Lsi06G001010 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G001010
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRALF
Locationchr06 : 1006295 .. 1011284 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGTTGGTTTCAACTTTCAATTTTGGACCTCATGATTTTGAGCTTTAGAAACTTTTGAGAATATAGAATCTATTTTCATATATTTAAATCCTAAAAAAAAATTAATTTATAAGAAAATTTTTACGCATAGAAAAAATATCGAACTATTTACAGAAAATAACAAAAAAAAATATCGATAGACATTGATAGACTTCTATTAGCATCTATTAGTGATAGACTTCTATTAGCATCTATTAGTGATAGACTTCTATCATTTCTATCACCGATAGACCCGGATAGACTTCTATCAGTGTCTATCACAACTATCTAAACATTTTGTTATTTTGTGTAAATAGTTTTCTTTATTTTTCTATTTTTAAAAAGTTTCCTAATTTATACCCTTAAACTTGAAGAGTTGTATTAATTTAAACTCTGAATTAATAATCGTATCAATTTAAACTTTGAATTTAAGTAAGTGTACCAATTTACACCATTTATTACGTTTCGTTAGTGTGGGATTCATAATTGTATTAGTTAAACCACTAAGGTTTCATAAATGAATCAATTTAGACTTTTATTCATAATTTTCTTTGAGAATCATCCATGCATTTATTCTAATCGTCAATTTTGTAAGACTGACATTTGAAGAAGTTTACACACGTTTGAGAATTAATACATAAATGATTTTCAAAAGTAATCATATTGACTTATCTAAATTGATTGGCTTGTAAAAATTTAGATTAACTCAAATTATAATTTTTACGTGACATTGGTCAAACGAAATCTAAAAGAGGTTGTAAATTGAAACACTTACGAAAATTTACGGTTTAAATTGATACAATCATTAGTTTAGTATTTTAATTGATACAAATCCCAAAGTTTAAGAGTATAAATTGACATTTATCTTAAATTCTATATTGATTCTTGTATTTATTTTATTTTATTTTATTCTAGTTCTAATTATATAAAAAAAAAAATTATATAGGGAAAAATCAAACTCTCGACTTTTGGTTAAAAAAAATATAAGTCTTAACTAATGAACAATGACCATGCTCATTTAATTCATAAATTTTGTTATTTTAAGACATGCTCGATCTTTTTCTCTTCTATTACACTTCTCTAGTGTGATTTTAATTTAACATTTTCTCAAAATTTAGTCTAATTAAAATTTTAAATATTAACTTTCAACTTCTGATGTCTCTTTTCAAAAAAAAATTTATAACATTTTTATATAAATTTTCTTTTGTTTTATCTATATTTCTATCGTGTGTATCTAAATTACTTTTCACTTGTTAAAATTTCTCTAAGTTATCTCTTATAGGAACTTTTATTTTTAGGCTTTTCTAATTCTTTCTCTAACATATATTATGCTCTTTACTTTTGTTGATCCGCAAATGAGGCAAGAAGAAATCACTTAATTTTAAACGTGTAAATTAGTAAACTTGGAGATGAGGTGACCAACAAAACAAATAGAAACTTCATGTCGGTATGGTGCTTGCTATATAGACTTTGAAAAAAGAAAGATAATGCAACAAGTTTAGGGTTTCAGAATGAGGATTCAACATAGAACTTAGGACTTATATGCCTTTTAGTCATAATGTTGTATTTATATGAAGGTTGACGTAAGGTTTCTGATTTTCCTCTCAGATTAGACTAGAAAAAAATTGAATCAAGTATATATTGAGGTCTCATAAGTTGGGGGTGTACAAGAGAAGATTGGGTGGCCTCAACCTCGAGCTCTCCTACCTTTGTTGAGGAGGCATTTTGGGCTTTTACGACCCCCTTGGTCTTCTTCCCCCATGGCTAAACTAGGCCTTCGGTTTAGTTTGTCACTAGACTCGAGTGTTTATTCACCTGGGCTGGATTAGCCTTGGCCTCACTTCGTTCTAGTTCTATTTCCTAATAATTCTCAAATCCTTCCCTAGTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTGGGTTACTTAGATCCTAACAAATTGTTACCACTCATAAGTTGGAATTCATGGCTTAGTTTTTTAATCGTTATGAGCTAGGCTTTGTATCCTAATTTGGTAGTATAATATTTTTGTCAAAGTTGTCTTCGTGTGTATTGTTTGTGTTCTACTTTAGTAGGGTGATTTTGGACAATTGAATCTGAGCTCCTCACTAGGTCAAGCTCAAAATTTTAGGCTTGCCCAATAACCAACTTGGCCTATCATTTTAGCTTTATGGTTTCAACCAAACTAGTTATTTTGATGATAAAAAATAAAATATTTTGTACTAATAGATTTAGTATTTCAAAGCTTATATCTTGTAGAGCTCAAATAGGAAATTCTAAGACATCTTGAATCGTTTGAATCGACTGAGAAACATATGGGCAAAAGAAGATTGGAGGCAAAATCTTATCTCATGTTGACACATGGCACCATGTTGACATGGTACTCGATAATTTTTTATTGACATGCCCGATTATGTGGTAGATGACATGGATGAACAAAAAGATTGCACATGGCAACTTTGTTTGACTAAAATAAAAGTGTTTATCAAAGGCTAATGTGCAGAAGGAGCTGATGGAAGCACATGATACCATATCATGTTATCTTTAGGGCTTCAATCAAACCATATATTTTGATGATAACAATTTAATTTTTTGTATCGATAGTTTTAGTGTTTCAAAGTTTCTATTTGTAGAGCTTGAATAGGCAATTCTAAGGCATCTCGAATCGTTTAAATTGAAGTTCAAACGAGAAAGATATGACAAAAGATTGGAGGCAATATCCTATGTGGTGTTGACACGTGGCATTGTGCAAACGTGGTACTCAATGAACTTTTTATTGACATGCCAGATGAACCAACAAAAGGATGACATGTGGCAACTTGTTTGATTTAATAAGGAAAGGTATTTTTTCATCTTCTTCCTCCAAAAATTATTGAGACAACGACCCTCAACATATCTCCGCAATGGTTAAAAAATGATTTCTTAGCCTTTTATTTAGAGTTATTGAATGATATTTTGTTACATTTGATAGTGTTTGCTAGTGTTTTTCAGATATTGAGCTTGAGAACAAGATTTAGAGCTAAAAAGAGCCAAAACAGCACAGTATGCAACAAAACAAACGACAACAAGAAAAATACTTTCTTGAACAACAGTAACAAGTTTGAACAAAACCAGACAAAAGATCAGAGTGAGAACTAACTAAACAAAACAGCGAAAACACCTGCATAAGTCTCCCCCTTAGGTTGCCAATAAGAAACCGTTGAAAAAGTAGAGCACAATCACAAATCAGAGACAAGATATTTGGGTTTTGAGAAAATAGGATGCTAGAGATCAATCTTGGAAAACAAATTGGAAGCTTAACAACATATGAGTCGATATGGCGAAGAATTTGATTTGTAGAAAGAACTCCAAAGTTAAAGGAGCCTGATTCCCAATTTGATATTACGTAATAGATAGGGTTAGAGACATGGGACAGTAGCTGTATGACCTTCTAGGTAGACAACTAGTTCTTGATCCTTAGACTCTAGAACTCTATGTATATATCGATCAATGTACCTTGTTGATATGATACAAATTAAACAATTGGTCACTTTCTTTGTTGTGAATTATTCTAGTGAATTAGTTGATTTTTGTGTTTGTTGAAAGTTGAGTTGTGTATACAAAAACAATTTAGATTTTATTTTATGACTATGCAGGGGTGAAAGAGAAATATTATTAGTTAGCCCATGCACAATCAACAATTGTCTCCTATCACAAACACAGAGATTTAATGTCGGACAAACTGCCTTAATGTCGGTCATTGACTGAATTCAAAAGTGGGTTGATCAAAGATTGTGTGGTTGTAGGTGATCGACATTGAACACCTTTAATAACACCTTCTTTGCCCATACGTCATCGTATCCCTATAATGTCGATTTTTCGCTGACATTAAAGGCCAATTTTGTACTAGTGTGTTGATAGGTTTGTTCGTTGAGAGACCTAAATAATCTTGTACTTTGTTTGAGGGAACAATCGTTGAAAATGCAAACAAAGTCCAACATTGGTTACAGAAGATAGATATTCATGGTATATAAGTACGGACAATTATTTCAATTGATATGAGAGACCTTTTGGAGTGATTTTAAAAGAACAATTACGAGGGTTTATGCCAAAAGTGGACAATATCATACTCGTACATCTATGTGGAGATTTATTTTCTTGTCATTATACTTTCTAGTTACTTAATTTGTATACACAATAACTAAAATTGAATCATGAAATGCTTAATTATTCTCTTTAACACTTGTAGGTTAACATTTTCTTTCTCCACATATATTATGTAATTTTGTTGATTGCATGAATATATTATCAAAAAGATAGTCTTACATGCTAACATAACGTTTTTGCAACGAATATGCTAATTTTTTTACTAACGAATTGGAGATTGTTTTGTTAGCATTAGTTATTTTGAATTCCTAATTTAAGTTACAAAACAATGTTGTCATTTGGCTGAAACTACAAAGTTGGCAAAAAAAAAAAAAATTAATCATACCATTATTCAAACATGTTCTTGTTGGGTCAGATTCAAGCGAGATAAACATATGCAACAAATAGTAAAACAACCTCATATTAAAAATAGCTATTCAAATATATAAATATTCTTACCTTTTGAAGTCTTTATCATCATAAGTGACTTACGTTTTAAGTCTTGTATTGGTTTTGATATCGATAATGACCATGTCAAAGGGAATCACACTTGTTTTTATTGGAATTCTCTTGGTTAACTTTGACATGATTGAGATAACAAATACAAGAAAATACATTGGTTATGGTCCTTTAAAAGGAGATGTTAGTCCTGGATGTAGCCGAAAGCATCCTAAACTTTGTAAATTAACTCCTGCAAATCCATATCGAAGAGGTTGCAATGCAATCGAACGTTGCAGGGGAAGAAATGATATTATAGATGGTGTAGAAGAAATTGCTAAAGGGGATGCTTCCACTAGGCCAACAATGAGCCCGAATGAAGAATACCATCTAGACTGA

