Lsi06G001440 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G001440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Defensin-like family protein, putative
Location	chr06 : 1429721 .. 1448946 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTGTTGGACTCATTGCATTTCTGGCTGCGAAAAAGGAGGATTCTGCAAACAAGTTGGGAGTGGCCATGTTTGCCATTGCTATTGTTGATTTCTTGTCATTATTTTCCTTTTCTGGCTTCGTTTTCATGTATGCAATGCATGCATTGCTCTTCAATAACGATGATTTTAATAATAAATAATCGTTAATATAATAAGAAACAAGGAGCCAATCCTATCTCTGCCTATATTAATATGAATTTTAAGGAGGTGAAAGAGTTGCACCAAAAAATCAATAGTGAGGTCTATGTCTGAACTCTTTTAAATTTTCATATTCTTCATTCGAGAGAGATTCAATAAACAAACCATTCTAAAATAATACTTAAGACCATTACAGGGTAGAATTCCCATAGATAGTGGTTTAAGAAATTATGAAAGTAGGACCTCCCTAGGCCACCTGCTTTGATACCATCTTAAATCGCCGATAAACTAAAAACTTAACCCTGATAGGTGAAGGCAAATTTAATCTTATCATCTAACAATATATATTGAAAATTAAAATACTATGTAAGTATACATGAAATAATGGTTCAAAAAAATTAGGAAAAATTTCACATATAGAAAAAATGTCAAACTATTTAAAGAAAATAACAAAAAAACACTGATAGATATTGATAGACTTCTATTAGCATCTATCACAACTATCTAAAATTTTTGCTATTTTGTGTAAATAGTTTCTCTTATTTTTCTATTTTTAAAAATTCTCCAAAAAATTGTATATGAAATAAAACTTTTTAAAAGGAAATTCATTCTTCTATGATTAAAACCTACGACTAAGAAATGCGAACAAAAGCCTTGTAGCTAGTTGGCCAACAAGAAAATCAATAAACTTCATATTCAAGCGAAGGAAAAGAAACGGAACAATAGAACTCATTTATTCCTACAAAATATAAAGTATATACTGCCCAAATAAGGACGTCCAATAAATATTTGAATGTTTTCACTCGATGATTATTATATTATAGGGTTTCCAAAGCGGCAATAATAATTTAGGGTCTTACAACCAAGAATAATGGAGCATCTATCTCACTCTCCACCCTCACATTTAGGGCAAAAAGAACCTTCACTTTATATACAATTGCCAAAGAATAAAGAAATATTATTAAAAAGTAAAGGTAAAACGTCGAGGTAAATCAGAAGCACGAATACGATAAACGATATGATACGACGATACATTAATTTTCAAAAAAAAAAAAAAAAAACTAGGACATGGTAAGGATACACTTTTTATTATTTTTTTTTGAAAGGATATATAAATTTAACATAAAATACTAAATGCACTCCACTAAAAACAAACATAAATGTCAAGTTAATTAATAATTATAGGAGATGAAACATTTAAGTTTCTAACTTTAGTTTTTTATGTTTATGTTTTTTTATCTTTGCTTAAAAAAATGGGCTTCTTTTTTTTTTTTTTAATCTTAGTTTAACATATAATTAATTTAGTCTTTAAATTTTGGTCCAGCATGAAAGGTTGGCCCATTTTCTCTTTTAAAAACAAACGCCTGATATATCCATGAAGTGTTCCAAACGTGTCTGAAATTAAAAATAAATAAATAGAACATGTAAATTTTTGTGTTAAATACGTGTCCGGAGCGTGTCTGACACGTGTTCGGGACACTTTGCCTAAAATAGAGTGATTGTGCTTCATATAGATGGTCATATTGCTACTAGTGATGTGTTTAGAACGTGCATGAAACATCAAACTAGCAGCGAGGGCACTTGCACCGAGATTTTCACACCCAAGGATAGGGTACCAACCAATGGAAAACCAAGTTCATATAAAATGTTTCGAACCCAAGTAACTTTCAGTAGTTGTGTGGACAAGAGGATCGATACTTGAATTTTCATACTTAAGTGACAACAACAACTACCTATTTCTAGAGGACTATGAAATCTGAGACATGCCAAGAAATTGTTTAATTAGTATGAAGTAGTAGACTTTTGATCATCAATGTTGTCTTCCCGATGACATCCAAGAAGGTCGTAAGATTTAACGAATCATACTTTATTGAATGAGAAGACCATAGGATTTTAATTAATATGATTACTCATACTTAAATTTCTATTTTTGCAATTTTTAGATTTGACAAATTCTCGAGATGCAATAGTCTACAATTGGTGCAATTGTTTGAAAATTAGAGAATCGTGTTAAGAATCCTTAAGTTAAATTTAAAACTTGAGAAAAAATTTTTTCCTAATAATTCAATAAAATATGTGGGTTGAAAGATTTAACATCCTATCTTTTACTCGAGAGTATACTTATGTTTATAAATTTTTTCGTTATTTTGAGATGCATGAATATGACCATTTATAACCTACCATAAAAATTAAATCGAAATTGAAATAGAAATGAAATCATAACCTATGAGATAAAATTGGTAAAATCTATTTCAAATTTTCAGGTATAAATTACTATGACGTGCATAAATATAACCATATATAACTTGCAATAAAAATGGCAATAAAAATGACAATCAAGATGAGAGTGAATGTATAACCTGTAAAAAATATTAACCATTGCATTAAATTTTGAAATGAAACTTAGGTCAAATTAATGCATGAAAACCTTTAAAGGAAATTGTTCTCATTTATTATAATATATGTACTTTATGCATGGAATGAATTTTCCCTATAAAAACAAATAATCTTCCTTAGCAATTTGCATTATACATTCCAACCAATTTATATAGCAAAGTCAAAAGAAATGGCTAAATTAGGAGCAATTTCTATTTGGATCTTGATAACCTTCCTCGTCCTATATTCAGGTCTAACTTCTTTTATAATTTTTAGTTTGTAAAAATTTTTAAATATTAGATTTAGATTACGAACAAATTTTTTTTCTTTAAATGCTATAAAAATAGTCCATGTTTGGGAGTTATTTTTGTAGCGATTCCATTAAAAACCATCATGTTTAGAAATAATGCAAGAGTATGTTCTTGATAAATCAAAAGAAGTGGTTTATGAGAAAAAGAACATGATGATTATGAAAATTACTTTCAATATAGTGTTCATTCACATTATTTTTAAAAGCTTTAAAAGCACTCCTATCTAACTAACCCAAACCCCATAAAAGTTTATTAAATTTCACAATTTACACACTCGCTTCAATTTATGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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ATTTGAAGGAATTTTAAATAGAGGAGGAAATAGATATTTTATCACTTTTATCGATGATTTTTCAAAATATACTCATGTTTATTTATTGAAAAATAAAAGTGACGCTTTTGAGAATTTTAAAATATTTCTCCTTGAAGTTGAAAATCAATTCAGTAGCAAAATTAAAAGAATTAGAAGTGATAGAGGTCGAGAATATGAATCATTTGAATTCAATTCATATGTTGAATCATTAGGAATAATTCATGAGACTACTCCCCCATATTCACCTGCTTCTAATGGAGTAGTTGAGAGGAAAAATAGAACCTTAATTGTTTTGACTAATGCAATGCTACTAGAATCAGGTGTATCTTTTAATCTTTGGGGTGAAGCAGTTGACTGAGTATTTTATATACCCATTATTTTCTTAAAATGTTTTTTAGGTAAAAGGAAGAACATTCCAGGCGCTTGACGATGATATCTATTGACAGTGTCATAAGACTTGTAACGTTTTGCTTCAGTATAGTTTCATTTCTTCAAGATTGTTTTGGATGTTTTAATGGGAATCATTGAGTATAACAGTTTTATATTGAAACATTTTATATTTCATTGGGGTGGTTGAGGGATCCAAACTAAATTTTGTTTTAGTATTTTTAAAATTATTTAAGTGAATTTTTTTTTTTTTAGAAAATCTTTATTTTGAATTAAAATGGTCAACTTGTTAATTTTGAAATGGCACGCAGGGTACTAATGACCTCATTTAGAAATTTCAAAAAGTCGGATCGTTACGATTATTAATTTTGCATATCAAAACTTATTTGTATTAGAGTATGTAAGACTTTTGATGATTTCTTTTTATTTCTTTTAGGGGTTGTTATATATTTTCATATTATATAACAAAAGTATATATAATCTCGACTCACATAAATACGTAATATTGATCAAAAGAGATTAGAGATTTCAAATCTACAAAACAAGAACGTTATCAAACGAGTTTAAAAGTATTATATACCAATGCTCTGGTGATTGATATTGTGAAGCCAAATCACCCACGCATGATTGAAGCATATCTGTGTTAATGACACCTGGATCTAAGGCAACAATTATCATTCCCTCTGGTAATTCTTTTGCTATGGATTTGCTTAGTCCTTCAATGGCCCACTTTGATGCACAATATGGTGTAATCTACATTATATAAACTCAACTTTAGTATTATTTTGATTCTAAATTGTTCATAATAAATGTGTTAAAGAATTCAAAAAAAATATGCACAAATAAAAAAATATGTGGTTATGTCAAAATGAGCATAGCTCAACTACATAGTGCTTGTAAAGCTGTACTATCAACTTCGAAGTGAGAGGTTTGATTCTGTCACACCCCACCCCGTTACCTAAACTACTCTACCAAACCTAGGACGTGGAATGACGACAATAGATTCCAATTTAACTATGAAATCTATTGTCAACTCTAAGAACCTTTAAATAAATTTAAGGTGGCTGGCATGTTTTTGAGGATATAGTAACACTTTTTTATTTGTGATGGATTGTAAATATGGTTGTGTATGTTATATATTGAAACCAAAAAAAAAAAAACTTCCGGAGGAAGCTTTTGAAAAAAAAAATGATTTCAGGGTCTAACAATAGATTTCATAGTTTAGTTGAACTCTATTGTCGTCACGCTACATCCTAGGTTTGGCACGGTGTGACAGATTCTCACATCGTATAAATTCTCAAACAAGAAAACATGTGATTATACTACGTGCATATATAAATTGTAGAAACTATTCCATAACTTTTATATGTTTAAATTTAAATAATAATAATGGCTCTTTTCAATTATAAGTTTTGAAAATGTACATTTTTTAGTTCTCGAATTTTTAAGAATAAGTGCATTTGGTCCCTGAATTTTCAAAATATTTCCTTTTAGTCCCGGAACTTTTAAGTATAGGTTTAAAATGACTTGAAGTAATTCATTTAGTTATCTTAAATAATTATAAGATACTTAAAATTATGAAAATATTTTTAAAGAAAAACTATGAGAACGGAGATAATTTTAAAAACTATTTTTTCTAATTTAAAATGCTATATAATTATGGATGTTTTCAAACATAGAAAAATGAGTAAACTATTTATAAATATAAAAAAATTCCACTATCTATCAGTGACAGACCGCGATAGACTTTTATCACTTGAGCGATAGACTTCTATTTCTATCGCTGAGTGATAGAACTCTATCGCGGTCTATCGCTAATAGATAATGAAATCTTTCAATATTTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTTTCATATAATTATTTGAAATAATAATAATAAATTATTTGAGGGACATTTTAAACATATTCTTAAAAATTCAGGGACAAAAAATATATATTTTGAAAACTTAAGAACCAAACACACTTATTCTTAAAAATTACTTGGAGACTAAAAAGGTAAATTTTGAAAACCTATGGACCAAACACACCTATTTTGCAAAACTCGATAACTTAAAAGGTAATTCCACCCCTTCAAAAAAAAAAAAAAAAGAAGAAGAAAAGAGATTGTGTCTTCAAAATTCGAATCGAAACCCAATTAAAACAACATTCAATACGTTTAGAAAAAAGAAAATTTTCACAGATAAAAAAAATATCAAACCATTTACAAAAAATAGTAAAAATAATACCGACAGACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATCACTGATAGAACCTGATAGACTTCAATCAGCGTCTATCACAACTATCTAAAAATTTTACTATCTTGTGTAAATAGTTTCTCTTATTTTTCTATTTTTAAAAATTCTCCTTAAAAAACTTGTTTCCATTTTTTTAATTAGAAATCGAGAAATTGTTATTTAATAAAGCCTTAAATATTAGTAGACGTACCAGTTTATATGGATTCTTTCCAACATCAGAAGACATATTGACGATAATTCCTTGGTTGTGAGGAATCATAAGAGGAATGAAGTGACGTAGAATGTTTGCTGTCCCTTTGATGTTAGTATCAATCACATTATCAAAATCTTCAACATCAATCTCCCACATATTACCTTGTTTATTAACCACACCTGCATTATTCACTGTGAACAACAACCAACCATACAAAACTTTACTTTGTTCAATGTTATTTTAAAATAAGGTTCTTAGGTTTTGGGTCTATAAAGTTTATCCTTTTCGGTCTCTAGCTAGGTTTTAAAACGTTACCTTTTTTTTTTGTTAGCTGTGAGTGTTTGAGATAGCTTACGCACACATCGACTAATTTTATGGAACAACTCGTCTGATCCTACAACATTTACATGTCAAGGATACCCGTAAGATTTAGGTCATACCGTCTATTTATCACTAGACCAACCCATGATGGTTCGAAATGTTATTCTTTTAGTTCTTAAGTTTTGAGTTTGATTTCAATTTAGCCACTAAATTTTAAAATGTTACAATTTTACCTTTGAAATTTAAGTTTTGTTTCAATTTGGTCCTTAGATTTTAAGATTTACACTTTTAACCTCGATCTTACACTAAATACTCACGTTAATCCCTATAAATTAATTTAAAATAATTAAGAAGTGAGAATTATATTCAAAATTAATTTTAATATAATGATGAAGAAATAGTGAAAATTAATTACTTATAATCTTTTAAATTAATTAATAGACATTAACATTTAAGAATGAAAGTGTAGTGGAAAATCAAGGTTAAAATATAAATCTTGAAAAACATAAGGACCAAATTTGAAACAAAAATTTAATCTCAAGGAAAAAATTGTAACATTTTAGAGATCCATGGACTAGATTGAAATCAAACTGAAAATTTAAAAACTAAAAGCGTAACATTTTGAAACTAAAAATACTTAGGTGCATCTCAGGCTAGCTAGTTACACCCATCTTTGTGCAACCCGTATCCAGGTGCCCAATCACAAGTTGGCTCGTTGTTTTCCTTTTCTTATTAAAGGAAGTGTGATTGGGCCTCGCTATGGTATAAACCTCGTGAATTAAGCAAACTACTAAACTGAAGATTCATTCTCTCTCTTGAACTATATAGTATGTTATATATTCTTTCTAGCAACTCAATCAAAATCAAAGCAAACTTATTGCAACTACATCAACAATCGGAGGAAATTTACTAGTGTCCTACCTACTAACGCTAATAAGGTTGAAAGAAGGATGCATCGAGCAAGCAATGCGACCTCCGATTCTACTTAA

