Lsi06G000410 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ATP-dependent Clp protease proteolytic subunit
Location	chr06 : 364278 .. 364738 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTAAGAAAAAGCCCCTTCATTAGAAGTTAGAAAGAGTCCTCTAAAGAAGGCTAAAATCTAAACATTGATTCTTTTTTTCGCTAGTTTTTTTGAACCGTATGCATCAAAAGGTGCCCGTACGGTTCTTAAGGGATACAATTTTATCCTAATCAACCGACTTTATCGAGAAAGATTACTTTTTTTAGGCCAAGAGGTTGATAGCGAGATCTCGAATCAACTTATTGGTCTTATGGTATATCTCAGTATAGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTAATACCCGGAGTAGCTATTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCGCCAATGA

mRNA sequence

ATGGAAGGCCAAGAGGTTGATAGCGAGATCTCGAATCAACTTATTGGTCTTATGGTATATCTCAGTATAGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTAATACCCGGAGTAGCTATTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCGCCAATGA

Coding sequence (CDS)

ATGGAAGGCCAAGAGGTTGATAGCGAGATCTCGAATCAACTTATTGGTCTTATGGTATATCTCAGTATAGAGGATGATACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTAATACCCGGAGTAGCTATTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCGCCAATGA

Protein sequence

MEGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTICMGLAASMGSFILVGGEITKRLAFPHARRQ

Homology

[Close]

BLAST of Lsi06G000410 vs. Swiss-Prot
Match: CLPP_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-43
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDV TIC
Sbjct: 36  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 96  MGLAASMGSFILVGGEITKRLAFPHAR 122

[Close]

BLAST of Lsi06G000410 vs. Swiss-Prot
Match: CLPP_DAUCA (ATP-dependent Clp protease proteolytic subunit OS=Daucus carota GN=clpP PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-43
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIE+DTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC
Sbjct: 36  GQEVDSEISNQLIGLMVYLSIENDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAASMGSFIL GGEITKRLAFPHAR
Sbjct: 96  MGLAASMGSFILAGGEITKRLAFPHAR 122

[Close]

BLAST of Lsi06G000410 vs. Swiss-Prot
Match: CLPP_NICTO (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=clpP PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-43
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIED+TKDLYLFINSPGGWVIPGVAIYDTMQFVRPDV TIC
Sbjct: 36  GQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 96  MGLAASMGSFILVGGEITKRLAFPHAR 122

[Close]

BLAST of Lsi06G000410 vs. Swiss-Prot
Match: CLPP_TOBAC (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-43
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIED+TKDLYLFINSPGGWVIPGVAIYDTMQFVRPDV TIC
Sbjct: 36  GQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 96  MGLAASMGSFILVGGEITKRLAFPHAR 122

[Close]

BLAST of Lsi06G000410 vs. Swiss-Prot
Match: CLPP_NICSY (ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-43
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIED+TKDLYLFINSPGGWVIPGVAIYDTMQFVRPDV TIC
Sbjct: 36  GQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 96  MGLAASMGSFILVGGEITKRLAFPHAR 122

[Close]

BLAST of Lsi06G000410 vs. TrEMBL
Match: X2F0D4_LAGSI (ATP-dependent Clp protease proteolytic subunit OS=Lagenaria siceraria GN=clpP PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC
Sbjct: 35  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARRQ 92
           MGLAASMGSFILVGGEITKRLAFPHARRQ
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHARRQ 123

[Close]

BLAST of Lsi06G000410 vs. TrEMBL
Match: A0A120L1B9_GYNPE (ATP-dependent Clp protease proteolytic subunit OS=Gynostemma pentaphyllum GN=clpP PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC
Sbjct: 35  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHAR 121

[Close]

BLAST of Lsi06G000410 vs. TrEMBL
Match: A0A0G2R8L5_MESCR (ATP-dependent Clp protease proteolytic subunit OS=Mesembryanthemum crystallinum GN=clpP PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDV TIC
Sbjct: 36  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARR 91
           MGLAASMGSFILVGGEITKRLAFPHARR
Sbjct: 96  MGLAASMGSFILVGGEITKRLAFPHARR 123

[Close]

BLAST of Lsi06G000410 vs. TrEMBL
Match: X2F3T1_LAGSI (ATP-dependent Clp protease proteolytic subunit OS=Lagenaria siceraria GN=clpP PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-42
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISN LIGLMVYLSIEDD KDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC
Sbjct: 35  GQEVDSEISNXLIGLMVYLSIEDDNKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARRQ 92
           MGLAASMGSFILVGGEITKRLAFPHARRQ
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHARRQ 123

[Close]

BLAST of Lsi06G000410 vs. TrEMBL
Match: A0A0S2M9W9_9ROSI (ATP-dependent Clp protease proteolytic subunit OS=Juglans regia GN=clpP PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.4e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFV PDVQTIC
Sbjct: 35  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVGPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARR 91
           MGLAASMGSFILVGGEITKRLAFPHARR
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHARR 122

[Close]

BLAST of Lsi06G000410 vs. TAIR10
Match: ATCG00670.1 (ATCG00670.1 plastid-encoded CLP P)

HSP 1 Score: 161.0 bits (406), Expect = 3.5e-40
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVD+EISNQLI LM+YLSIE DTKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTIC
Sbjct: 36  GQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAAS+ SFILVGG ITKR+AFPHAR
Sbjct: 96  MGLAASIASFILVGGAITKRIAFPHAR 122

[Close]

BLAST of Lsi06G000410 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 97.4 bits (241), Expect = 4.7e-21
Identity = 42/87 (48.28%), Postives = 64/87 (73.56%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           G  VD +++N ++  ++YL   D TKD+ +++NSPGG V  G+AI+DTM+ +RPDV T+C
Sbjct: 128 GGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVC 187

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           +GLAASMG+F+L  G   KR + P++R
Sbjct: 188 VGLAASMGAFLLSAGTKGKRYSLPNSR 214

[Close]

BLAST of Lsi06G000410 vs. TAIR10
Match: AT1G12410.1 (AT1G12410.1 CLP protease proteolytic subunit 2)

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-18
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQ +D E SNQ++  M+YL   DD++ +Y+++N PGG + P +AIYDTM+ ++  V T C
Sbjct: 103 GQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHC 162

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           +GLA ++  F+L  GE   R A P +R
Sbjct: 163 VGLAYNLAGFLLAAGEKGHRFAMPLSR 189

[Close]

BLAST of Lsi06G000410 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-17
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           G +VD   ++ +I  ++ L  ED  +D+ LFINSPGG +  G+ IYD M+  + DV T+C
Sbjct: 99  GSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVC 158

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           +GLAASMG+F+L  G   KR   P+++
Sbjct: 159 LGLAASMGAFLLASGSKGKRYCMPNSK 185

[Close]

BLAST of Lsi06G000410 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-16
Identity = 34/83 (40.96%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 6   VDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTICMGL 65
           ++ + S+ ++  ++YL  E+ +K +++++NSPGG V  G+AIYDTMQ++R  + TIC+G 
Sbjct: 65  INDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQ 124

Query: 66  AASMGSFILVGGEITKRLAFPHA 89
           AASM S +L  G   +R + P+A
Sbjct: 125 AASMASLLLAAGAKGQRRSLPNA 147

[Close]

BLAST of Lsi06G000410 vs. NCBI nr
Match: gi|595645220|gb|AHM88683.1| (clp protease proteolytic subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC
Sbjct: 35  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARRQ 92
           MGLAASMGSFILVGGEITKRLAFPHARRQ
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHARRQ 123

[Close]

BLAST of Lsi06G000410 vs. NCBI nr
Match: gi|1002166164|ref|YP_009236304.1| (clp protease proteolytic subunit (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC
Sbjct: 35  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHAR 90
           MGLAASMGSFILVGGEITKRLAFPHAR
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHAR 121

[Close]

BLAST of Lsi06G000410 vs. NCBI nr
Match: gi|982898186|ref|YP_009221832.1| (clp protease proteolytic subunit (chloroplast) [Mesembryanthemum crystallinum])

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDV TIC
Sbjct: 36  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVHTIC 95

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARR 91
           MGLAASMGSFILVGGEITKRLAFPHARR
Sbjct: 96  MGLAASMGSFILVGGEITKRLAFPHARR 123

[Close]

BLAST of Lsi06G000410 vs. NCBI nr
Match: gi|595645456|gb|AHM88915.1| (clp protease proteolytic subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 178.3 bits (451), Expect = 5.9e-42
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISN LIGLMVYLSIEDD KDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC
Sbjct: 35  GQEVDSEISNXLIGLMVYLSIEDDNKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARRQ 92
           MGLAASMGSFILVGGEITKRLAFPHARRQ
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHARRQ 123

[Close]

BLAST of Lsi06G000410 vs. NCBI nr
Match: gi|959125630|ref|YP_009186193.1| (ATP-dependent Clp protease proteolytic subunit (chloroplast) [Juglans regia])

HSP 1 Score: 177.9 bits (450), Expect = 7.8e-42
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 3   GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVRPDVQTIC 62
           GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFV PDVQTIC
Sbjct: 35  GQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGVAIYDTMQFVGPDVQTIC 94

Query: 63  MGLAASMGSFILVGGEITKRLAFPHARR 91
           MGLAASMGSFILVGGEITKRLAFPHARR
Sbjct: 95  MGLAASMGSFILVGGEITKRLAFPHARR 122

The following BLAST results are available for this feature:

BLAST of Lsi06G000410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP_SPIOL	1.1e-43	98.85	ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=clpP PE=3...	[more]
CLPP_DAUCA	3.1e-43	97.70	ATP-dependent Clp protease proteolytic subunit OS=Daucus carota GN=clpP PE=3 SV=...	[more]
CLPP_NICTO	3.1e-43	97.70	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tomentosiformis GN=c...	[more]
CLPP_TOBAC	3.1e-43	97.70	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2...	[more]
CLPP_NICSY	3.1e-43	97.70	ATP-dependent Clp protease proteolytic subunit OS=Nicotiana sylvestris GN=clpP P...	[more]

BLAST of Lsi06G000410 vs. TrEMBL


Match Name	E-value	Identity	Description
X2F0D4_LAGSI	2.2e-43	100.00	ATP-dependent Clp protease proteolytic subunit OS=Lagenaria siceraria GN=clpP PE...	[more]
A0A120L1B9_GYNPE	3.2e-42	100.00	ATP-dependent Clp protease proteolytic subunit OS=Gynostemma pentaphyllum GN=clp...	[more]
A0A0G2R8L5_MESCR	3.2e-42	98.86	ATP-dependent Clp protease proteolytic subunit OS=Mesembryanthemum crystallinum ...	[more]
X2F3T1_LAGSI	4.1e-42	97.75	ATP-dependent Clp protease proteolytic subunit OS=Lagenaria siceraria GN=clpP PE...	[more]
A0A0S2M9W9_9ROSI	5.4e-42	98.86	ATP-dependent Clp protease proteolytic subunit OS=Juglans regia GN=clpP PE=3 SV=...	[more]

BLAST of Lsi06G000410 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00670.1	3.5e-40	88.51	ATCG00670.1 plastid-encoded CLP P	[more]
AT1G02560.1	4.7e-21	48.28	nuclear encoded CLP protease 5	[more]
AT1G12410.1	6.3e-18	43.68	CLP protease proteolytic subunit 2	[more]
AT1G66670.1	2.4e-17	43.68	CLP protease proteolytic subunit 3	[more]
AT5G23140.1	3.5e-16	40.96	nuclear-encoded CLP protease P7	[more]

BLAST of Lsi06G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595645220\|gb\|AHM88683.1\|	3.1e-43	100.00	clp protease proteolytic subunit (chloroplast) [Lagenaria siceraria]	[more]
gi\|1002166164\|ref\|YP_009236304.1\|	4.5e-42	100.00	clp protease proteolytic subunit (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|982898186\|ref\|YP_009221832.1\|	4.5e-42	98.86	clp protease proteolytic subunit (chloroplast) [Mesembryanthemum crystallinum]	[more]
gi\|595645456\|gb\|AHM88915.1\|	5.9e-42	97.75	clp protease proteolytic subunit (chloroplast) [Lagenaria siceraria]	[more]
gi\|959125630\|ref\|YP_009186193.1\|	7.8e-42	98.86	ATP-dependent Clp protease proteolytic subunit (chloroplast) [Juglans regia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA
IPR018215	ClpP_Ser_AS
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000410.1	Lsi06G000410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 81..91 score: 5.5E-24coord: 29..49 score: 5.5E-24coord: 60..77 score: 5.5
IPR018215	ClpP, Ser active site	PROSITE	PS00381	CLP_PROTEASE_SER	coord: 60..71 scor
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 3..89 score: 1.8
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 3..89 score: 5.9
None	No IPR available	PANTHER	PTHR10381:SF19	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1	coord: 3..89 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000410	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000410	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000410	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000410	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000410	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000410	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000410	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000410	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000410	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000410	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000410	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000410	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000410	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000410	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000410	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000410	Watermelon (97103) v1	lsiwmB396
Lsi06G000410	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000410	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000410	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000410	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000410	Cucumber (Chinese Long) v3	cuclsiB086
Lsi06G000410	Watermelon (97103) v2	lsiwmbB365
Lsi06G000410	Wax gourd	lsiwgoB522