Lsi06G000460 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000460
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptionphotosynthetic electron transfer B chrC:74841-76292 FORWARD
Locationchr06 : 368076 .. 369869 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTATTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACACCTTTAATGGGTGTCGCGATGGGTCTATTTGCGATATTCCTATGTATTATTTTGGAGATTTATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATTAGATTCGATTCACAAGAACCCCTAAATAACTTTTCAATAAAAAGGAAAGTTTAAAGTATGTAGGTTTCCGCTTTTTAGCCCACTCTTTTTTGGTAGTTCGATCGTGGAATTTATTTTTTTCTGTATTTCCGGAATATGAGTGTGTGACTTGTTAGAATTGATCCTATGGATACGACAGAGAAGAAGTCGGTCATCTTGATCAAGATGATTTTATCTCGTTGGATATTCAGTCTAGGCTAGTATCTGGAGCACAGAATATATGAAATAGATTCCAAAATATTAGAACAAATATTAGAACTATGATTCATACTTATCAGACCTCGTGGCCGGACTCCGAAAAAAGATTTAGAAGTGATAAATTCAAAAAATTTTATTCTTTCGTTTATACTATACTTATTTTGGTTAAAGGATAAACGTTTCTTTGTCTTTTTTTCATTATATTCAGTCATTGAATAAACATTGAATAAGTGATAATCCAAGGGTTCTTACTCAGGGAATTTTTGAACTTTTTTTGGAAGGTTTTTTTATTGAATCATCGTGGTTCTAGTCTGAATCTAAGGTTTTAATTGATTCATAGGGTCTTAACAAGAGAATTCCTATCAATAATAAAGAAAACAAGAGTAAAGTCGCATTACATACAAATCAAAGAAAAAAATAGGTAAATAGAAGATTCAAGAGGCCCCTAATGATCAATATAAATACGAATGAGCCGACTTGATATTTGGGCATTATAACTACAAAGAAGACTTTTCGGATTTTGATTCTTTCGTATCTTCATAGAAAAAATTGAATCATAGCATTAAGAAGTTTGAAACTTTTTAGTACACATATCCGTTACGAGCGGTATTTGGGTGTTTCTGTTTGAGCCGTACGAGACGAAATTCTCATATACGGTTCTCAGAGGGGGGTCCCCTTGGTTTACCTATCTCAATAAAGTGTATGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTACCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACCGGTGGATTTAAAAAACCTCGTGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

mRNA sequence

ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTATTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGAGGGGGGTCCCCTTGGTTTACCTATCTCAATAAAGTGTATGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTACCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACCGGTGGATTTAAAAAACCTCGTGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

Coding sequence (CDS)

ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTATTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGAGGGGGGTCCCCTTGGTTTACCTATCTCAATAAAGTGTATGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTACCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACCGGTGGATTTAAAAAACCTCGTGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

Protein sequence

MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Homology
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BLAST of Lsi06G000460 vs. Swiss-Prot
Match: CYB6_CUCSA (Cytochrome b6 OS=Cucumis sativus GN=petB PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.2e-119
Identity = 213/215 (99.07%), Postives = 215/215 (100.00%), Query Frame = 1 

Query: 45  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 104
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 105 TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 164
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 165 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 224
           GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 180

Query: 225 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

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BLAST of Lsi06G000460 vs. Swiss-Prot
Match: CYB6_COFAR (Cytochrome b6 OS=Coffea arabica GN=petB PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.2e-119
Identity = 213/215 (99.07%), Postives = 215/215 (100.00%), Query Frame = 1 

Query: 45  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 104
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 105 TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 164
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 165 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 224
           GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 180

Query: 225 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

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BLAST of Lsi06G000460 vs. Swiss-Prot
Match: CYB6_LIRTU (Cytochrome b6 OS=Liriodendron tulipifera GN=petB PE=3 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.5e-119
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 1 

Query: 45  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 104
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 105 TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 164
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 165 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 224
           GV+LAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVILAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 180

Query: 225 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

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BLAST of Lsi06G000460 vs. Swiss-Prot
Match: CYB6_PANGI (Cytochrome b6 OS=Panax ginseng GN=petB PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 2.6e-119
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 1 

