  MGMSESIKVVVSLFLVVLLALAATQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPY 60

Query: 68 QRGCSAINRCRG 80
           RGC  I+RCRG
Sbjct: 61 TRGCETIDRCRG 72

[Close]

BLAST of Lsi06G005940 vs. TrEMBL
Match: D7KVJ4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893358 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-06
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEV-TNATDYIGYDPIK-GDISPGCSKKHPELCKLTPAN 67
          M MSK I ++    L+V   +  +   AT YI Y  I  GD +  C K HP  CK   AN
Sbjct: 1  MGMSKSIKVILSLALVVFLALASIKVEATRYITYPSINHGDHATHCDKAHPNTCKKKEAN 60

Query: 68 PYQRGCSAINRCRGGN 82
          PY+RGC  + RCRGG+
Sbjct: 61 PYKRGCEILERCRGGS 76

[Close]

BLAST of Lsi06G005940 vs. TrEMBL
Match: A0A078FI75_BRANA (BnaA09g13680D protein OS=Brassica napus GN=BnaA09g13680D PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 30/72 (41.67%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPY 67
          M MS+ I ++    L+V   +      + YI Y  + GD S  C K HP  CK   ANPY
Sbjct: 1  MGMSESIKVIVSLFLVVLLALAATQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPY 60

Query: 68 QRGCSAINRCRG 80
           RGC  I+RCRG
Sbjct: 61 TRGCETIDRCRG 72

[Close]

BLAST of Lsi06G005940 vs. TrEMBL
Match: A5A3I0_BRACM (MF14 OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 30/72 (41.67%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPY 67
          M MS+ I ++    L+V   +      + YI Y  + GD S  C K HP  CK   ANPY
Sbjct: 1  MGMSESIKVIVSLFLVVLLALAGTQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPY 60

Query: 68 QRGCSAINRCRG 80
           RGC  I+RCRG
Sbjct: 61 TRGCETIDRCRG 72

[Close]

BLAST of Lsi06G005940 vs. TAIR10
Match: AT1G61566.1 (AT1G61566.1 ralf-like 9)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTN--ATDYIGYDPI-KGDISPGCSKKHPELCKLTPA 67
          M MSK I ++ + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   A
Sbjct: 1  MGMSKSIKVI-LSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEA 60

Query: 68 NPYQRGCSAINRCRGG 81
          NPYQRGC  INRCRGG
Sbjct: 61 NPYQRGCEKINRCRGG 75

[Close]

BLAST of Lsi06G005940 vs. TAIR10
Match: AT2G22055.1 (AT2G22055.1 RALF-like 15)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-08
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTN--ATDYIGYDPIK-GDISPGCSKKHPELCKLTPA 67
          M MSK I ++ + + L+ F  +  T   AT YI Y  +  GD +  C K HP  CK   A
Sbjct: 1  MGMSKSIKVI-VSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVA 60

Query: 68 NPYQRGCSAINRCR 79
          NPY+RGC  I RCR
Sbjct: 61 NPYRRGCGTIERCR 73

[Close]

BLAST of Lsi06G005940 vs. TAIR10
Match: AT4G11653.1 (AT4G11653.1 RALF-like 29)

HSP 1 Score: 52.0 bits (123), Expect = 2.5e-07
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 1


Query: 10 MSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPY 69
          M K   + F+ IL+V    I   +A  YI Y PI+ D+  GC  + P     K TPANPY
Sbjct: 1  MIKTKEVTFVTILIVLCVFISTIHAKRYIEY-PIRLDLGKGCDPRFPTAACYKRTPANPY 60

Query: 70 QRGCSAINRCR 79
          +R C+  NRCR
Sbjct: 61 RRPCTTANRCR 70

[Close]

BLAST of Lsi06G005940 vs. TAIR10
Match: AT2G32885.1 (AT2G32885.1 Rapid alkalinization factor (RALF) family protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.3e-07
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 1


Query: 15 TLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAI 74
          T+V    L++   ++  T   + IG   ++ D+  GC+      CK+ PANPY+ GC A 
Sbjct: 7  TVVQSFALIIIISIVMSTTEANSIGAPAMREDLPKGCAPGSSAGCKMQPANPYKPGCEAS 66

Query: 75 NRCRGG 81
           RCRGG
Sbjct: 67 QRCRGG 72

[Close]

BLAST of Lsi06G005940 vs. TAIR10
Match: AT2G34825.1 (AT2G34825.1 RALF-like 20)

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06
Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPY 67
          M +SK   +    ++++   ++  T A   IG   ++ D   GC    P  CK+ PANPY
Sbjct: 1  MVLSKKTIMQSFALMIILSIVMSTTEAKT-IGNPAMREDEPKGCPPGSPASCKMQPANPY 60

Query: 68 QRGCSAINRCRG 80
          + GC A  RCRG
Sbjct: 61 KPGCEASQRCRG 71

[Close]

BLAST of Lsi06G005940 vs. NCBI nr
Match: gi|700202865|gb|KGN57998.1| (hypothetical protein Csa_3G426350 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 8   MTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANP 67
           M MSK +TLVFIGILLV+FDMI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANP
Sbjct: 1   MIMSKRMTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANP 60

Query: 68  YQRGCSAINRCRGGNDIIDG----VEDVASTSPAMSPN 101
           YQRGC+ I+RCR GNDIID     +E  AS SP++SPN
Sbjct: 61  YQRGCNRIDRCREGNDIIDAEEEHIEGDASISPSISPN 98

[Close]

BLAST of Lsi06G005940 vs. NCBI nr
Match: gi|18407238|ref|NP_564779.1| (protein RALF-like 9 [Arabidopsis thaliana])

