Lsi06G001250 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G001250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nuclear transcription factor Y subunit B-4
Location	chr06 : 1215709 .. 1216077 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACTCAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA

mRNA sequence

ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACTCAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA

Coding sequence (CDS)

ATGGGAGACCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGGGAGAATAATGAAGAAGATACTTCCCCAAAAGGCCAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAATGAAGCAGCACAAAGATGTCACCAAGAGAATCGAAGAACTCTCAATGGAGATGATATTTGTTGGGCTTTTGGTTCTTATGGCTTAGATAACTTTGCTGAAATTTCTTCCAAGTACTTGCTTAAGTTTAGGGAAGTTGAGAGAATCAAGGCTCATCAATATGAATGCAAAATTACTCAACAACTTCAAGAAGAAGAAGATGAAGATGATGAATGA

Protein sequence

MGDHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE

Homology

[Close]

BLAST of Lsi06G001250 vs. Swiss-Prot
Match: NFYB4_ARATH (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 7   DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTL 66
           DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA EFISFVT EA+++CH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 67  NGDDICWAFGSYGLDNFAEISSKYLLKFREVER 100
           NGDDI WA  + GLDN+A+   ++L K+RE ER
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of Lsi06G001250 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-27
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANVGRIMK ILP  AK+SKEAK+TMQEC +EFISFVT EA+ +CH+E R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY 106
           CWA  + G D++A    KYL ++R +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of Lsi06G001250 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-24
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+TMQEC +EFISFVT EA+ +C +E R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL +FRE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Lsi06G001250 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-24
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 1


Query: 3   DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQEN 62
           ++N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC +EFISFVT EA+ +C +E 
Sbjct: 32  NNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREK 91

Query: 63  RRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH----QYECKITQQLQEE 117
           R+T+NGDDI WA  + G +++      YL K+R+ E  K +    Q + +  QQ+Q++
Sbjct: 92  RKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQ 149

[Close]

BLAST of Lsi06G001250 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-24
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+T+QEC +EFISF+T EA+ +C +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL K+REVE
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVE 112

[Close]

BLAST of Lsi06G001250 vs. TrEMBL
Match: A0A0A0LW12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569510 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 1


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           HNGDEFLELPIANV RIMKKI+PQK KISKEAKK MQECANEFISFVT+EAAQRC  ENR
Sbjct: 5   HNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQ 105
           RTLNGDDI WAFGS GLDN+AE SSK+LL FREVERIK  +
Sbjct: 65  RTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDE 105

[Close]

BLAST of Lsi06G001250 vs. TrEMBL
Match: A0A0A0LZ17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569530 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 84/113 (74.34%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 8   EFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLN 67
           E L+LPIANV RIMKKI+P+K KISKEAKK MQECANEFI+FVT+EAAQRC  ENRRTLN
Sbjct: 6   ESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLN 65

Query: 68  GDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDED 121
           GDDI WAF S GLDN+AE SSKYLLKFRE ERIKA   +  IT Q Q   +ED
Sbjct: 66  GDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASD-KAIITFQDQHAGEED 117

[Close]

BLAST of Lsi06G001250 vs. TrEMBL
Match: K4B0W9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-32
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 1


Query: 7   DEFLEL-PIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRT 66
           DE ++L PIANVGRIMK+ILP  AKISKEAK+TMQECA+EFISFVT EA+ +CH+ENRRT
Sbjct: 3   DEHVKLVPIANVGRIMKQILPPTAKISKEAKETMQECASEFISFVTGEASDKCHKENRRT 62

Query: 67  LNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDD 122
           +NGDDICWA  S G DN+AE+  +YL K R+ ER++A+Q +  +      ++D+DD
Sbjct: 63  VNGDDICWALSSLGFDNYAEVMLRYLYKLRDFERVRANQNKLGLNDDDNTDDDDDD 118

[Close]

BLAST of Lsi06G001250 vs. TrEMBL
Match: A0A162B6P2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003339 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.8e-31
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANVGRIMK+ILP  AKISKEAK+T+QECA+EFISFVT EA+ +CH+ENR+T+NGDDI
Sbjct: 9   LPIANVGRIMKQILPANAKISKEAKETIQECASEFISFVTVEASDKCHKENRKTVNGDDI 68

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVERIKAHQ 105
           CWA GS GLD+ AE + +YL KFRE ER +A+Q
Sbjct: 69  CWALGSLGLDHHAEATGRYLYKFREFERERANQ 101

[Close]