Query: 45  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 104
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 105 TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 164
           TVT+AFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTDAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 165 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 224
           GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 180

Query: 225 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

[Close]
BLAST of Lsi06G000460 vs. Swiss-Prot
Match: CYB6_DAUCA (Cytochrome b6 OS=Daucus carota GN=petB PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 2.6e-119
Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 1 

Query: 45  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 104
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 105 TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 164
           TVT+AFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTDAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 165 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 224
           GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 180

Query: 225 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

[Close]
BLAST of Lsi06G000460 vs. TrEMBL
Match: X2F8I9_LAGSI (Cytochrome b6 OS=Lagenaria siceraria GN=petB PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 8.5e-125
Identity = 224/232 (96.55%), Postives = 226/232 (97.41%), Query Frame = 1 

Query: 28  SEYGKVAPGGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 87
           S++      GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC
Sbjct: 2   SKFSYTVLRGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 61

Query: 88  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 147
           FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR
Sbjct: 62  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 121

Query: 148 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 207
           VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS
Sbjct: 122 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 181

Query: 208 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 182 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

[Close]
BLAST of Lsi06G000460 vs. TrEMBL
Match: G3ETS7_CUCME (Cytochrome b6 OS=Cucumis melo subsp. melo GN=petB PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 8.5e-125
Identity = 224/232 (96.55%), Postives = 226/232 (97.41%), Query Frame = 1 

Query: 28  SEYGKVAPGGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 87
           S++      GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC
Sbjct: 2   SKFSYTVLRGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 61

Query: 88  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 147
           FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR
Sbjct: 62  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 121

Query: 148 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 207
           VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS
Sbjct: 122 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 181

Query: 208 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 182 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

[Close]
BLAST of Lsi06G000460 vs. TrEMBL
Match: X2F2W5_LAGSI (Cytochrome b6 (Fragment) OS=Lagenaria siceraria GN=petB PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 1.9e-124
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 37  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 96
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 9   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 68

Query: 97  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 156
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK
Sbjct: 69  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 128

Query: 157 PRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 216
           PRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS
Sbjct: 129 PRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS 188

Query: 217 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 189 ASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 231

[Close]
BLAST of Lsi06G000460 vs. TrEMBL
Match: X2F3N3_LAGSI (Cytochrome b6 (Fragment) OS=Lagenaria siceraria GN=petB PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.5e-124
Identity = 223/231 (96.54%), Postives = 225/231 (97.40%), Query Frame = 1 

Query: 28  SEYGKVAPGGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 87
           S++      GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC
Sbjct: 2   SKFSYTVLRGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 61

Query: 88  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 147
           FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR
Sbjct: 62  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 121

Query: 148 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 207
           VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS
Sbjct: 122 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 181

Query: 208 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGP 259
           PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGP
Sbjct: 182 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGP 232

[Close]
BLAST of Lsi06G000460 vs. TrEMBL
Match: A0A0S2IDT7_9ROSI (Cytochrome b6 OS=Cucurbita argyrosperma GN=petB PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 4.2e-124
Identity = 223/232 (96.12%), Postives = 225/232 (96.98%), Query Frame = 1 

Query: 28  SEYGKVAPGGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 87
           S++      GGSPWF YLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC
Sbjct: 2   SKFSYTVLRGGSPWFPYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTC 61

Query: 88  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 147
           FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR
Sbjct: 62  FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFR 121

Query: 148 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 207
           VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS
Sbjct: 122 VYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGS 181

Query: 208 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 182 PLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

[Close]
BLAST of Lsi06G000460 vs. TAIR10
Match: ATCG00720.1 (ATCG00720.1 photosynthetic electron transfer B)

HSP 1 Score: 421.0 bits (1081), Expect = 5.3e-118
Identity = 209/215 (97.21%), Postives = 212/215 (98.60%), Query Frame = 1 

Query: 45  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 104
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 105 TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 164
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVT 120

Query: 165 GVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTL 224
           GVVL VLTASFGVTGYSLP DQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTL
Sbjct: 121 GVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTL 180

Query: 225 TRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           TRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct: 181 TRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

[Close]
BLAST of Lsi06G000460 vs. TAIR10
Match: AT2G07727.1 (AT2G07727.1 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal)