mRNA sequence

ATGTGGGGAATCACACTTGTTTTTATTGGAATTCTCTTGGTTAACTTTGACATGATTGAGATAACAAATACAAGAAAATACATTGGTTATGGTCCTTTAAAAGGAGATGTTAGTCCTGGATGTAGCCGAAAGCATCCTAAACTTTGTAAATTAACTCCTGCAAATCCATATCGAAGAGGTTGCAATGCAATCGAACGTTGCAGGGGAAGAAATGATATTATAGATGGTGTAGAAGAAATTGCTAAAGGGGATGCTTCCACTAGGCCAACAATGAGCCCGAATGAAGAATACCATCTAGACTGA

Coding sequence (CDS)

ATGTGGGGAATCACACTTGTTTTTATTGGAATTCTCTTGGTTAACTTTGACATGATTGAGATAACAAATACAAGAAAATACATTGGTTATGGTCCTTTAAAAGGAGATGTTAGTCCTGGATGTAGCCGAAAGCATCCTAAACTTTGTAAATTAACTCCTGCAAATCCATATCGAAGAGGTTGCAATGCAATCGAACGTTGCAGGGGAAGAAATGATATTATAGATGGTGTAGAAGAAATTGCTAAAGGGGATGCTTCCACTAGGCCAACAATGAGCCCGAATGAAGAATACCATCTAGACTGA

Protein sequence

MWGITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRGRNDIIDGVEEIAKGDASTRPTMSPNEEYHLD
Homology
[Close]
BLAST of Lsi06G001010 vs. Swiss-Prot
Match: RLF15_ARATH (Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR--KYIGY-GPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + L+ F  +  T     +YI Y G   GD +  C + HP  CK   ANPYRRGC  
Sbjct: 9  VIVSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGT 68

Query: 67 IERCR 69
          IERCR
Sbjct: 69 IERCR 73

[Close]
BLAST of Lsi06G001010 vs. Swiss-Prot
Match: RLF20_ARATH (Protein RALF-like 20 OS=Arabidopsis thaliana GN=RALFL20 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 

Query: 12 LLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRG 70
          L++   ++  T   K IG   ++ D   GC    P  CK+ PANPY+ GC A +RCRG
Sbjct: 14 LMIILSIVMSTTEAKTIGNPAMREDEPKGCPPGSPASCKMQPANPYKPGCEASQRCRG 71