mRNA sequence

ATGGAAAGGAGTTTGAATACAAGTGCTCAATTGTGTTGCAACAACCATCCTCAACTTGGTGCCTGCAAGCCTGGAGTAGATGATCAAGGAGATGGGAAGTGTTGGACTCATTGTATTTCTGGCTGCGAAAAAGGAGGATTCTGCAAACAAGTTGGGAGTGCAACTCAATCAAAATCAAAGCAAACTTATTGCAACTACATCAACAATCGGAGGAAATTTACTAGTGTCCTACCTACTAACGCTAATAAGGTTGAAAGAAGGATGCATCGAGCAAGCAATGCGACCTCCGATTCTACTTAA

Coding sequence (CDS)

ATGGAAAGGAGTTTGAATACAAGTGCTCAATTGTGTTGCAACAACCATCCTCAACTTGGTGCCTGCAAGCCTGGAGTAGATGATCAAGGAGATGGGAAGTGTTGGACTCATTGTATTTCTGGCTGCGAAAAAGGAGGATTCTGCAAACAAGTTGGGAGTGCAACTCAATCAAAATCAAAGCAAACTTATTGCAACTACATCAACAATCGGAGGAAATTTACTAGTGTCCTACCTACTAACGCTAATAAGGTTGAAAGAAGGATGCATCGAGCAAGCAATGCGACCTCCGATTCTACTTAA