HSP 1 Score: 131.3 bits (329), Expect = 8.4e-31
Identity = 66/189 (34.92%), Postives = 105/189 (55.56%), Query Frame = 1 

Query: 71  PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVH 130
           P +++ ++  G +   C ++Q+ TG  +  +Y P V  AF SV++IM +   GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 131 RWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYW 190
              ASM ++++ LH+FR      +  PRE  W  GVV+ +L       GY LP  Q+ +W
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFW 148

Query: 191 AVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 250
              ++T +  AIPV+G  +V  L G  SV  +TL RF+SLH  +LP +     L+H   +
Sbjct: 149 GATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HLLPFILVGASLLHLAAL 208

Query: 251 RKQGISGPL 260
            + G + PL
Sbjct: 209 HQYGSNNPL 216

[Close]
BLAST of Lsi06G000460 vs. TAIR10
Match: ATMG00220.1 (ATMG00220.1 apocytochrome b)

HSP 1 Score: 131.3 bits (329), Expect = 8.4e-31
Identity = 66/189 (34.92%), Postives = 105/189 (55.56%), Query Frame = 1 

Query: 71  PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVH 130
           P +++ ++  G +   C ++Q+ TG  +  +Y P V  AF SV++IM +   GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 131 RWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYW 190
              ASM ++++ LH+FR      +  PRE  W  GVV+ +L       GY LP  Q+ +W
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFW 148

Query: 191 AVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 250
              ++T +  AIPV+G  +V  L G  SV  +TL RF+SLH  +LP +     L+H   +
Sbjct: 149 GATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HLLPFILVGASLLHLAAL 208

Query: 251 RKQGISGPL 260
            + G + PL
Sbjct: 209 HQYGSNNPL 216

[Close]
BLAST of Lsi06G000460 vs. TAIR10
Match: ATCG00710.1 (ATCG00710.1 photosystem II reaction center protein H)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-12
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 

Query: 1  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGGGS 40
          MATQTV+DSSRSGPR T VG LLKPLNSEYGKVAPG G+
Sbjct: 1  MATQTVEDSSRSGPRSTTVGKLLKPLNSEYGKVAPGWGT 39

[Close]
BLAST of Lsi06G000460 vs. NCBI nr
Match: gi|743810316|ref|XP_011018713.1| (PREDICTED: cytochrome b6 [Populus euphratica])

HSP 1 Score: 492.7 bits (1267), Expect = 4.0e-136
Identity = 249/269 (92.57%), Postives = 252/269 (93.68%), Query Frame = 1 

Query: 1   MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGGGSP----------WFTYLNKVYD 60
           MATQ+V+ SSRSGPRRTIVGDLLKPLNSEYGKVAPG G+            FTYLNKVYD
Sbjct: 1   MATQSVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAFTYLNKVYD 60

Query: 61  WFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF 120
           WFEERLEIQ IADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF
Sbjct: 61  WFEERLEIQTIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF 120

Query: 121 ASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAV 180
           ASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVL V
Sbjct: 121 ASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGV 180

Query: 181 LTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSL 240
           LTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSL
Sbjct: 181 LTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSL 240

Query: 241 HTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           HTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 241 HTFVLPLLTAVFMLMHFPMIRKQGISGPL 269

[Close]
BLAST of Lsi06G000460 vs. NCBI nr
Match: gi|1012240492|ref|XP_015940753.1| (PREDICTED: photosystem II CP47 reaction center protein-like [Arachis duranensis])

HSP 1 Score: 480.7 bits (1236), Expect = 1.6e-132
Identity = 246/285 (86.32%), Postives = 250/285 (87.72%), Query Frame = 1 

Query: 1   MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGGGSP-------------------- 60
           MATQTV+ SSRSGPRRT VG LLKPLNSEYGKVAPG G+                     
Sbjct: 435 MATQTVESSSRSGPRRTTVGALLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEI 494

Query: 61  ------WFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 120
                 WFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGIT+TCFLVQVAT
Sbjct: 495 YNSSILWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITVTCFLVQVAT 554

Query: 121 GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 180
           GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF
Sbjct: 555 GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 614

Query: 181 KKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 240
           KKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIP IGS +VELLR
Sbjct: 615 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPGIGSSVVELLR 674