[Close]
BLAST of Lsi06G001010 vs. Swiss-Prot
Match: RLF9_ARATH (Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR--KYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + LV F  +  T     +YI Y  + +GD +  C + HP  CK   ANPY+RGC  
Sbjct: 9  VILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEK 68

Query: 67 IERCRG 70
          I RCRG
Sbjct: 69 INRCRG 74

[Close]
BLAST of Lsi06G001010 vs. TrEMBL
Match: A0A0A0L8B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 4   ITLVFIGILLVNFDMIEITNTRKYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCN 63
           +TLVFIGILLV+FDMI ITN RK+I YG +  GDVSPGCS  HP+LC++  ANPY+RGCN
Sbjct: 7   MTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCN 66

Query: 64  AIERCRGRNDIIDGVEEIAKGDASTRPTMSPNEE 97
            I+RCR  NDIID  EE  +GDAS  P++SPN E
Sbjct: 67  RIDRCREGNDIIDAEEEHIEGDASISPSISPNIE 100

[Close]
BLAST of Lsi06G001010 vs. TrEMBL
Match: A0A067F0E4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041712mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 26 KYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRG 70
          K IGYG +    +PGCS  HP+LCK+ P NPY RGC    +CRG
Sbjct: 31 KEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

[Close]
BLAST of Lsi06G001010 vs. TrEMBL
Match: V4UF46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018043mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 26 KYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRG 70
          K IGYG +    +PGCS  HP+LCK+ P NPY RGC    +CRG
Sbjct: 31 KEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

[Close]
BLAST of Lsi06G001010 vs. TrEMBL
Match: A0A078FI75_BRANA (BnaA09g13680D protein OS=Brassica napus GN=BnaA09g13680D PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR-KYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIE 66
          V + + LV    +  T T  +YI Y  L GD S  C + HP  CK   ANPY RGC  I+
Sbjct: 9  VIVSLFLVVLLALAATQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPYTRGCETID 68

Query: 67 RCRGRN 72
          RCRG++
Sbjct: 69 RCRGQS 74

[Close]
BLAST of Lsi06G001010 vs. TrEMBL
Match: D0VNY5_BRARC (RALF OS=Brassica rapa var. parachinensis PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR-KYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIE 66
          V + + LV    +  T T  +YI Y  L GD S  C + HP  CK   ANPY RGC  I+
Sbjct: 9  VVVSLFLVVLLALAATQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPYTRGCETID 68

Query: 67 RCRGRN 72
          RCRG++
Sbjct: 69 RCRGQS 74

[Close]
BLAST of Lsi06G001010 vs. TAIR10
Match: AT2G22055.1 (AT2G22055.1 RALF-like 15)

HSP 1 Score: 53.9 bits (128), Expect = 6.5e-08
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR--KYIGY-GPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + L+ F  +  T     +YI Y G   GD +  C + HP  CK   ANPYRRGC  
Sbjct: 9  VIVSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGT 68

Query: 67 IERCR 69
          IERCR
Sbjct: 69 IERCR 73

[Close]
BLAST of Lsi06G001010 vs. TAIR10
Match: AT2G34825.1 (AT2G34825.1 RALF-like 20)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 

Query: 12 LLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRG 70
          L++   ++  T   K IG   ++ D   GC    P  CK+ PANPY+ GC A +RCRG
Sbjct: 14 LMIILSIVMSTTEAKTIGNPAMREDEPKGCPPGSPASCKMQPANPYKPGCEASQRCRG 71

[Close]
BLAST of Lsi06G001010 vs. TAIR10
Match: AT1G61566.1 (AT1G61566.1 ralf-like 9)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR--KYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + LV F  +  T     +YI Y  + +GD +  C + HP  CK   ANPY+RGC  
Sbjct: 9  VILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEK 68

Query: 67 IERCRG 70
          I RCRG
Sbjct: 69 INRCRG 74

[Close]
BLAST of Lsi06G001010 vs. TAIR10
Match: AT4G11653.1 (AT4G11653.1 RALF-like 29)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 1 

