Lsi06G002540 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAATTTTGTTTTAAAAAAAGGAAAAACGAAAAAGGAGGAGGAATTCTCGAAACGGCCCCTGCTGCGTATAGCGTCCTTCTTCTCATATCATTTTTCCATTTTCTCTCGTTCACTAACTCCGCAGAGCTCGCGGCGGCACAGTACAAGCTAGCGTTAGAAGGAAGAAGCGGCCAGCAATTCACTCCGCCTTTTCTCGATTTCTTCTTCATTTCTTTGATTTTGCATTTCCCAATCAGACATTCAAAGGTAAAGTTCTGCTACTCCCCTTCTTCTTCTTTATTTATTTATTTTTTGTATTTTTAACCATTTTTCGTCAGATCTCAATTCCATGTTTGCTGATGTGCTCTTTCGGTTTCGTAATTGTTAGATCTTTTATTTAGTATGATGGATTTTTGGGTGTGTTTTGTATTTGTTGAATTTTGAATCGTGGCTTCGTAGTCTCGATTTTCAAGGTTCAGTAATTAGGGAACCATCGTGAGATGATTTTTTTTTCAAGATGACATTGAATACTAGGTTTTTGTTTCTATGTTGAAATTAGAAATGAGTAGCTTATTCTGCTTAATTTGAGGGGAATTCCTTTTTCTTTTATTGTGTGGCGATTTTGGATTGTTTGATGCCGTAACGGAGTAGAGATCATACGCTGGAATGTGGTGTCTGTTTTGAGAGGATTTGGTTCTGGTTCTATTTTTGGCGCCATCATAAAGTCGCAGTCAGTGCAGTAGTTTATAGCATATATTTCTGATTCTCCATGTCTTGTTGTACTTCCTAAAAGTTCTGACAGCTATTATTAACGCTTCCTTGAGTAATAGTTACCTCTTTGAACTGTTCTGTAACTTTGGTCTGCTCCACACAACATTTTTACCCTAATAAAATTGGGAAAGAATGAACCACCATGGGTTGGCCTGGTCATCAAAATAATCATTAGCTCATAGAGAATTGAGTTTAAGGCATGTGGCCACCTACATGGAATTTAGTATCCTACGAGTTTTCTTGACAACCAAATGTAGTAGGGTTAGGAGCTAGGAGGTGGTCTGGAATCTCACGGATATAAAGAAAGGTGGAAAAATGAGTCTAGGCAGCTTCTATTTGGTAATGTTAGTTTTTTTGCAAGTTCAGCAAGTAGGAGTGAGTTTTCGAGCCTCCTTCAATGTACCGGAGCCTTATGGTGAGCTCTATTCTCACAAAGTTCCAATTCATTGATGAGTAAAACAAAAACGTCTTTTATTGATTTTGATTGTTTCATCAATGCAGTTTAAACTTTCTAAACAAATTTTGTTGTCTTTGTTCTTAACAAACTCAGTGATACTACCTTCCAATTCCAACATCAACATACTCATCTCTATCGATGTTTGCTCTCAAAGTTTAGAACCAGGGCCAGAACCATATCAGTACTGTAGGAATTAAAAATTGACGTAAAAATTCAAGAGTGTAGATTAATTTTTTGGAAGGAAAATACAAAGGTCTATAGCCTTTCAAGGGGATTATCTATCTCTTACATATCCTTCACTCAATGTTCCTTTATGTGTCTCCCTCTGATCACCCTAACAGTGCTATTTGTATCCATATTTACACCAATAAACCCACTAGCTATGAGTCTATGACTTATATACTCAGTGGTAACAATCCCATCAAAGTACTTTATCATACAATAAGTTATTTTGCGTGTACTGAGAATATTGAGTGGAGCTTCATATCATTTGTTATTAAATCCTTAATGGGGAGTTTTTAGTTTCTGGACTGCCTGGCAAAAGCTACCTTGCCCTTTTGATTGTACTGTTTGTTATCCCAACTTGGGCTTGTCGATCTCTCCTCTTATTTGGGCATGTAGTTCCTCTTGTAGTATATGGCCTATACTTTTTATTGCTCCTATCCATTATTCCACCTAACGCGTCTCTTTTTCCTACAAACTATCAACTCTTGTTTGAGTAATGGTTAGCTTGGTCCCCAAGTCCTATTGCTATTGTCACTTTACCTTCAACCATAAAATTGATCTGTTCTCGCACCTCAGTTTTACTGGAAATTTAATAAAGAGTGAGAAAAGTCCAGCCTTTTCTGCATCTCTTATGTTTTGTAAGTTGAGAGAGAGACAAACAGAGAGTTCTCAAACCTTTGCTTACACAGTATTTAAGCTACTACTCGATGGCCTTTGATGTATATTCAAAATTAAATTAGCATTCCTTCCCAGAATATTTTGTCAGTGATTCAGTGCCATCTCTTGCTAGTCAACTGAGTTCCTACTTTGGTAGTCTTTTAGCTTCATCTGTAGTGTTTTAGTTACCTGATGTTGAAACTATGGTGTCAAAGCTACTTAATACTTCAGGCAGGAGACACTATCTACAATATTTATTTATAGAGACCAAAACCTGGGAAGGGCATGGTGGTCATATGGTCCTAGGTTTAAGACCAAAATGTTGTGATGCCAAATGTCAAATGATAGTCCAAGTTTCAAATAATGGATTTTGAGCGCTTGATGAGTTTTGTTGCGAAGTAAAAGATTTGTAAATATATAAAGTAATATCATGATTTAGTTAATGAGGATTTTCTATAAACATCATTTTCACGTTCTTGAGTCTTCTTTTTTTAAAGAAACGATTTAATTGATGTATGAAATTTACAAAAGGGATGATTGATCTATGATAGTTACAAAAAGCTTTCCCAATTTGAAGAAAGGGAGGCATAACTATCAGAAACCTTGACTTCCTCGATTGTTACAACATCTCATATTTTTGTATGCTGCATTTCAGGGCATAAGACTTTAAACTAATGGCATCCAAGTTGACTCAGTTACAATCCAAGGCCACTCAAGCATCACAATTTGTGTTAAAGAATGGGTGTTCTTACTACAAGCAATTATTGGAACAAAACAAGCAATTTATTCAGGAACCACCTACAGTGGAGAAATGCAACGAGCTTTCTAAGCAACTATTTTACACTCGTCTTGCAAGGTCATAGTTTCTACACTCTCTTTATATTGGCATACTGTTTGACTTTATCGCTTTGCATCTTTTTGGAATTAGGAAAGAGTACCCATTCTTCCCATAATAATGCAGGACCTAGTTTTCCTTGGTCTGTTGGTGAAATATCGTCTGTGCTTAGTCATTTGTGTTCTTTAGTTTCATTTTTTCTAAATGTTTTCCTAGTTGTTTTTTTTTTTTCAATCCTACGTTTTTCTTCTCCTTTCCAGCCTTTCATCAACGTAGTTTCTGTCTTGTTGAGTCCCTTTTTACACATTTAATTTAATTTACTTTTCACTAATATAAATGTTTGGTACTTATGGTGCTGCGACCTTTATGAGTTTATATCAACTATTGTAGAGAAGAAAAAAAGTCAATTGATCCCAACAATATTTAAGAAGTGATTTAGTGGTCAATGTGTGACGCAGTGCTGGCTCTAAACTACAAAATTCATGTCTTTTAAGATTTTTCAATTATATATAGCATCAGCATATTGCATAATAAGTTTTTTTTTTTCACATTGATGTCCATAGATTTACTTTATGTATGGGATAATATTTAGAGTTCTCACTGATATCCTAGCATTTTTAACAATTTTAGAAATATATAACAGTGCTTTTAGAAGAAACGCACAATAAGTATCATAACAACTTTACATTTATATTTACTATGAACTTCCTTTGAATATAATTTATAATACCATACATATTATACAAATTAATCATTAAATTGAACACAATATATAAGCTCAACTGGAAATCTTTTCACATATGAGATACTCTAATGCATTCTTCTCATATTACGAGCTACATAACTTTTTCCAGTGCATGATGGTAAAACCTACTTTATTGTTGCCATCCGAAACTATATTCTTCTGTAATCTTCTTATATCCAAAGAAATATGAGCAAACTCCGTGTGTGAAACGTGAGGCCAAAAGAATATCATTTTGACATCATCCTATCAATGCAGTCTTCCAGGTCGGTACGAATCGTTCCATAAGGAACTTGATTATGTAAAACAATTATGGAAGAACAGACAAGAGCTGAAGGTGGAAGATGCTGGTATTGCTGCTCTATTTGGTCTGGAGTGCTTTGCATGGTTTTGTGCTGGTGAAATTGTGGGAAGGGGTTTTACTTTCACCGGATACTATGTCTGAGGTTTTCACTTTGGGAAAACATGGCTTTAGTTTCATCCTTAAGCTTCGCTTTCCTGCGTCGTCGTCGTTTGTACCATTCGAATGACTTGAATTCTGCATGAAATTTTGTTGCTTTCCTGCAAAATTTTTTAGAAGCTTAGTATTTGGTGAGGAAATCAGTTTACTTATTAATAATCCATGTATCCAGAGTAACTTGGATGGATAATGATGCTGTTGCTTTCTTTAATCTCCTGCAGAGTTTCTATCTTGAATCATGATAACTTTCAATTGAGTTCATATCATATACACTCTTTTGTTTTCATTTTGTATGAATTCACTGTTGAATTTCAAGTTGATTTAAGGACTTAGTTAATGAATCATTCCCTCTTCATTTACTCTTGG