Lsi06G000400 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ATP-dependent Clp protease proteolytic subunit
Location	chr06 : 363460 .. 363724 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTGAGATAGAGAAAACCATTTATTAAATCATCAGGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACAAACGGGAGAATTTATCCTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCATCACAAGGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTGAATAA

mRNA sequence

ATGATGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACAAACGGGAGAATTTATCCTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCATCACAAGGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTGAATAA

Coding sequence (CDS)

ATGATGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACAAACGGGAGAATTTATCCTGGAAGCGGAAGAACTACTGAAGCTGCGCGAAACCATCACAAGGGTTTATGTACAAAGAACAGGCAAACCCTTATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTGAATAA

Protein sequence

MMVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSATEAQAHGIVDLVAVE

Homology

[Close]

BLAST of Lsi06G000400 vs. Swiss-Prot
Match: CLPP_EUCGG (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. globulus GN=clpP PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-34
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVA+E
Sbjct: 183 EAQAHGIVDLVAIE 196

[Close]

BLAST of Lsi06G000400 vs. Swiss-Prot
Match: CLPP_OLIPU (ATP-dependent Clp protease proteolytic subunit OS=Olimarabidopsis pumila GN=clpP PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.5e-34
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAV+
Sbjct: 183 EAQAHGIVDLVAVQ 196

[Close]

BLAST of Lsi06G000400 vs. Swiss-Prot
Match: CLPP_AETGR (ATP-dependent Clp protease proteolytic subunit OS=Aethionema grandiflorum GN=clpP PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.5e-34
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAV+
Sbjct: 183 EAQAHGIVDLVAVQ 196

[Close]

BLAST of Lsi06G000400 vs. Swiss-Prot
Match: CLPP_BARVE (ATP-dependent Clp protease proteolytic subunit OS=Barbarea verna GN=clpP PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.5e-34
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAV+
Sbjct: 183 EAQAHGIVDLVAVQ 196

[Close]

BLAST of Lsi06G000400 vs. Swiss-Prot
Match: CLPP_LOBMA (ATP-dependent Clp protease proteolytic subunit OS=Lobularia maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.5e-34
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAV+
Sbjct: 183 EAQAHGIVDLVAVQ 196

[Close]

BLAST of Lsi06G000400 vs. TrEMBL
Match: D3WEB5_HEUSA (ATP-dependent Clp protease proteolytic subunit OS=Heuchera sanguinea GN=clpP PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAVE
Sbjct: 183 EAQAHGIVDLVAVE 196

[Close]

BLAST of Lsi06G000400 vs. TrEMBL
Match: A0A0N7E515_9MAGN (ATP-dependent Clp protease proteolytic subunit OS=Heuchera parviflora var. saurensis GN=clpP PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAVE
Sbjct: 183 EAQAHGIVDLVAVE 196

[Close]

BLAST of Lsi06G000400 vs. TrEMBL
Match: A0A120L1B9_GYNPE (ATP-dependent Clp protease proteolytic subunit OS=Gynostemma pentaphyllum GN=clpP PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 122 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 181

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAVE
Sbjct: 182 EAQAHGIVDLVAVE 195

[Close]

BLAST of Lsi06G000400 vs. TrEMBL
Match: T1QPC6_EUCER (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus erythrocorys GN=clpP PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-32
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVA+E
Sbjct: 183 EAQAHGIVDLVAIE 196

[Close]

BLAST of Lsi06G000400 vs. TrEMBL
Match: T1QH83_EUCRA (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus radiata GN=clpP PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-32
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVA+E
Sbjct: 183 EAQAHGIVDLVAIE 196

[Close]

BLAST of Lsi06G000400 vs. TAIR10
Match: ATCG00670.1 (ATCG00670.1 plastid-encoded CLP P)

HSP 1 Score: 143.7 bits (361), Expect = 4.8e-35
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKP+WV+SEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPIWVISEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAV+
Sbjct: 183 EAQAHGIVDLVAVQ 196

[Close]

BLAST of Lsi06G000400 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 60.1 bits (144), Expect = 6.9e-10
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQP+   Y  Q  +  +  ++++++ + +  +YV+ TG+PL VV+ +M+RD FM+  
Sbjct: 149 VMIHQPSGG-YSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPE 208

Query: 63  EAQAHGIVDLVAVE 77
           EA+A GI+D V  E
Sbjct: 209 EAKAFGIIDEVIDE 221

[Close]

BLAST of Lsi06G000400 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 48.1 bits (113), Expect = 2.7e-06
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           +MIHQP       QT +  ++A E+L  +  +       TG+ L  +++D +RD FMSA 
Sbjct: 215 IMIHQPLGGAQGGQT-DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAK 274

Query: 63  EAQAHGIVD 72
           EA+ +G++D
Sbjct: 275 EAKEYGLID 282

[Close]

BLAST of Lsi06G000400 vs. NCBI nr
Match: gi|1002166164|ref|YP_009236304.1| (clp protease proteolytic subunit (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 122 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 181

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAVE
Sbjct: 182 EAQAHGIVDLVAVE 195

