Lsi06G005920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G005920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptionralf-like 9
Locationchr06 : 8100664 .. 8100903 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAATTAACTCCTGCAAATCCATATCAAAGAGGTTGCAGTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGAGGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCAGAACTGCATCTTCATTGA

mRNA sequence

ATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAATTAACTCCTGCAAATCCATATCAAAGAGGTTGCAGTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGAGGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCAGAACTGCATCTTCATTGA

Coding sequence (CDS)

ATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAATTAACTCCTGCAAATCCATATCAAAGAGGTTGCAGTGCAATCAATCGTTGCAGAGGAGGAAATGATATTATAGATGGTGTAGAAGAGGTTGCATCCACTAGCCCCGCAATGAGCCCTAATGCAGAACTGCATCTTCATTGA

Protein sequence

MIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDGVEEVASTSPAMSPNAELHLH
Homology
[Close]
BLAST of Lsi06G005920 vs. Swiss-Prot
Match: RLF9_ARATH (Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-09
Identity = 29/48 (60.42%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 7  ATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG 54
          AT YI Y  I +GD +  C K HP  CK   ANPYQRGC  INRCRGG
Sbjct: 28 ATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCRGG 75

[Close]
BLAST of Lsi06G005920 vs. Swiss-Prot
Match: RLF15_ARATH (Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-06
Identity = 24/46 (52.17%), Postives = 27/46 (58.70%), Query Frame = 1 

Query: 7  ATDYIGYDPIK-GDISPGCSKKHPELCKLTPANPYQRGCSAINRCR 52
          AT YI Y  +  GD +  C K HP  CK   ANPY+RGC  I RCR
Sbjct: 28 ATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGTIERCR 73

[Close]
BLAST of Lsi06G005920 vs. TrEMBL
Match: A0A0A0L8B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.1e-18
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 1   MIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDG 60
           MI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANPYQRGC+ I+RCR GNDIID 
Sbjct: 21  MIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIIDA 80

Query: 61  VEE----VASTSPAMSPNAE 76
            EE     AS SP++SPN E
Sbjct: 81  EEEHIEGDASISPSISPNIE 100

[Close]
BLAST of Lsi06G005920 vs. TrEMBL
Match: V4UF46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018043mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-06
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 1 

Query: 11 IGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG 53
          IGY  I    +PGCS  HPELCK+ P NPY RGC    +CRG
Sbjct: 33 IGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

[Close]
BLAST of Lsi06G005920 vs. TrEMBL
Match: A0A067F0E4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041712mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-06
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 1 

Query: 11 IGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG 53
          IGY  I    +PGCS  HPELCK+ P NPY RGC    +CRG
Sbjct: 33 IGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

[Close]
BLAST of Lsi06G005920 vs. TrEMBL
Match: D7KVJ4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893358 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 26/49 (53.06%), Postives = 30/49 (61.22%), Query Frame = 1 

Query: 7  ATDYIGYDPIK-GDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGN 55
          AT YI Y  I  GD +  C K HP  CK   ANPY+RGC  + RCRGG+
Sbjct: 28 ATRYITYPSINHGDHATHCDKAHPNTCKKKEANPYKRGCEILERCRGGS 76

[Close]
BLAST of Lsi06G005920 vs. TAIR10
Match: AT1G61566.1 (AT1G61566.1 ralf-like 9)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 29/48 (60.42%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 7  ATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG 54
          AT YI Y  I +GD +  C K HP  CK   ANPYQRGC  INRCRGG
Sbjct: 28 ATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCRGG 75

[Close]
BLAST of Lsi06G005920 vs. TAIR10
Match: AT2G22055.1 (AT2G22055.1 RALF-like 15)

HSP 1 Score: 52.0 bits (123), Expect = 2.0e-07
Identity = 24/46 (52.17%), Postives = 27/46 (58.70%), Query Frame = 1 

Query: 7  ATDYIGYDPIK-GDISPGCSKKHPELCKLTPANPYQRGCSAINRCR 52
          AT YI Y  +  GD +  C K HP  CK   ANPY+RGC  I RCR
Sbjct: 28 ATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGTIERCR 73

[Close]
BLAST of Lsi06G005920 vs. TAIR10
Match: AT2G32885.1 (AT2G32885.1 Rapid alkalinization factor (RALF) family protein)

HSP 1 Score: 50.4 bits (119), Expect = 5.7e-07
Identity = 21/49 (42.86%), Postives = 28/49 (57.14%), Query Frame = 1 

Query: 5  TNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG 54
          T   + IG   ++ D+  GC+      CK+ PANPY+ GC A  RCRGG
Sbjct: 24 TTEANSIGAPAMREDLPKGCAPGSSAGCKMQPANPYKPGCEASQRCRGG 72

[Close]
BLAST of Lsi06G005920 vs. TAIR10
Match: AT2G34825.1 (AT2G34825.1 RALF-like 20)

HSP 1 Score: 48.5 bits (114), Expect = 2.2e-06
Identity = 21/48 (43.75%), Postives = 25/48 (52.08%), Query Frame = 1 

Query: 5  TNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG 53
          T     IG   ++ D   GC    P  CK+ PANPY+ GC A  RCRG
Sbjct: 24 TTEAKTIGNPAMREDEPKGCPPGSPASCKMQPANPYKPGCEASQRCRG 71

[Close]
BLAST of Lsi06G005920 vs. TAIR10
Match: AT4G11653.1 (AT4G11653.1 RALF-like 29)