BLAST of Lsi06G001250 vs. TrEMBL
Match: A0A061F331_THECC (Nuclear transcription factor Y subunit B-4 OS=Theobroma cacao GN=TCM_026629 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-30
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANVGRIMK+ILP  AK+SKEAK+TMQECA EF+SFVT EA+ +CH+ENR+T+NGDDI
Sbjct: 9   LPIANVGRIMKQILPPSAKLSKEAKQTMQECATEFVSFVTGEASDKCHKENRKTVNGDDI 68

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDED 121
           CWA    G DN+AE   +YL K+RE ER KA Q +   +Q   EE  ED
Sbjct: 69  CWALSVLGFDNYAEAIVRYLHKYREAEREKASQNKATSSQDKDEESSED 117

[Close]

BLAST of Lsi06G001250 vs. TAIR10
Match: AT1G09030.1 (AT1G09030.1 nuclear factor Y, subunit B4)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-30
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 7   DEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTL 66
           DE   LPIANVGR+MK+ILP  AKISKEAK+T+QECA EFISFVT EA+++CH+ENR+T+
Sbjct: 3   DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62

Query: 67  NGDDICWAFGSYGLDNFAEISSKYLLKFREVER 100
           NGDDI WA  + GLDN+A+   ++L K+RE ER
Sbjct: 63  NGDDIWWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of Lsi06G001250 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-28
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANVGRIMK ILP  AK+SKEAK+TMQEC +EFISFVT EA+ +CH+E R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVERIKAHQY 106
           CWA  + G D++A    KYL ++R +E  K + +
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHH 149

[Close]

BLAST of Lsi06G001250 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-25
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+TMQEC +EFISFVT EA+ +C +E R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL +FRE+E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Lsi06G001250 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-25
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 1


Query: 3   DHNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQEN 62
           ++N ++   LPIANVGRIMKK+LP   KISK+AK+T+QEC +EFISFVT EA+ +C +E 
Sbjct: 32  NNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREK 91

Query: 63  RRTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAH----QYECKITQQLQEE 117
           R+T+NGDDI WA  + G +++      YL K+R+ E  K +    Q + +  QQ+Q++
Sbjct: 92  RKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQ 149

[Close]

BLAST of Lsi06G001250 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 12  LPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLNGDDI 71
           LPIANV RIMKK LP  AKISK+AK+T+QEC +EFISF+T EA+ +C +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 72  CWAFGSYGLDNFAEISSKYLLKFREVE 99
            WA  + G +++ E    YL K+REVE
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVE 112

[Close]

BLAST of Lsi06G001250 vs. NCBI nr
Match: gi|659100537|ref|XP_008451142.1| (PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 7.0e-46
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 1


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           +NGDEFLELPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQRCH ENR
Sbjct: 5   NNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDDE 123
           RTLNGDDICWAF S GLDN+AE+ +KYL K+REVERIK  +Y+CKITQ+L  ++D+D E
Sbjct: 65  RTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKE 123

[Close]

BLAST of Lsi06G001250 vs. NCBI nr
Match: gi|449435996|ref|XP_004135780.1| (PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 1


Query: 4   HNGDEFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENR 63
           HNGDEFLELPIANV RIMKKI+PQK KISKEAKK MQECANEFISFVT+EAAQRC  ENR
Sbjct: 5   HNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENR 64

Query: 64  RTLNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQ 105
           RTLNGDDI WAFGS GLDN+AE SSK+LL FREVERIK  +
Sbjct: 65  RTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDE 105

[Close]

BLAST of Lsi06G001250 vs. NCBI nr
Match: gi|659100539|ref|XP_008451143.1| (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 83/113 (73.45%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 8   EFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLN 67
           E L+LPIANV RIMKKI+PQK KISKEAKKTMQECANEFISFVT+EAAQ+CH ENRRTLN
Sbjct: 6   ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 65

Query: 68  GDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDED 121
           GDDI WAFGS GLDN+AE SS  LLKFRE ERIKA              ED D
Sbjct: 66  GDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHD 118

[Close]

BLAST of Lsi06G001250 vs. NCBI nr
Match: gi|449435998|ref|XP_004135781.1| (PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 84/113 (74.34%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 8   EFLELPIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRTLN 67
           E L+LPIANV RIMKKI+P+K KISKEAKK MQECANEFI+FVT+EAAQRC  ENRRTLN
Sbjct: 6   ESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLN 65

Query: 68  GDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDED 121
           GDDI WAF S GLDN+AE SSKYLLKFRE ERIKA   +  IT Q Q   +ED
Sbjct: 66  GDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASD-KAIITFQDQHAGEED 117

[Close]

BLAST of Lsi06G001250 vs. NCBI nr
Match: gi|460370884|ref|XP_004231278.1| (PREDICTED: nuclear transcription factor Y subunit B-4-like [Solanum lycopersicum])

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-32
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 1


Query: 7   DEFLEL-PIANVGRIMKKILPQKAKISKEAKKTMQECANEFISFVTNEAAQRCHQENRRT 66
           DE ++L PIANVGRIMK+ILP  AKISKEAK+TMQECA+EFISFVT EA+ +CH+ENRRT
Sbjct: 3   DEHVKLVPIANVGRIMKQILPPTAKISKEAKETMQECASEFISFVTGEASDKCHKENRRT 62

Query: 67  LNGDDICWAFGSYGLDNFAEISSKYLLKFREVERIKAHQYECKITQQLQEEEDEDD 122
           +NGDDICWA  S G DN+AE+  +YL K R+ ER++A+Q +  +      ++D+DD
Sbjct: 63  VNGDDICWALSSLGFDNYAEVMLRYLYKLRDFERVRANQNKLGLNDDDNTDDDDDD 118

The following BLAST results are available for this feature:

BLAST of Lsi06G001250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB4_ARATH	2.7e-29	65.59	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1...	[more]
NFYB5_ARATH	2.5e-27	60.64	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2...	[more]
NFYB2_ARATH	2.6e-24	59.77	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB7_ARATH	7.5e-24	47.46	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB3_ARATH	7.5e-24	58.62	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]

BLAST of Lsi06G001250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW12_CUCSA	1.8e-40	84.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569510 PE=4 SV=1	[more]
A0A0A0LZ17_CUCSA	8.6e-35	74.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569530 PE=4 SV=1	[more]
K4B0W9_SOLLC	6.8e-32	61.21	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A162B6P2_DAUCA	9.8e-31	72.04	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003339 PE=4 SV=1	[more]
A0A061F331_THECC	2.2e-30	63.30	Nuclear transcription factor Y subunit B-4 OS=Theobroma cacao GN=TCM_026629 PE=4...	[more]

BLAST of Lsi06G001250 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09030.1	1.5e-30	65.59	nuclear factor Y, subunit B4	[more]
AT2G47810.1	1.4e-28	60.64	nuclear factor Y, subunit B5	[more]
AT5G47640.1	1.4e-25	59.77	nuclear factor Y, subunit B2	[more]
AT2G13570.1	4.2e-25	47.46	nuclear factor Y, subunit B7	[more]
AT4G14540.1	4.2e-25	58.62	nuclear factor Y, subunit B3	[more]

BLAST of Lsi06G001250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100537\|ref\|XP_008451142.1\|	7.0e-46	78.99	PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo]	[more]
gi\|449435996\|ref\|XP_004135780.1\|	2.6e-40	84.16	PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus]	[more]
gi\|659100539\|ref\|XP_008451143.1\|	1.5e-35	73.45	PREDICTED: beta-galactosidase 15-like [Cucumis melo]	[more]
gi\|449435998\|ref\|XP_004135781.1\|	1.2e-34	74.34	PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus]	[more]
gi\|460370884\|ref\|XP_004231278.1\|	9.8e-32	61.21	PREDICTED: nuclear transcription factor Y subunit B-4-like [Solanum lycopersicum...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0042256	mature ribosome assembly
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0043023	ribosomal large subunit binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G001250.1	Lsi06G001250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..74 score: 2.2
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 7..121 score: 4.5
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 11..108 score: 4.97
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 77..95 score: 1.3E-11coord: 39..57 score: 1.3E-11coord: 58..76 score: 1.3
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 12..122 score: 4.3
None	No IPR available	PANTHER	PTHR11064:SF44	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 12..122 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G001250	Csa1G569510	Cucumber (Chinese Long) v2	culsiB058
Lsi06G001250	CSPI01G26570	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G001250	Cucsa.182020	Cucumber (Gy14) v1	cgylsiB304
Lsi06G001250	CmaCh10G010880	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G001250	CmoCh10G011650	Cucurbita moschata (Rifu)	cmolsiB065
Lsi06G001250	Cla005230	Watermelon (97103) v1	lsiwmB396
Lsi06G001250	MELO3C015318	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G001250	ClCG03G017000	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G001250	MELO3C015319.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G001250	Cla97C03G067370	Watermelon (97103) v2	lsiwmbB365
Lsi06G001250	Bhi02G001744	Wax gourd	lsiwgoB507
Lsi06G001250	Cp4.1LG11g09310	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G001250	CsGy1G025840	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G001250	CsaV3_1G038920	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G001250	Cucurbita maxima (Rimu)	cmalsiB146
Lsi06G001250	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G001250	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G001250	Cucurbita moschata (Rifu)	cmolsiB130
Lsi06G001250	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G001250	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G001250	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G001250	Cucurbita pepo (Zucchini)	cpelsiB564
Lsi06G001250	Silver-seed gourd	carlsiB221
Lsi06G001250	Wax gourd	lsiwgoB528