TGAAATTTTGTTTTAAAAAAAGGAAAAACGAAAAAGGAGGAGGAATTCTCGAAACGGCCCCTGCTGCGTATAGCGTCCTTCTTCTCATATCATTTTTCCATTTTCTCTCGTTCACTAACTCCGCAGAGCTCGCGGCGGCACAGTACAAGCTAGCGTTAGAAGGAAGAAGCGGCCAGCAATTCACTCCGCCTTTTCTCGATTTCTTCTTCATTTCTTTGATTTTGCATTTCCCAATCAGACATTCAAAGGGCATAAGACTTTAAACTAATGGCATCCAAGTTGACTCAGTTACAATCCAAGGCCACTCAAGCATCACAATTTGTGTTAAAGAATGGGTGTTCTTACTACAAGCAATTATTGGAACAAAACAAGCAATTTATTCAGGAACCACCTACAGTGGAGAAATGCAACGAGCTTTCTAAGCAACTATTTTACACTCGTCTTGCAAGTCTTCCAGGTCGGTACGAATCGTTCCATAAGGAACTTGATTATGTAAAACAATTATGGAAGAACAGACAAGAGCTGAAGGTGGAAGATGCTGGTATTGCTGCTCTATTTGGTCTGGAGTGCTTTGCATGGTTTTGTGCTGGTGAAATTGTGGGAAGGGGTTTTACTTTCACCGGATACTATGTCTGAGGTTTTCACTTTGGGAAAACATGGCTTTAGTTTCATCCTTAAGCTTCGCTTTCCTGCGTCGTCGTCGTTTGTACCATTCGAATGACTTGAATTCTGCATGAAATTTTGTTGCTTTCCTGCAAAATTTTTTAGAAGCTTAGTATTTGGTGAGGAAATCAGTTTACTTATTAATAATCCATGTATCCAGAGTAACTTGGATGGATAATGATGCTGTTGCTTTCTTTAATCTCCTGCAGAGTTTCTATCTTGAATCATGATAACTTTCAATTGAGTTCATATCATATACACTCTTTTGTTTTCATTTTGTATGAATTCACTGTTGAATTTCAAGTTGATTTAAGGACTTAGTTAATGAATCATTCCCTCTTCATTTACTCTTGG ATGGCATCCAAGTTGACTCAGTTACAATCCAAGGCCACTCAAGCATCACAATTTGTGTTAAAGAATGGGTGTTCTTACTACAAGCAATTATTGGAACAAAACAAGCAATTTATTCAGGAACCACCTACAGTGGAGAAATGCAACGAGCTTTCTAAGCAACTATTTTACACTCGTCTTGCAAGTCTTCCAGGTCGGTACGAATCGTTCCATAAGGAACTTGATTATGTAAAACAATTATGGAAGAACAGACAAGAGCTGAAGGTGGAAGATGCTGGTATTGCTGCTCTATTTGGTCTGGAGTGCTTTGCATGGTTTTGTGCTGGTGAAATTGTGGGAAGGGGTTTTACTTTCACCGGATACTATGTCTGA MASKLTQLQSKATQASQFVLKNGCSYYKQLLEQNKQFIQEPPTVEKCNELSKQLFYTRLASLPGRYESFHKELDYVKQLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
BLAST of Lsi06G002540 vs. TrEMBL
Match: A0A0A0LYS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G580240 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.1e-61 Identity = 117/122 (95.90%), Postives = 120/122 (98.36%), Query Frame = 1
BLAST of Lsi06G002540 vs. TrEMBL
Match: A5AY31_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00810 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 2.3e-56 Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1
BLAST of Lsi06G002540 vs. TrEMBL
Match: E0CT31_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g04860 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 5.2e-56 Identity = 107/122 (87.70%), Postives = 117/122 (95.90%), Query Frame = 1
BLAST of Lsi06G002540 vs. TrEMBL