[Close]

BLAST of Lsi06G000400 vs. NCBI nr
Match: gi|290489466|gb|ADD31117.1| (clp protease proteolytic subunit protein (chloroplast) [Heuchera sanguinea])

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVAVE
Sbjct: 183 EAQAHGIVDLVAVE 196

[Close]

BLAST of Lsi06G000400 vs. NCBI nr
Match: gi|918021112|ref|YP_009163505.1| (clp protease proteolytic subunit (plastid) [Eugenia uniflora])

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-32
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 122 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 181

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVA+E
Sbjct: 182 EAQAHGIVDLVAIE 195

[Close]

BLAST of Lsi06G000400 vs. NCBI nr
Match: gi|545716528|ref|YP_008575393.1| (ATP-dependent Clp protease proteolytic subunit (chloroplast) [Eucalyptus verrucata])

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-32
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVA+E
Sbjct: 183 EAQAHGIVDLVAIE 196

[Close]

BLAST of Lsi06G000400 vs. NCBI nr
Match: gi|545718420|ref|YP_008577263.1| (ATP-dependent Clp protease proteolytic subunit (chloroplast) [Eucalyptus salmonophloia])

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-32
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 3   VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 62
           VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT
Sbjct: 123 VMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRTGKPLWVVSEDMERDVFMSAT 182

Query: 63  EAQAHGIVDLVAVE 77
           EAQAHGIVDLVA+E
Sbjct: 183 EAQAHGIVDLVAIE 196

The following BLAST results are available for this feature:

BLAST of Lsi06G000400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP_EUCGG	2.2e-34	98.65	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. glo...	[more]
CLPP_OLIPU	6.5e-34	97.30	ATP-dependent Clp protease proteolytic subunit OS=Olimarabidopsis pumila GN=clpP...	[more]
CLPP_AETGR	6.5e-34	97.30	ATP-dependent Clp protease proteolytic subunit OS=Aethionema grandiflorum GN=clp...	[more]
CLPP_BARVE	6.5e-34	97.30	ATP-dependent Clp protease proteolytic subunit OS=Barbarea verna GN=clpP PE=3 SV...	[more]
CLPP_LOBMA	6.5e-34	97.30	ATP-dependent Clp protease proteolytic subunit OS=Lobularia maritima GN=clpP PE=...	[more]

BLAST of Lsi06G000400 vs. TrEMBL


Match Name	E-value	Identity	Description
D3WEB5_HEUSA	1.9e-32	100.00	ATP-dependent Clp protease proteolytic subunit OS=Heuchera sanguinea GN=clpP PE=...	[more]
A0A0N7E515_9MAGN	1.9e-32	100.00	ATP-dependent Clp protease proteolytic subunit OS=Heuchera parviflora var. saure...	[more]
A0A120L1B9_GYNPE	1.9e-32	100.00	ATP-dependent Clp protease proteolytic subunit OS=Gynostemma pentaphyllum GN=clp...	[more]
T1QPC6_EUCER	2.5e-32	98.65	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus erythrocorys GN=clp...	[more]
T1QH83_EUCRA	2.5e-32	98.65	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus radiata GN=clpP PE=...	[more]

BLAST of Lsi06G000400 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00670.1	4.8e-35	95.95	ATCG00670.1 plastid-encoded CLP P	[more]
AT5G23140.1	6.9e-10	39.19	nuclear-encoded CLP protease P7	[more]
AT1G02560.1	2.7e-06	34.78	nuclear encoded CLP protease 5	[more]

BLAST of Lsi06G000400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1002166164\|ref\|YP_009236304.1\|	2.7e-32	100.00	clp protease proteolytic subunit (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|290489466\|gb\|ADD31117.1\|	2.7e-32	100.00	clp protease proteolytic subunit protein (chloroplast) [Heuchera sanguinea]	[more]
gi\|918021112\|ref\|YP_009163505.1\|	3.6e-32	98.65	clp protease proteolytic subunit (plastid) [Eugenia uniflora]	[more]
gi\|545716528\|ref\|YP_008575393.1\|	3.6e-32	98.65	ATP-dependent Clp protease proteolytic subunit (chloroplast) [Eucalyptus verruca...	[more]
gi\|545718420\|ref\|YP_008577263.1\|	3.6e-32	98.65	ATP-dependent Clp protease proteolytic subunit (chloroplast) [Eucalyptus salmono...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000400.1	Lsi06G000400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 3..76 score: 5.7
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 2..74 score: 7.5
None	No IPR available	PANTHER	PTHR10381:SF19	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1	coord: 3..76 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000400	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000400	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000400	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000400	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000400	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000400	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000400	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000400	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000400	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000400	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000400	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000400	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000400	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000400	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000400	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000400	Watermelon (97103) v1	lsiwmB396
Lsi06G000400	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000400	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000400	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000400	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000400	Cucumber (Chinese Long) v3	cuclsiB086
Lsi06G000400	Watermelon (97103) v2	lsiwmbB365
Lsi06G000400	Wax gourd	lsiwgoB522