Lsi06G002890 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G002890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 3330638 .. 3331116 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATATTGTCGTGGTACGTATTTAAGAATATTACTTTTCTTATATGTGTGTGTATGTAGTATTTATAATGATGTTTTGTTTGTGTTTGTATAGTGTTGCTTCGTGTTGGCCTACAATTTGACGTTGGCGGCCCACAAATGATTATTCCACCTCCTCCACCACACGTTCGTCTACAATCTGGTGTTGGCGGCCCTCATATGGTCATTCCACCTCCTCCACCACACGTTCCTCTACAATTTGATGTTGGCGGCCCTCAAATGATCATACCACCTCCTCCGCCACATGTACGTCCTCAATCAGATGCCGACGGTCCTCAAATGGTCATCCCACCTTCTTCGCTGTACGTTAGTCCACAGTCTAATGTCGGCAGCCCTGAAATGGTCATCCCACCTCCCCCATCGCATGTTCATCTACAGTTGGACGTTGGTGGCCCTCAAATGGTTATTCCACCTCCTCCATCGCACGTTCGTCCATAA

mRNA sequence

ATGTCATATTGTCGTGTGTTGCTTCGTGTTGGCCTACAATTTGACGTTGGCGGCCCACAAATGATTATTCCACCTCCTCCACCACACGTTCGTCTACAATCTGGTGTTGGCGGCCCTCATATGGTCATTCCACCTCCTCCACCACACGTTCCTCTACAATTTGATGTTGGCGGCCCTCAAATGATCATACCACCTCCTCCGCCACATGTACGTCCTCAATCAGATGCCGACGGTCCTCAAATGGTCATCCCACCTTCTTCGCTGTACGTTAGTCCACAGTCTAATGTCGGCAGCCCTGAAATGGTCATCCCACCTCCCCCATCGCATGTTCATCTACAGTTGGACGTTGGTGGCCCTCAAATGGTTATTCCACCTCCTCCATCGCACGTTCGTCCATAA

Coding sequence (CDS)

ATGTCATATTGTCGTGTGTTGCTTCGTGTTGGCCTACAATTTGACGTTGGCGGCCCACAAATGATTATTCCACCTCCTCCACCACACGTTCGTCTACAATCTGGTGTTGGCGGCCCTCATATGGTCATTCCACCTCCTCCACCACACGTTCCTCTACAATTTGATGTTGGCGGCCCTCAAATGATCATACCACCTCCTCCGCCACATGTACGTCCTCAATCAGATGCCGACGGTCCTCAAATGGTCATCCCACCTTCTTCGCTGTACGTTAGTCCACAGTCTAATGTCGGCAGCCCTGAAATGGTCATCCCACCTCCCCCATCGCATGTTCATCTACAGTTGGACGTTGGTGGCCCTCAAATGGTTATTCCACCTCCTCCATCGCACGTTCGTCCATAA

Protein sequence

MSYCRVLLRVGLQFDVGGPQMIIPPPPPHVRLQSGVGGPHMVIPPPPPHVPLQFDVGGPQMIIPPPPPHVRPQSDADGPQMVIPPSSLYVSPQSNVGSPEMVIPPPPSHVHLQLDVGGPQMVIPPPPSHVRP
BLAST of Lsi06G002890 vs. NCBI nr
Match: gi|778688596|ref|XP_011652788.1| (PREDICTED: formin-like protein 5 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1

Query: 13  QFDVGGPQMIIPPPPPHVRLQSGVGGPHMVIPPPPPHVPLQFDVGGPQMIIPPPPPHVRP 72
           Q DVGGPQM+IPPPPPH  L S VGGP MVIPPPPPH   Q DVGGPQM+IPPPPPH +P
Sbjct: 33  QSDVGGPQMVIPPPPPHHHLDSDVGGPQMVIPPPPPHKQPQSDVGGPQMVIPPPPPHKQP 92