HSP 1 Score: 48.5 bits (114), Expect = 2.2e-06
Identity = 24/52 (46.15%), Postives = 30/52 (57.69%), Query Frame = 1 

Query: 2  IEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPYQRGCSAINRCR 52
          I   +A  YI Y PI+ D+  GC  + P     K TPANPY+R C+  NRCR
Sbjct: 20 ISTIHAKRYIEY-PIRLDLGKGCDPRFPTAACYKRTPANPYRRPCTTANRCR 70

[Close]
BLAST of Lsi06G005920 vs. NCBI nr
Match: gi|700202865|gb|KGN57998.1| (hypothetical protein Csa_3G426350 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 1   MIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGGNDIIDG 60
           MI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANPYQRGC+ I+RCR GNDIID 
Sbjct: 21  MIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIIDA 80

Query: 61  VEE----VASTSPAMSPNAE 76
            EE     AS SP++SPN E
Sbjct: 81  EEEHIEGDASISPSISPNIE 100

[Close]
BLAST of Lsi06G005920 vs. NCBI nr
Match: gi|18407238|ref|NP_564779.1| (protein RALF-like 9 [Arabidopsis thaliana])

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 29/48 (60.42%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 7  ATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG 54
          AT YI Y  I +GD +  C K HP  CK   ANPYQRGC  INRCRGG
Sbjct: 28 ATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCRGG 75

[Close]
BLAST of Lsi06G005920 vs. NCBI nr
Match: gi|21592626|gb|AAM64575.1| (unknown [Arabidopsis thaliana])

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 29/48 (60.42%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 7  ATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRGG 54
          AT YI Y  I +GD +  C K HP  CK   ANPYQRGC  INRCRGG
Sbjct: 28 ATRYITYPAIDRGDHAVHCDKAHPNTCKKKQANPYQRGCEKINRCRGG 75

[Close]
BLAST of Lsi06G005920 vs. NCBI nr
Match: gi|567910725|ref|XP_006447676.1| (hypothetical protein CICLE_v10018043mg [Citrus clementina])

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-06
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 1 

Query: 11 IGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCSAINRCRG 53
          IGY  I    +PGCS  HPELCK+ P NPY RGC    +CRG
Sbjct: 33 IGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

The following BLAST results are available for this feature:
BLAST of Lsi06G005920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF9_ARATH2.6e-0960.42Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1[more]
RLF15_ARATH3.5e-0652.17Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1[more]
BLAST of Lsi06G005920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B1_CUCSA8.1e-1860.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1[more]
V4UF46_9ROSI5.4e-0657.14Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018043mg PE=4 SV=1[more]
A0A067F0E4_CITSI5.4e-0657.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041712mg PE=4 SV=1[more]
D7KVJ4_ARALL7.1e-0653.06Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
BLAST of Lsi06G005920 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G61566.11.5e-1060.42 ralf-like 9[more]
AT2G22055.12.0e-0752.17 RALF-like 15[more]
AT2G32885.15.7e-0742.86 Rapid alkalinization factor (RALF) family protein[more]
AT2G34825.12.2e-0643.75 RALF-like 20[more]
AT4G11653.12.2e-0646.15 RALF-like 29[more]
BLAST of Lsi06G005920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202865|gb|KGN57998.1|1.2e-1760.00hypothetical protein Csa_3G426350 [Cucumis sativus][more]
gi|18407238|ref|NP_564779.1|4.1e-0760.42protein RALF-like 9 [Arabidopsis thaliana][more]
gi|21592626|gb|AAM64575.1|4.1e-0760.42unknown [Arabidopsis thaliana][more]
gi|567910725|ref|XP_006447676.1|7.8e-0657.14hypothetical protein CICLE_v10018043mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0004871 signal transducer activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G005920.1Lsi06G005920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 6..52
score: 1.5
NoneNo IPR availablePANTHERPTHR34270FAMILY NOT NAMEDcoord: 1..63
score: 1.2
NoneNo IPR availablePANTHERPTHR34270:SF1PROTEIN RALF-LIKE 10-RELATEDcoord: 1..63
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G005920Cucumber (Gy14) v2cgyblsiB055
Lsi06G005920Melon (DHL92) v3.6.1lsimedB418
Lsi06G005920Silver-seed gourdcarlsiB807
Lsi06G005920Silver-seed gourdcarlsiB886
Lsi06G005920Cucumber (Chinese Long) v3cuclsiB068
Lsi06G005920Watermelon (97103) v2lsiwmbB365
Lsi06G005920Wax gourdlsiwgoB520
Lsi06G005920Cucumber (Gy14) v1cgylsiB573
Lsi06G005920Cucurbita maxima (Rimu)cmalsiB073
Lsi06G005920Cucurbita maxima (Rimu)cmalsiB128
Lsi06G005920Cucurbita moschata (Rifu)cmolsiB059
Lsi06G005920Cucurbita moschata (Rifu)cmolsiB118
Lsi06G005920Cucurbita pepo (Zucchini)cpelsiB299
Lsi06G005920Cucurbita pepo (Zucchini)cpelsiB563
Lsi06G005920Wild cucumber (PI 183967)cpilsiB059
Lsi06G005920Cucumber (Chinese Long) v2culsiB058
Lsi06G005920Melon (DHL92) v3.5.1lsimeB396
Lsi06G005920Watermelon (Charleston Gray)lsiwcgB364
Lsi06G005920Watermelon (97103) v1lsiwmB397