Query: 6  LVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLC--KLTPANPYRRGCNA 65
          + F+ IL+V    I   + ++YI Y P++ D+  GC  + P     K TPANPYRR C  
Sbjct: 7  VTFVTILIVLCVFISTIHAKRYIEY-PIRLDLGKGCDPRFPTAACYKRTPANPYRRPCTT 66

Query: 66 IERCR 69
            RCR
Sbjct: 67 ANRCR 70

[Close]
BLAST of Lsi06G001010 vs. TAIR10
Match: AT2G32885.1 (AT2G32885.1 Rapid alkalinization factor (RALF) family protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.7e-06
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 1 

Query: 5  TLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAI 64
          T+V    L++   ++  T     IG   ++ D+  GC+      CK+ PANPY+ GC A 
Sbjct: 7  TVVQSFALIIIISIVMSTTEANSIGAPAMREDLPKGCAPGSSAGCKMQPANPYKPGCEAS 66

Query: 65 ERCRG 70
          +RCRG
Sbjct: 67 QRCRG 71

[Close]
BLAST of Lsi06G001010 vs. NCBI nr
Match: gi|700202865|gb|KGN57998.1| (hypothetical protein Csa_3G426350 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-26
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 4   ITLVFIGILLVNFDMIEITNTRKYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCN 63
           +TLVFIGILLV+FDMI ITN RK+I YG +  GDVSPGCS  HP+LC++  ANPY+RGCN
Sbjct: 7   MTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCN 66

Query: 64  AIERCRGRNDIIDGVEEIAKGDASTRPTMSPNEE 97
            I+RCR  NDIID  EE  +GDAS  P++SPN E
Sbjct: 67  RIDRCREGNDIIDAEEEHIEGDASISPSISPNIE 100

[Close]
BLAST of Lsi06G001010 vs. NCBI nr
Match: gi|1009128592|ref|XP_015881314.1| (PREDICTED: protein RALF-like 9 [Ziziphus jujuba])

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1 

Query: 3  GITLVFIGI-LLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGC 62
          G+ +V   + +++  ++I  +   K++ YG L  DV PGC  KHP+ CK + ANPY RGC
Sbjct: 6  GLLVVIASLQVMIWMNLIGQSEGSKFLQYGALDRDVIPGCGPKHPEECKKSQANPYTRGC 65

Query: 63 NAIERCR 69
           + ERCR
Sbjct: 66 LSEERCR 72

[Close]
BLAST of Lsi06G001010 vs. NCBI nr
Match: gi|674920311|emb|CDY12906.1| (BnaA09g13680D [Brassica napus])

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR-KYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIE 66
          V + + LV    +  T T  +YI Y  L GD S  C + HP  CK   ANPY RGC  I+
Sbjct: 9  VIVSLFLVVLLALAATQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPYTRGCETID 68

Query: 67 RCRGRN 72
          RCRG++
Sbjct: 69 RCRGQS 74

[Close]
BLAST of Lsi06G001010 vs. NCBI nr
Match: gi|567910725|ref|XP_006447676.1| (hypothetical protein CICLE_v10018043mg [Citrus clementina])

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 26 KYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRG 70
          K IGYG +    +PGCS  HP+LCK+ P NPY RGC    +CRG
Sbjct: 31 KEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

[Close]
BLAST of Lsi06G001010 vs. NCBI nr
Match: gi|262093030|gb|ACY25867.1| (RALF [Brassica rapa var. parachinensis])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 7  VFIGILLVNFDMIEITNTR-KYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIE 66
          V + + LV    +  T T  +YI Y  L GD S  C + HP  CK   ANPY RGC  I+
Sbjct: 9  VVVSLFLVVLLALAATQTESRYINYHALHGDHSLICDKAHPNTCKKEEANPYTRGCETID 68

