Lsi06G004710 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G004710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 5449009 .. 5450441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTAAGAGAGATTGACGAACCGCCTGTAAGATTGGAAATTGAAATTTAGCCTCAAGTCGTGCCTTTCTAGCCAAAAGCTTCCATGGTTCACAGAAGGAAACAAAGACAAGCAATGAAGAATTGACAGTGATGAATTGATTGTTGAACATGCCTGGATTCATTATTGGAACGAAATGCTTAAGAAGAGAAATGTAGGAGTAACTTGATGCAGATAATGCCGCTAGGTAACCTTTCCTGGATGTCTCTAAGAGAGGTTTACTTACCTGTTAACAATGTGAATCTTTATTATGAAGATGCCAAATGGTATATTTATATGAATTATAGAAAGTGGATACCTCTGGCCCATTTGCGAGTGAATGTACAAGGATGTCAATGGTTCCAAAATCCTTCTTTACTGATTCTGCTACTTCCTGAAATCCATTAAAATCACTGATATTATGGAAGAAAAAATACAGACCTGAAAGTTTAAGCTTATAAGTTAGGACGTATTTCATCTTAAAACTCCTCCTCACTTGTAGTTTGAAAATGAGCACGAGGCACACAAGTGATTGTTAATCTTAATTGGGGAGTACAATATATTACAAAGTCAGGAGATTATTTTGAACTGCATTATACTAGTACTAAATCAATGAGCTCAAGTTGATAGGTTAGAGTACAATTTGTCTAAAAGAATTCTGGGAACTGTATGAACTCAAATAAACAAAGTGAAGATTACTTTCATTAGAATGTACTAAATCAAAGGAATTAGTTTAAGTTGAAAGAGTGATGCATGTGCAAGGGAAAGTTCAGTACCTGAACTGTCCAATTAGTGGAACCTGCATACCGCTTATTTGTTTTTATCTGCATGAAATGAAATCAACACATGTTTATGATCTTTCGGTATGACTAATTGAATACCACGTGCGTTGCACGTGTTTATGATCTTTTGGTATGATTACAAAACAACAGGTAATGTCTGGCCTACATCTTCAGGAACATCCTCAGGACTGTCAAAAACTGCATCCAAGGGATATATTTTGGTGATCTCCATTAAAGATCCATCTGGTAACCTGAAACATCAAATTCTCAATAGCTGAAGGTACTATTAAGTTTTCCTCAGGTAAAATGTATTCAATATAGTTAGATATCTTACGCTCGAGATTCGTCAAACTTTCCACGTCGCAAGCTGGATTCAAAGATGTTTAAAGCCTAGATAAGATAACTCTAAACTCTTAATGAGAAGCTTAATAAAACATTTCCAAACCAGAGAAAAATTGCTATGGGATTATACTTACAGGCACCCACGTACCAACAATAATTTCAGCCCCGGCAGCAGCAAGAGATTTTGCTATTGCCCAACCATATCCATTATCATCAGCTACACCAGCAATAAATGCCCGCTTACCTAAACAAAATCCAAGTGTAGCTAAATTTGCTGAACTGATTTAG

mRNA sequence

ATGTATAAAGTGGATACCTCTGGCCCATTTGCGAGCACCCACGTACCAACAATAATTTCAGCCCCGGCAGCAGCAAGAGATTTTGCTATTGCCCAACCATATCCATTATCATCAGCTACACCAGCAATAAATGCCCGCTTACCTAAACAAAATCCAAGTGTAGCTAAATTTGCTGAACTGATTTAG

Coding sequence (CDS)

ATGTATAAAGTGGATACCTCTGGCCCATTTGCGAGCACCCACGTACCAACAATAATTTCAGCCCCGGCAGCAGCAAGAGATTTTGCTATTGCCCAACCATATCCATTATCATCAGCTACACCAGCAATAAATGCCCGCTTACCTAAACAAAATCCAAGTGTAGCTAAATTTGCTGAACTGATTTAG

Protein sequence

MYKVDTSGPFASTHVPTIISAPAAARDFAIAQPYPLSSATPAINARLPKQNPSVAKFAELI

Homology

[Close]

BLAST of Lsi06G004710 vs. TrEMBL
Match: A0A0V0XL08_9BILA (Uncharacterized protein (Fragment) OS=Trichinella patagoniensis GN=T12_197 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 1


Query: 11 ASTHVPTIISAPAAARDFAIAQPYPLSSATPAINARLP 49
          A THVPT ISAPAAAR  AIA PYPLSSATPAINA LP
Sbjct: 4  AGTHVPTRISAPAAARALAIAHPYPLSSATPAINALLP 41

[Close]

BLAST of Lsi06G004710 vs. NCBI nr
Match: gi|954299820|gb|KRX88682.1| (hypothetical protein T12_197, partial [Trichinella patagoniensis])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 1


Query: 11 ASTHVPTIISAPAAARDFAIAQPYPLSSATPAINARLP 49
          A THVPT ISAPAAAR  AIA PYPLSSATPAINA LP
Sbjct: 4  AGTHVPTRISAPAAARALAIAHPYPLSSATPAINALLP 41

The following BLAST results are available for this feature:

BLAST of Lsi06G004710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G004710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0V0XL08_9BILA	1.9e-06	84.21	Uncharacterized protein (Fragment) OS=Trichinella patagoniensis GN=T12_197 PE=4 ...	[more]

BLAST of Lsi06G004710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G004710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|954299820\|gb\|KRX88682.1\|	2.7e-06	84.21	hypothetical protein T12_197, partial [Trichinella patagoniensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G004710.1	Lsi06G004710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G004710	Watermelon (97103) v2	lsiwmbB365
Lsi06G004710	Wax gourd	lsiwgoB495
Lsi06G004710	Wax gourd	lsiwgoB527
Lsi06G004710	Bottle gourd (USVL1VR-Ls)	lsilsiB116
Lsi06G004710	Cucumber (Gy14) v1	cgylsiB032
Lsi06G004710	Cucumber (Gy14) v1	cgylsiB230
Lsi06G004710	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G004710	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G004710	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G004710	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G004710	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G004710	Cucurbita pepo (Zucchini)	cpelsiB563
Lsi06G004710	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G004710	Wild cucumber (PI 183967)	cpilsiB545
Lsi06G004710	Cucumber (Chinese Long) v2	culsiB058
Lsi06G004710	Cucumber (Chinese Long) v2	culsiB530
Lsi06G004710	Melon (DHL92) v3.5.1	lsimeB395
Lsi06G004710	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G004710	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G004710	Watermelon (97103) v1	lsiwmB396
Lsi06G004710	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G004710	Cucumber (Gy14) v2	cgyblsiB499
Lsi06G004710	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G004710	Silver-seed gourd	carlsiB155
Lsi06G004710	Silver-seed gourd	carlsiB424
Lsi06G004710	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G004710	Cucumber (Chinese Long) v3	cuclsiB566