Match: A5AHC7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001728 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 8.8e-56 Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 1
BLAST of Lsi06G002540 vs. TrEMBL
Match: A0A0D2R409_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G081200 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 3.3e-55 Identity = 109/121 (90.08%), Postives = 114/121 (94.21%), Query Frame = 1
BLAST of Lsi06G002540 vs. TAIR10
Match: AT2G19680.1 (AT2G19680.1 Mitochondrial ATP synthase subunit G protein) HSP 1 Score: 205.7 bits (522), Expect = 1.6e-53 Identity = 101/121 (83.47%), Postives = 109/121 (90.08%), Query Frame = 1
BLAST of Lsi06G002540 vs. TAIR10
Match: AT4G29480.1 (AT4G29480.1 Mitochondrial ATP synthase subunit G protein) HSP 1 Score: 202.2 bits (513), Expect = 1.8e-52 Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 1
BLAST of Lsi06G002540 vs. TAIR10
Match: AT4G26210.1 (AT4G26210.1 Mitochondrial ATP synthase subunit G protein) HSP 1 Score: 197.6 bits (501), Expect = 4.5e-51 Identity = 95/121 (78.51%), Postives = 110/121 (90.91%), Query Frame = 1
BLAST of Lsi06G002540 vs. NCBI nr
Match: gi|449435822|ref|XP_004135693.1| (PREDICTED: uncharacterized protein LOC101205555 [Cucumis sativus]) HSP 1 Score: 242.3 bits (617), Expect = 4.5e-61 Identity = 117/122 (95.90%), Postives = 120/122 (98.36%), Query Frame = 1
BLAST of Lsi06G002540 vs. NCBI nr
Match: gi|659099884|ref|XP_008450823.1| (PREDICTED: uncharacterized protein LOC103492293 [Cucumis melo]) HSP 1 Score: 242.3 bits (617), Expect = 4.5e-61 Identity = 117/122 (95.90%), Postives = 120/122 (98.36%), Query Frame = 1
BLAST of Lsi06G002540 vs. NCBI nr
Match: gi|225429460|ref|XP_002277333.1| (PREDICTED: uncharacterized protein LOC100267911 [Vitis vinifera]) HSP 1 Score: 226.1 bits (575), Expect = 3.3e-56 Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1
BLAST of Lsi06G002540 vs. NCBI nr
Match: gi|302143185|emb|CBI20480.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 224.9 bits (572), Expect = 7.4e-56 Identity = 107/122 (87.70%), Postives = 117/122 (95.90%), Query Frame = 1
BLAST of Lsi06G002540 vs. NCBI nr
Match: gi|147770309|emb|CAN71304.1| (hypothetical protein VITISV_001728 [Vitis vinifera]) HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55 Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |