Lsi06G000440 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionResistance protein Cre
Locationchr06 : 366282 .. 366572 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACCTGCTGCAATATGATGCGAGGCTATTCCGCCCGGAACAAAAGGATCAAACCCTTCGACACCCCACGCAGGATTTACAGCTTGTACCCTTCCGGTTAATCCATAAGGATCGGATACCCATATTCCCGGACCATACAATCCGGTTACATGAAATGCACCAAAACCAAAGCAACCCAACCCTGAGAGAAATAAATGAATTCCAAAAATCTTCGGCAAATCCAAAGAAGGTTTTCCTGTACGTTCATCACAAAATATTTCTAGATCCCAATACACCCAATGCCAGATAG

mRNA sequence

ATGTACCTGCTGCAATATGATGCGAGGCTATTCCGCCCGGAACAAAAGGATCAAACCCTTCGACACCCCACGCAGGATTTACAGCTTGTACCCTTCCGGTTAATCCATAAGGATCGGATACCCATATTCCCGGACCATACAATCCGGTTACATGAAATGCACCAAAACCAAAGCAACCCAACCCTGAGAGAAATAAATGAATTCCAAAAATCTTCGGCAAATCCAAAGAAGGTTTTCCTGTACGTTCATCACAAAATATTTCTAGATCCCAATACACCCAATGCCAGATAG

Coding sequence (CDS)

ATGTACCTGCTGCAATATGATGCGAGGCTATTCCGCCCGGAACAAAAGGATCAAACCCTTCGACACCCCACGCAGGATTTACAGCTTGTACCCTTCCGGTTAATCCATAAGGATCGGATACCCATATTCCCGGACCATACAATCCGGTTACATGAAATGCACCAAAACCAAAGCAACCCAACCCTGAGAGAAATAAATGAATTCCAAAAATCTTCGGCAAATCCAAAGAAGGTTTTCCTGTACGTTCATCACAAAATATTTCTAGATCCCAATACACCCAATGCCAGATAG

Protein sequence

MYLLQYDARLFRPEQKDQTLRHPTQDLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHKIFLDPNTPNAR
Homology
[Close]
BLAST of Lsi06G000440 vs. TrEMBL
Match: Q2HP06_ARAHY (Resistance protein Cre (Fragment) OS=Arachis hypogaea GN=CRE PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 31 PFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHKIFLDP 90
          PFRL HKDR PI  DHTI LHEM QNQ+ P L+EINEFQ+  ANPK+V LYVHHK FLDP
Sbjct: 4  PFRLGHKDRTPISQDHTILLHEMRQNQNKPPLQEINEFQRFLANPKRVCLYVHHKRFLDP 63

Query: 91 NTPNAR 97
          N PNAR
Sbjct: 64 NRPNAR 69

[Close]
BLAST of Lsi06G000440 vs. TrEMBL
Match: A4QM48_PINKO (ORF73a OS=Pinus koraiensis PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-12
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 26 DLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHK 85
          D  +V F+L+HKD+ PI  DHT  LHEM Q ++   LR INEFQ   AN  KVF YVHH+
Sbjct: 3  DPLVVFFQLVHKDQTPISQDHTNPLHEMLQIRNKLLLRGINEFQILLANLNKVFPYVHHR 62

Query: 86 IFLDPNTPNAR 97
          IF DPN PNAR
Sbjct: 63 IFPDPNIPNAR 73

[Close]
BLAST of Lsi06G000440 vs. NCBI nr
Match: gi|62177369|gb|AAX70975.1| (resistance protein Cre [Arachis hypogaea])

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 1 

Query: 31 PFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHKIFLDP 90
          PFRL HKDR PI  DHTI LHEM QNQ+ P L+EINEFQ+  ANPK+V LYVHHK FLDP
Sbjct: 4  PFRLGHKDRTPISQDHTILLHEMRQNQNKPPLQEINEFQRFLANPKRVCLYVHHKRFLDP 63

Query: 91 NTPNAR 97
          N PNAR
Sbjct: 64 NRPNAR 69

[Close]
BLAST of Lsi06G000440 vs. NCBI nr
Match: gi|145048767|gb|ABP35385.1| (ORF73a [Pinus koraiensis])

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-12
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 26 DLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHK 85
          D  +V F+L+HKD+ PI  DHT  LHEM Q ++   LR INEFQ   AN  KVF YVHH+
Sbjct: 3  DPLVVFFQLVHKDQTPISQDHTNPLHEMLQIRNKLLLRGINEFQILLANLNKVFPYVHHR 62

Query: 86 IFLDPNTPNAR 97
          IF DPN PNAR
Sbjct: 63 IFPDPNIPNAR 73

The following BLAST results are available for this feature:
BLAST of Lsi06G000440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G000440 vs. TrEMBL
Match NameE-valueIdentityDescription
Q2HP06_ARAHY2.3e-1974.24Resistance protein Cre (Fragment) OS=Arachis hypogaea GN=CRE PE=4 SV=1[more]
A4QM48_PINKO2.8e-1259.15ORF73a OS=Pinus koraiensis PE=4 SV=1[more]
BLAST of Lsi06G000440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G000440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|62177369|gb|AAX70975.1|3.3e-1974.24resistance protein Cre [Arachis hypogaea][more]
gi|145048767|gb|ABP35385.1|4.0e-1259.15ORF73a [Pinus koraiensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000440.1Lsi06G000440.1mRNA