Query: 241 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           GSASVGQSTLT FYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 675 GSASVGQSTLTCFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 719

[Close]
BLAST of Lsi06G000460 vs. NCBI nr
Match: gi|923719282|ref|XP_013664474.1| (PREDICTED: cytochrome b [Brassica napus])

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-130
Identity = 243/281 (86.48%), Postives = 249/281 (88.61%), Query Frame = 1 

Query: 1   MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGGGSP-------------------- 60
           MATQTV++SSRSGPRRT VGDLLKPLNSEYGKVAPG G+                     
Sbjct: 1   MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61  ------WFT-YLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVA 120
                 W + YLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVA
Sbjct: 61  YNSSVLWSSAYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVA 120

Query: 121 TGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG 180
           TGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG
Sbjct: 121 TGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG 180

Query: 181 FKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 240
           FKKPRELTWVTGVVLAVLTASFGVTGYSLP DQ+GYWAVKIVTGVP+AIPVIGSPLVELL
Sbjct: 181 FKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGSPLVELL 240

Query: 241 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQG 255
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQG
Sbjct: 241 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQG 281

[Close]
BLAST of Lsi06G000460 vs. NCBI nr
Match: gi|685382180|ref|XP_009123576.1| (PREDICTED: LOW QUALITY PROTEIN: cytochrome b [Brassica rapa])

HSP 1 Score: 470.7 bits (1210), Expect = 1.6e-129
Identity = 239/280 (85.36%), Postives = 245/280 (87.50%), Query Frame = 1 

Query: 1   MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGGGSP-------------------- 60
           MATQTV+DSS+  P+RT  G LLKPLNSEYGKVAPG G+                     
Sbjct: 1   MATQTVEDSSKPRPKRTGAGSLLKPLNSEYGKVAPGWGTTPFMGIAMALFAIFLSIILEI 60

Query: 61  ------WFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 120
                 WFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT
Sbjct: 61  YNSSILWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVAT 120

Query: 121 GFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 180
           GFAMTFYYRPTVTEAF+SVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF
Sbjct: 121 GFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGF 180

Query: 181 KKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLR 240
           KKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVP+AIPVIGSPLVELLR
Sbjct: 181 KKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLR 240

Query: 241 GSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQG 255
           GSASVGQSTLTRFYSLH FVLPLLTAVFMLMHFPMIRKQG
Sbjct: 241 GSASVGQSTLTRFYSLHAFVLPLLTAVFMLMHFPMIRKQG 280

[Close]
BLAST of Lsi06G000460 vs. NCBI nr
Match: gi|659134042|ref|XP_008467004.1| (PREDICTED: LOW QUALITY PROTEIN: cytochrome b6, partial [Cucumis melo])

HSP 1 Score: 456.1 bits (1172), Expect = 4.2e-125
Identity = 224/238 (94.12%), Postives = 228/238 (95.80%), Query Frame = 1 

Query: 22  LLKPLNSEYGKVAPGGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLG 81
           L +P  +++      GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLG
Sbjct: 23  LFEPYETKFSYTVLRGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLG 82

Query: 82  GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMM 141
           GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMM
Sbjct: 83  GITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMM 142

Query: 142 ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEA 201
           ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEA
Sbjct: 143 ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEA 202

Query: 202 IPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260
           IPVIGSPLVELLRGSASVGQSTLT FYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 203 IPVIGSPLVELLRGSASVGQSTLTXFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 260

The following BLAST results are available for this feature:
BLAST of Lsi06G000460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYB6_CUCSA1.2e-11999.07Cytochrome b6 OS=Cucumis sativus GN=petB PE=3 SV=1[more]
CYB6_COFAR1.2e-11999.07Cytochrome b6 OS=Coffea arabica GN=petB PE=3 SV=1[more]
CYB6_LIRTU1.5e-11998.60Cytochrome b6 OS=Liriodendron tulipifera GN=petB PE=3 SV=1[more]
CYB6_PANGI2.6e-11998.60Cytochrome b6 OS=Panax ginseng GN=petB PE=3 SV=1[more]
CYB6_DAUCA2.6e-11998.60Cytochrome b6 OS=Daucus carota GN=petB PE=3 SV=1[more]
BLAST of Lsi06G000460 vs. TrEMBL
Match NameE-valueIdentityDescription
X2F8I9_LAGSI8.5e-12596.55Cytochrome b6 OS=Lagenaria siceraria GN=petB PE=3 SV=1[more]
G3ETS7_CUCME8.5e-12596.55Cytochrome b6 OS=Cucumis melo subsp. melo GN=petB PE=3 SV=1[more]
X2F2W5_LAGSI1.9e-124100.00Cytochrome b6 (Fragment) OS=Lagenaria siceraria GN=petB PE=3 SV=1[more]
X2F3N3_LAGSI2.5e-12496.54Cytochrome b6 (Fragment) OS=Lagenaria siceraria GN=petB PE=3 SV=1[more]
A0A0S2IDT7_9ROSI4.2e-12496.12Cytochrome b6 OS=Cucurbita argyrosperma GN=petB PE=3 SV=1[more]
BLAST of Lsi06G000460 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00720.15.3e-11897.21ATCG00720.1 photosynthetic electron transfer B[more]
AT2G07727.18.4e-3134.92 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal[more]
ATMG00220.18.4e-3134.92ATMG00220.1 apocytochrome b[more]
ATCG00710.13.0e-1284.62ATCG00710.1 photosystem II reaction center protein H[more]
BLAST of Lsi06G000460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|743810316|ref|XP_011018713.1|4.0e-13692.57PREDICTED: cytochrome b6 [Populus euphratica][more]
gi|1012240492|ref|XP_015940753.1|1.6e-13286.32PREDICTED: photosystem II CP47 reaction center protein-like [Arachis duranensis][more]
gi|923719282|ref|XP_013664474.1|1.1e-13086.48PREDICTED: cytochrome b [Brassica napus][more]
gi|685382180|ref|XP_009123576.1|1.6e-12985.36PREDICTED: LOW QUALITY PROTEIN: cytochrome b [Brassica rapa][more]
gi|659134042|ref|XP_008467004.1|4.2e-12594.12PREDICTED: LOW QUALITY PROTEIN: cytochrome b6, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO:0022904respiratory electron transport chain
GO:0050821protein stabilization
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0005506iron ion binding
GO:0045158electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
GO:0016491oxidoreductase activity
GO:0009055electron carrier activity
GO:0042301phosphate ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO:0009523photosystem II
Vocabulary: INTERPRO
TermDefinition
IPR027387Cytb/b6-like_sf
IPR023530Cyt_B6_PetB
IPR016174Di-haem_cyt_TM
IPR005797Cyt_b/b6_N
IPR001056PSII_PsbH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0050821 protein stabilization
biological_process GO:0022904 respiratory electron transport chain
biological_process GO:0022900 electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0042301 phosphate ion binding
molecular_function GO:0009055 electron carrier activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000460.1Lsi06G000460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001056Photosystem II PsbH, phosphoproteinPRODOMPD003584coord: 15..42
score: 5.
IPR001056Photosystem II PsbH, phosphoproteinPFAMPF00737PsbHcoord: 16..38
score: 2.
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 66..254
score: 7.0
IPR005797Cytochrome b/b6, N-terminalPROFILEPS51002CYTB_NTERcoord: 48..259
score: 36
IPR016174Di-haem cytochrome, transmembraneunknownSSF81342Transmembrane di-heme cytochromescoord: 49..259
score: 3.4
IPR023530Cytochrome b6, PetBHAMAPMF_00633Cytb6_f_cytb6coord: 45..259
score: 45
IPR023530Cytochrome b6, PetBPIRPIRSF000032Cytochrome_b6coord: 45..259
score: 3.3E
IPR027387Cytochrome b/b6-like domainGENE3DG3DSA:1.20.810.10coord: 50..258
score: 3.0
NoneNo IPR availableGENE3DG3DSA:1.20.5.880coord: 14..38
score: 7.2
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 45..259
score: 4.0E
NoneNo IPR availablePANTHERPTHR19271:SF8CYTOCHROME B6coord: 45..259
score: 4.0E
NoneNo IPR availableunknownSSF161025Photosystem II 10 kDa phosphoprotein PsbHcoord: 14..40
score: 5.