HSP 1 Score: 65.5 bits (158), Expect = 6.2e-08
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTN--ATDYIGYDPI-KGDISPGCSKKHPELCKLTPA 67
          M MSK I ++ + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   A
Sbjct: 1  MGMSKSIKVI-LSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEA 60

Query: 68 NPYQRGCSAINRCRGG 81
          NPYQRGC  INRCRGG
Sbjct: 61 NPYQRGCEKINRCRGG 75

[Close]

BLAST of Lsi06G005940 vs. NCBI nr
Match: gi|21592626|gb|AAM64575.1| (unknown [Arabidopsis thaliana])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTN--ATDYIGYDPI-KGDISPGCSKKHPELCKLTPA 67
          M MSK I ++ + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   A
Sbjct: 1  MGMSKSIKVI-LSLALVVFLALAGTKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKQA 60

Query: 68 NPYQRGCSAINRCRGG 81
          NPYQRGC  INRCRGG
Sbjct: 61 NPYQRGCEKINRCRGG 75

[Close]

BLAST of Lsi06G005940 vs. NCBI nr
Match: gi|262093030|gb|ACY25867.1| (RALF [Brassica rapa var. parachinensis])

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 31/72 (43.06%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPY 67
          M MS+ I +V    L+V   +      + YI Y  + GD S  C K HP  CK   ANPY
Sbjct: 1  MGMSESIKVVVSLFLVVLLALAATQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPY 60

Query: 68 QRGCSAINRCRG 80
           RGC  I+RCRG
Sbjct: 61 TRGCETIDRCRG 72

[Close]

BLAST of Lsi06G005940 vs. NCBI nr
Match: gi|297837299|ref|XP_002886531.1| (hypothetical protein ARALYDRAFT_893358 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 33/76 (43.42%), Postives = 42/76 (55.26%), Query Frame = 1


Query: 8  MTMSKGITLVFIGILLVNFDMIEV-TNATDYIGYDPIK-GDISPGCSKKHPELCKLTPAN 67
          M MSK I ++    L+V   +  +   AT YI Y  I  GD +  C K HP  CK   AN
Sbjct: 1  MGMSKSIKVILSLALVVFLALASIKVEATRYITYPSINHGDHATHCDKAHPNTCKKKEAN 60

Query: 68 PYQRGCSAINRCRGGN 82
          PY+RGC  + RCRGG+
Sbjct: 61 PYKRGCEILERCRGGS 76

The following BLAST results are available for this feature:

BLAST of Lsi06G005940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF9_ARATH	3.9e-10	50.00	Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1	[more]
RLF15_ARATH	5.3e-07	43.24	Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1	[more]
RLF29_ARATH	4.5e-06	42.25	Protein RALF-like 29 OS=Arabidopsis thaliana GN=RALFL29 PE=3 SV=1	[more]

BLAST of Lsi06G005940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8B1_CUCSA	1.1e-24	63.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1	[more]
D0VNY5_BRARC	1.8e-06	43.06	RALF OS=Brassica rapa var. parachinensis PE=4 SV=1	[more]
D7KVJ4_ARALL	1.8e-06	43.42	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A078FI75_BRANA	2.4e-06	41.67	BnaA09g13680D protein OS=Brassica napus GN=BnaA09g13680D PE=4 SV=1	[more]
A5A3I0_BRACM	3.1e-06	41.67	MF14 OS=Brassica campestris PE=2 SV=1	[more]

BLAST of Lsi06G005940 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61566.1	2.2e-11	50.00	ralf-like 9	[more]
AT2G22055.1	3.0e-08	43.24	RALF-like 15	[more]
AT4G11653.1	2.5e-07	42.25	RALF-like 29	[more]
AT2G32885.1	7.3e-07	36.36	Rapid alkalinization factor (RALF) family protein	[more]
AT2G34825.1	3.6e-06	34.72	RALF-like 20	[more]

BLAST of Lsi06G005940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202865\|gb\|KGN57998.1\|	1.6e-24	63.27	hypothetical protein Csa_3G426350 [Cucumis sativus]	[more]
gi\|18407238\|ref\|NP_564779.1\|	6.2e-08	50.00	protein RALF-like 9 [Arabidopsis thaliana]	[more]
gi\|21592626\|gb\|AAM64575.1\|	1.4e-07	50.00	unknown [Arabidopsis thaliana]	[more]
gi\|262093030\|gb\|ACY25867.1\|	2.6e-06	43.06	RALF [Brassica rapa var. parachinensis]	[more]
gi\|297837299\|ref\|XP_002886531.1\|	2.6e-06	43.42	hypothetical protein ARALYDRAFT_893358 [Arabidopsis lyrata subsp. lyrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005940.1	Lsi06G005940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 33..79 score: 1.6
None	No IPR available	PANTHER	PTHR34270	FAMILY NOT NAMED	coord: 8..90 score: 4.7
None	No IPR available	PANTHER	PTHR34270:SF1	PROTEIN RALF-LIKE 10-RELATED	coord: 8..90 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G005940	Silver-seed gourd	carlsiB807
Lsi06G005940	Silver-seed gourd	carlsiB886
Lsi06G005940	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G005940	Watermelon (97103) v2	lsiwmbB365
Lsi06G005940	Wax gourd	lsiwgoB520
Lsi06G005940	Cucumber (Gy14) v1	cgylsiB573
Lsi06G005940	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G005940	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G005940	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G005940	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G005940	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G005940	Cucurbita pepo (Zucchini)	cpelsiB563
Lsi06G005940	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G005940	Cucumber (Chinese Long) v2	culsiB058
Lsi06G005940	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G005940	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G005940	Watermelon (97103) v1	lsiwmB397
Lsi06G005940	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G005940	Melon (DHL92) v3.6.1	lsimedB418