Query: 67 RCRGRN 72
          RCRG++
Sbjct: 69 RCRGQS 74

The following BLAST results are available for this feature:
BLAST of Lsi06G001010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF15_ARATH1.2e-0643.08Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1[more]
RLF20_ARATH2.0e-0639.66Protein RALF-like 20 OS=Arabidopsis thaliana GN=RALFL20 PE=3 SV=1[more]
RLF9_ARATH2.6e-0640.91Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1[more]
BLAST of Lsi06G001010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B1_CUCSA1.6e-2665.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1[more]
A0A067F0E4_CITSI2.4e-0654.55Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041712mg PE=4 SV=1[more]
V4UF46_9ROSI2.4e-0654.55Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018043mg PE=4 SV=1[more]
A0A078FI75_BRANA2.4e-0643.94BnaA09g13680D protein OS=Brassica napus GN=BnaA09g13680D PE=4 SV=1[more]
D0VNY5_BRARC3.1e-0643.94RALF OS=Brassica rapa var. parachinensis PE=4 SV=1[more]
BLAST of Lsi06G001010 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22055.16.5e-0843.08 RALF-like 15[more]
AT2G34825.11.1e-0739.66 RALF-like 20[more]
AT1G61566.11.5e-0740.91 ralf-like 9[more]
AT4G11653.11.2e-0640.00 RALF-like 29[more]
AT2G32885.12.7e-0635.38 Rapid alkalinization factor (RALF) family protein[more]
BLAST of Lsi06G001010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202865|gb|KGN57998.1|2.3e-2665.96hypothetical protein Csa_3G426350 [Cucumis sativus][more]
gi|1009128592|ref|XP_015881314.1|3.4e-0641.79PREDICTED: protein RALF-like 9 [Ziziphus jujuba][more]
gi|674920311|emb|CDY12906.1|3.4e-0643.94BnaA09g13680D [Brassica napus][more]
gi|567910725|ref|XP_006447676.1|3.4e-0654.55hypothetical protein CICLE_v10018043mg [Citrus clementina][more]
gi|262093030|gb|ACY25867.1|4.4e-0643.94RALF [Brassica rapa var. parachinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G001010.1Lsi06G001010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 23..69
score: 9.6
NoneNo IPR availablePANTHERPTHR34270FAMILY NOT NAMEDcoord: 1..80
score: 5.0
NoneNo IPR availablePANTHERPTHR34270:SF1PROTEIN RALF-LIKE 10-RELATEDcoord: 1..80
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G001010Cla005199Watermelon (97103) v1lsiwmB392
Lsi06G001010ClCG03G017300Watermelon (Charleston Gray)lsiwcgB362
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G001010Watermelon (97103) v2lsiwmbB363
Lsi06G001010Watermelon (97103) v2lsiwmbB365
Lsi06G001010Wax gourdlsiwgoB486
Lsi06G001010Wax gourdlsiwgoB507
Lsi06G001010Bottle gourd (USVL1VR-Ls)lsilsiB060
Lsi06G001010Bottle gourd (USVL1VR-Ls)lsilsiB161
Lsi06G001010Cucumber (Gy14) v1cgylsiB101
Lsi06G001010Cucumber (Gy14) v1cgylsiB304
Lsi06G001010Cucurbita maxima (Rimu)cmalsiB076
Lsi06G001010Cucurbita maxima (Rimu)cmalsiB178
Lsi06G001010Cucurbita maxima (Rimu)cmalsiB734
Lsi06G001010Cucurbita moschata (Rifu)cmolsiB062
Lsi06G001010Cucurbita moschata (Rifu)cmolsiB168
Lsi06G001010Cucurbita moschata (Rifu)cmolsiB723
Lsi06G001010Cucurbita pepo (Zucchini)cpelsiB095
Lsi06G001010Cucurbita pepo (Zucchini)cpelsiB302
Lsi06G001010Cucurbita pepo (Zucchini)cpelsiB682
Lsi06G001010Wild cucumber (PI 183967)cpilsiB059
Lsi06G001010Wild cucumber (PI 183967)cpilsiB134
Lsi06G001010Cucumber (Chinese Long) v2culsiB136
Lsi06G001010Cucumber (Chinese Long) v2culsiB058
Lsi06G001010Melon (DHL92) v3.5.1lsimeB396
Lsi06G001010Melon (DHL92) v3.5.1lsimeB416
Lsi06G001010Watermelon (Charleston Gray)lsiwcgB359
Lsi06G001010Watermelon (Charleston Gray)lsiwcgB364
Lsi06G001010Watermelon (97103) v1lsiwmB396
Lsi06G001010Watermelon (97103) v1lsiwmB409
Lsi06G001010Cucumber (Gy14) v2cgyblsiB055
Lsi06G001010Melon (DHL92) v3.6.1lsimedB418
Lsi06G001010Cucumber (Chinese Long) v3cuclsiB068