Lsi06G004100 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G004100
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 4526906 .. 4528449 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATATGTGAAAGAGTTCATTCAAGAGTATGGAAATAAAATTGCTATATTTACAATTACTATTCGATCTTGCTGTTGTTTTTTTTTTCCTCTTTTAGTGTCAATTAAGTAGACTCCATCAAAAGTTAAAAAACTCAAGGCATGTGTCCACCGTCAAAAGTTCATTGGCTCAAATCTCGAACAAAAAAAAGTGCAAGTTGCAAAAATCATTCTTAAAATATGGGATTTTTTTAAAAAAAATAATGTTATTTCAATAAATAATGACAAAAATAGGATTGAGATAAAAATATTAACAAAAGTAGGATAACAAAATCGTGGATGGAGTCCACGATTTCCACCTGTCATCAAAATCGTGAGTAAAATGAGTACAGTCCACATGCGTGTCATGTGGGCTAATTTTATGAAATAGTGGACTCCGTCCACAATTTCCTTACCCATTTTTTTTATTATTTTTGTCATTATTTATTAAAATAACATTATTTTGAAAAACAATTCTAAAATATGGTGATAGTTATAATCACACTCAATTTTAACAATGATATAAGAGTAATTACAACTACCCATACTTAAGGTGGTTTTTGCAATTTATCCTAATAAAAGGTTGAAAAACTCTTTTGATCTCTATACTTTTATGAAAATAGCAATTTAGTTCAAGCTTTAGTTGGTAACAATTTAGTTTAATTTAATCCATATACTTCACAATTTATAATGATTTAGTCCATCTTGTGAAAAATATTATTAAGATTTAATAAAAATTTTGATGCATGTAGATCAATAAACTTATCAAAAATCAAATTTATTTATAAATTATAAAGAATAAGTCATTACCTAGTAAAAATTGACATTTAATTTTATATGAGACTTTTCATAATAGGGACTCTCTTTAACAATTTCAAAATATAGAAACTAAATTGTTACTGGTTAAAATTAGGCCCGGGCTGGTACTTAGTTTAGGAACAAATACATTGACTCAGACTATAATATCATCAATTCCCCACCTTGACTAATTTACAATGCAGAACAAACCATGTAAACAAGGCAAAATAATGGATTTAATGAGAAAAACTGATTAAAAAAAAACAGAAAATTTTAAATTCTTTAAACAAAAGCCACAATGGGAATTTGATTACATTGTTCATTACTTCCCTAAGAAAGTGAAGACATTCCAAGAAAGAGAACAAGATCAGTTCACCAGAAGGCCAAAATCTTATTGAAAATTTAAGTTTTTCTATCTTTCCTAAGGTAAAAGACACAGCATTCTCAAACTCACTTGGCACTGGCCAGTTGTGAGCGAAGGAGCTTAGCAGCAGCAACCATGTTGAGGAGGGCGGGCTTGACTTCGGTGTACTTTCGGGTTTTGAGACCGCAGTCGGGGTTCACCCAGAGGATGTTGCTTTCGAGAACAGCAAGCATCTTGTTGATCCTGTCGGCAATTTCGTCGGTCGAGGGGATACGGGGCGAATGGATGTCGTAGACTCCAGGTCCGATTCCAGCACCGTATTTTACTCCCTCACGAAAGACAGACAGAAGCTTCTCATCTGA

mRNA sequence

ATGAAATATGAGCTTAGCAGCAGCAACCATGTTGAGGAGGGCGGGCTTGACTTCGGTGTACTTTCGGGTTTTGAGACCGCAGTCGGGGTTCACCCAGAGGATGTTGCTTTCGAGAACAGCAAGCATCTTGTTGATCCTGTCGGCAATTTCGTCGGTCGAGGGGATACGGGGCGAATGGATGTCGTAGACTCCAGGTCCGATTCCAGCACCGTATTTTACTCCCTCACGAAAGACAGACAGAAGCTTCTCATCTGA

Coding sequence (CDS)

ATGAAATATGAGCTTAGCAGCAGCAACCATGTTGAGGAGGGCGGGCTTGACTTCGGTGTACTTTCGGGTTTTGAGACCGCAGTCGGGGTTCACCCAGAGGATGTTGCTTTCGAGAACAGCAAGCATCTTGTTGATCCTGTCGGCAATTTCGTCGGTCGAGGGGATACGGGGCGAATGGATGTCGTAGACTCCAGGTCCGATTCCAGCACCGTATTTTACTCCCTCACGAAAGACAGACAGAAGCTTCTCATCTGA

Protein sequence

MKYELSSSNHVEEGGLDFGVLSGFETAVGVHPEDVAFENSKHLVDPVGNFVGRGDTGRMDVVDSRSDSSTVFYSLTKDRQKLLI
BLAST of Lsi06G004100 vs. TrEMBL
Match: J3LR98_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.3e-13
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 1

Query: 16  LDFGVLSGFETAVGVHPEDVAFENSKHLVDPVGNFVGRGDTGRMDVVDSRSDSSTVFYSL 75
           L  GVL+G ETAV VHP+DV  E+ KHLVD VG+ +G GD+G +DVV +R+++S+V  +L
Sbjct: 187 LHLGVLAGLETAVRVHPKDVGVEHGKHLVDAVGDLLGGGDSGGVDVVHTRANASSVLDAL 246

Query: 76  TKDRQKLLI 85
           T+D Q+LL+
Sbjct: 247 TEDGQELLV 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
J3LR98_ORYBR8.3e-1355.07Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G004100.1Lsi06G004100.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None