Query: 73  QSDADGPQMVIPPSSLYVSPQSNVGSPEMVIPPPPSHVHLQLDVGGPQMVIPPPPSHVRP 132
           QSD  GPQMVIPP   +  PQS+VG P+MVIPPPP H   Q DVGGPQMVIPPPP H +P
Sbjct: 93  QSDVGGPQMVIPPPPPHKQPQSDVGGPQMVIPPPPPHKQPQSDVGGPQMVIPPPPPHKQP 152

BLAST of Lsi06G002890 vs. NCBI nr
Match: gi|778665109|ref|XP_011648489.1| (PREDICTED: carboxypeptidase Y-like [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 89/129 (68.99%), Postives = 97/129 (75.19%), Query Frame = 1

Query: 1   MSYCRVLLRVGLQFDVGGPQMIIPPPPPHVRLQSGVGGPHMVIPPPPPHVPLQFDVGGPQ 60
           MS+C VLL VG Q DVGGPQM+IPPPP H  L S VGGPHMVIPPPPPH  L  DVGGPQ
Sbjct: 1   MSHCCVLLHVGSQSDVGGPQMVIPPPPSHNHLDSDVGGPHMVIPPPPPHHHLNSDVGGPQ 60

Query: 61  MIIPPPPPHVRPQSDADGPQMVIPPSSLYVSPQSNVGSPEMVIPPPPSHVHLQLDVGGPQ 120
           M+IPPPP H  PQSD  GPQ+VIP  S +    S+VG P+MVIPPPP H   Q DVGGPQ
Sbjct: 61  MVIPPPPSHKLPQSDVGGPQLVIPTPSPHHHLDSDVGGPQMVIPPPPPHKLPQSDVGGPQ 120

Query: 121 MVIPPPPSH 130
           +VIPPPP H
Sbjct: 121 LVIPPPPPH 129

BLAST of Lsi06G002890 vs. NCBI nr
Match: gi|778708480|ref|XP_011656211.1| (PREDICTED: zyxin-like [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-30
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = 1

Query: 6   VLLRVGLQFDVGGPQMIIPPPPPHVRLQSGVGGPHMVIPPPPPHVPLQFDVGGPQMIIPP 65
           +LL V  QFDVGGPQM+IPPPPPH  L S +GGP MVIP PPPH  L  DVGGPQM+IPP
Sbjct: 31  LLLHVDPQFDVGGPQMVIPPPPPHRHLDSDIGGPQMVIPSPPPHHHLDSDVGGPQMVIPP 90

Query: 66  PPPHVRPQSDADGPQMVIPPSSLYVSPQSNVGSPEMVIPPPPSHVHLQLDVGGPQMVIPP 125
           PPPH    SD  G QM+IP    +    S++G  +M+IP PP H HL  D+GG QM+IP 
Sbjct: 91  PPPHHHLDSDIGGLQMIIPLPPPHHHLDSDIGGLQMIIPLPPPHHHLDSDIGGLQMIIPL 150