Protein sequence

MERSLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSATQSKSKQTYCNYINNRRKFTSVLPTNANKVERRMHRASNATSDST

Homology

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BLAST of Lsi06G001440 vs. Swiss-Prot
Match: DEF20_ARATH (Putative defensin-like protein 20 OS=Arabidopsis thaliana GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-10
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 1


Query: 11 LCCNNHPQLGACKPGVDDQG--DGKCWTHCISGCEKGGFCK 50
          +CC  HP +G C PG+DD    DGKCW  CI GCE GGFCK
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCK 76

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BLAST of Lsi06G001440 vs. Swiss-Prot
Match: DEF21_ARATH (Defensin-like protein 21 OS=Arabidopsis thaliana GN=At4g14276 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1


Query: 11 LCCNNHPQLGACKPGVDDQGD--GKCWTHCISGCEKGGFCKQVG 53
          +CC  HP +G C P +DD  +  GKCW  CI GCE GGFCK  G
Sbjct: 40 ICCKEHPSVGRCLPNIDDSAEKGGKCWKFCIEGCETGGFCKLFG 83

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BLAST of Lsi06G001440 vs. TrEMBL
Match: A0A0A0M1N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573060 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.5e-17
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQV 52
          S+NT+AQLCCNNHP+LG C+ GVDD  DGKCW HCI+GCEKGGFCK +
Sbjct: 22 SMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHL 69

[Close]

BLAST of Lsi06G001440 vs. TrEMBL
Match: A0A0A0LYL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573040 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-16
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVG 53
          SLNT+AQLCC NHP+ GACKPGVDD  DG+CW  CI GCEKGG CK+VG
Sbjct: 22 SLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVG 70

[Close]

BLAST of Lsi06G001440 vs. TrEMBL
Match: A0A0A0LWJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573030 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQV 52
          S+NT+AQLCCNNH +LG+C PGVDD  DGKCW HCI GCE+GGFCK++
Sbjct: 22 SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKL 69

[Close]

BLAST of Lsi06G001440 vs. TrEMBL
Match: A0A0A0LZ58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573070 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-13
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVG 53
          +LN +A +CCNN+P LG+CKPGVDD  Q +GKCW  C SGC KGGFCK+VG
Sbjct: 21 NLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVG 71

[Close]

BLAST of Lsi06G001440 vs. TrEMBL
Match: A0A0A0LW61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573050 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-13
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVG 53
          +LN +A +CCNN+P LG+CKPGVDD  Q +GKCW  C SGC KGGFCK+VG
Sbjct: 6  NLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVG 56

[Close]

BLAST of Lsi06G001440 vs. TAIR10
Match: AT5G52605.1 (AT5G52605.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-11
Identity = 25/41 (60.98%), Postives = 28/41 (68.29%), Query Frame = 1


Query: 11 LCCNNHPQLGACKPGVDDQG--DGKCWTHCISGCEKGGFCK 50
          +CC  HP +G C PG+DD    DGKCW  CI GCE GGFCK
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCK 76

[Close]

BLAST of Lsi06G001440 vs. TAIR10
Match: AT4G14276.1 (AT4G14276.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-11
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1


Query: 11 LCCNNHPQLGACKPGVDDQGD--GKCWTHCISGCEKGGFCKQVG 53
          +CC  HP +G C P +DD  +  GKCW  CI GCE GGFCK  G
Sbjct: 40 ICCKEHPSVGRCLPNIDDSAEKGGKCWKFCIEGCETGGFCKLFG 83

[Close]

BLAST of Lsi06G001440 vs. NCBI nr
Match: gi|700211040|gb|KGN66136.1| (hypothetical protein Csa_1G573060 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQV 52
          S+NT+AQLCCNNHP+LG C+ GVDD  DGKCW HCI+GCEKGGFCK +
Sbjct: 22 SMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHL 69

[Close]

BLAST of Lsi06G001440 vs. NCBI nr
Match: gi|659100545|ref|XP_008451146.1| (PREDICTED: defensin-like protein 22 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 1  MERSLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGF 48
          M  S+NT+AQLCCNNHP+LG+CKPGVDD  DGKCW HCI+GCEKGGF
Sbjct: 1  MAGSMNTNAQLCCNNHPELGSCKPGVDDDYDGKCWLHCIAGCEKGGF 47

[Close]

BLAST of Lsi06G001440 vs. NCBI nr
Match: gi|700211038|gb|KGN66134.1| (hypothetical protein Csa_1G573040 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-15
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVG 53
          SLNT+AQLCC NHP+ GACKPGVDD  DG+CW  CI GCEKGG CK+VG
Sbjct: 22 SLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVG 70

[Close]

BLAST of Lsi06G001440 vs. NCBI nr
Match: gi|700211037|gb|KGN66133.1| (hypothetical protein Csa_1G573030 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQV 52
          S+NT+AQLCCNNH +LG+C PGVDD  DGKCW HCI GCE+GGFCK++
Sbjct: 22 SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKL 69

[Close]

BLAST of Lsi06G001440 vs. NCBI nr
Match: gi|700211039|gb|KGN66135.1| (hypothetical protein Csa_1G573050 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 6.3e-13
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 4  SLNTSAQLCCNNHPQLGACKPGVDD--QGDGKCWTHCISGCEKGGFCKQVG 53
          +LN +A +CCNN+P LG+CKPGVDD  Q +GKCW  C SGC KGGFCK+VG
Sbjct: 6  NLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVG 56

The following BLAST results are available for this feature:

BLAST of Lsi06G001440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEF20_ARATH	2.2e-10	60.98	Putative defensin-like protein 20 OS=Arabidopsis thaliana GN=At5g52605 PE=3 SV=1	[more]
DEF21_ARATH	1.1e-09	54.55	Defensin-like protein 21 OS=Arabidopsis thaliana GN=At4g14276 PE=2 SV=1	[more]

BLAST of Lsi06G001440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1N0_CUCSA	8.5e-17	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573060 PE=4 SV=1	[more]
A0A0A0LYL5_CUCSA	7.2e-16	75.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573040 PE=4 SV=1	[more]
A0A0A0LWJ9_CUCSA	1.2e-15	72.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573030 PE=4 SV=1	[more]
A0A0A0LZ58_CUCSA	4.4e-13	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573070 PE=4 SV=1	[more]
A0A0A0LW61_CUCSA	4.4e-13	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573050 PE=4 SV=1	[more]

BLAST of Lsi06G001440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52605.1	1.3e-11	60.98	Defensin-like (DEFL) family protein	[more]
AT4G14276.1	6.3e-11	54.55	Defensin-like (DEFL) family protein	[more]

BLAST of Lsi06G001440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211040\|gb\|KGN66136.1\|	1.2e-16	75.00	hypothetical protein Csa_1G573060 [Cucumis sativus]	[more]
gi\|659100545\|ref\|XP_008451146.1\|	1.6e-16	78.72	PREDICTED: defensin-like protein 22 [Cucumis melo]	[more]
gi\|700211038\|gb\|KGN66134.1\|	1.0e-15	75.51	hypothetical protein Csa_1G573040 [Cucumis sativus]	[more]
gi\|700211037\|gb\|KGN66133.1\|	1.8e-15	72.92	hypothetical protein Csa_1G573030 [Cucumis sativus]	[more]
gi\|700211039\|gb\|KGN66135.1\|	6.3e-13	66.67	hypothetical protein Csa_1G573050 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0050832	defense response to fungus

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR022618	Defensin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G001440.1	Lsi06G001440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022618	Defensin-like protein	PFAM	PF10868	Defensin_like	coord: 11..55 score: 5.5
None	No IPR available	PANTHER	PTHR34453	FAMILY NOT NAMED	coord: 11..49 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G001440	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G001440	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G001440	Silver-seed gourd	carlsiB501
Lsi06G001440	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G001440	Watermelon (97103) v2	lsiwmbB365
Lsi06G001440	Wax gourd	lsiwgoB530
Lsi06G001440	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G001440	Cucurbita maxima (Rimu)	cmalsiB146
Lsi06G001440	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G001440	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G001440	Cucurbita moschata (Rifu)	cmolsiB065
Lsi06G001440	Cucurbita moschata (Rifu)	cmolsiB130
Lsi06G001440	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G001440	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G001440	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G001440	Cucurbita pepo (Zucchini)	cpelsiB564
Lsi06G001440	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G001440	Cucumber (Chinese Long) v2	culsiB058
Lsi06G001440	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G001440	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G001440	Watermelon (97103) v1	lsiwmB396