Query: 126 PPSH 130
           PP H
Sbjct: 151 PPPH 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778688596|ref|XP_011652788.1|3.6e-4072.50PREDICTED: formin-like protein 5 [Cucumis sativus][more]
gi|778665109|ref|XP_011648489.1|1.8e-3968.99PREDICTED: carboxypeptidase Y-like [Cucumis sativus][more]
gi|778708480|ref|XP_011656211.1|5.8e-3059.68PREDICTED: zyxin-like [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G002890.1Lsi06G002890.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G002890MELO3C029296.2Melon (DHL92) v3.6.1lsimedB418
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G002890Watermelon (97103) v2lsiwmbB359
Lsi06G002890Watermelon (97103) v2lsiwmbB365
Lsi06G002890Watermelon (97103) v2lsiwmbB384
Lsi06G002890Watermelon (97103) v2lsiwmbB386
Lsi06G002890Wax gourdlsiwgoB478
Lsi06G002890Wax gourdlsiwgoB496
Lsi06G002890Wax gourdlsiwgoB499
Lsi06G002890Wax gourdlsiwgoB517
Lsi06G002890Bottle gourd (USVL1VR-Ls)lsilsiB059
Lsi06G002890Bottle gourd (USVL1VR-Ls)lsilsiB114
Lsi06G002890Bottle gourd (USVL1VR-Ls)lsilsiB141
Lsi06G002890Bottle gourd (USVL1VR-Ls)lsilsiB166
Lsi06G002890Cucumber (Gy14) v1cgylsiB164
Lsi06G002890Cucumber (Gy14) v1cgylsiB247
Lsi06G002890Cucumber (Gy14) v1cgylsiB579
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB063
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB128
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB179
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB181
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB358
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB444
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB445
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB732
Lsi06G002890Cucurbita maxima (Rimu)cmalsiB843
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB050
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB118
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB169
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB171
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB347
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB433
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB724
Lsi06G002890Cucurbita moschata (Rifu)cmolsiB828
Lsi06G002890Cucurbita pepo (Zucchini)cpelsiB093
Lsi06G002890Cucurbita pepo (Zucchini)cpelsiB125
Lsi06G002890Cucurbita pepo (Zucchini)cpelsiB305
Lsi06G002890Cucurbita pepo (Zucchini)cpelsiB563
Lsi06G002890Wild cucumber (PI 183967)cpilsiB059
Lsi06G002890Wild cucumber (PI 183967)cpilsiB133
Lsi06G002890Wild cucumber (PI 183967)cpilsiB299
Lsi06G002890Wild cucumber (PI 183967)cpilsiB543
Lsi06G002890Cucumber (Chinese Long) v2culsiB058
Lsi06G002890Cucumber (Chinese Long) v2culsiB134
Lsi06G002890Cucumber (Chinese Long) v2culsiB299
Lsi06G002890Cucumber (Chinese Long) v2culsiB528
Lsi06G002890Melon (DHL92) v3.5.1lsimeB393
Lsi06G002890Melon (DHL92) v3.5.1lsimeB396
Lsi06G002890Melon (DHL92) v3.5.1lsimeB414
Lsi06G002890Melon (DHL92) v3.5.1lsimeB423
Lsi06G002890Watermelon (Charleston Gray)lsiwcgB355
Lsi06G002890Watermelon (Charleston Gray)lsiwcgB364
Lsi06G002890Watermelon (Charleston Gray)lsiwcgB381
Lsi06G002890Watermelon (97103) v1lsiwmB386
Lsi06G002890Watermelon (97103) v1lsiwmB396
Lsi06G002890Watermelon (97103) v1lsiwmB401
Lsi06G002890Watermelon (97103) v1lsiwmB411
Lsi06G002890Cucumber (Gy14) v2cgyblsiB055
Lsi06G002890Cucumber (Gy14) v2cgyblsiB123
Lsi06G002890Cucumber (Gy14) v2cgyblsiB276
Lsi06G002890Cucumber (Gy14) v2cgyblsiB501
Lsi06G002890Melon (DHL92) v3.6.1lsimedB415
Lsi06G002890Melon (DHL92) v3.6.1lsimedB433
Lsi06G002890Melon (DHL92) v3.6.1lsimedB437
Lsi06G002890Melon (DHL92) v3.6.1lsimedB445
Lsi06G002890Silver-seed gourdcarlsiB086
Lsi06G002890Silver-seed gourdcarlsiB180
Lsi06G002890Silver-seed gourdcarlsiB519
Lsi06G002890Silver-seed gourdcarlsiB547
Lsi06G002890Silver-seed gourdcarlsiB709
Lsi06G002890Silver-seed gourdcarlsiB806
Lsi06G002890Silver-seed gourdcarlsiB817
Lsi06G002890Silver-seed gourdcarlsiB938
Lsi06G002890Cucumber (Chinese Long) v3cuclsiB068
Lsi06G002890Cucumber (Chinese Long) v3cuclsiB145
Lsi06G002890Cucumber (Chinese Long) v3cuclsiB147
Lsi06G002890Cucumber (Chinese Long) v3cuclsiB319
Lsi06G002890Cucumber (Chinese Long) v3cuclsiB564