Lsi06G000390 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	30S ribosomal protein S18, chloroplastic
Location	chr06 : 361401 .. 363518 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAGGCTTACTCTTTAATTGAATTAAAATTCTAATCCAAACTCAACCGCAGATTGATGCTTTGTTCGAAAAATCCGAAAATCTAGATTTGATTGTCGTGTCGTAAGAAAAAAAAAAGAATAGTGGAAGAAGAATAAATCGTTTTTTTATTGAACATATTTGCTCATTTTGACCACTTTATCATATTATCATATTTTATCATACTAATTTCTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAACTCCATTTTAAGCATTCCGCTGGATTCTTTCCAATTTTCTTATTTTATGATCTCATTGGAAATCATATAAAGACAATTTCTGTTTAATATAGCGATTTGGGCAAGTATTTTACGATTAAGAAGCAACTGCCTCTTGTACAGATTGTGTATGAATCTACTATAACTGTAGTCTACCTTATTAGATCGAATTACTGCATTTATTCGAGCGATCCACAACTGTCGAAAATTTCTTTTTTGCCTACCTCTATCCCGATAAGCTGAAGCCAAAGCTCTTATTTTCTGTTGAGTAATAGTTCGAGTAAGTCTTGAATGAGCCCCTCGAAAGCTTGATGCAAATAAACGAATTTTTGTTCTACGTCTCCGAGCTATATATCCTCGTTTAATTCTAGTCATTGAATAAATGAAACTTTGATGAATAACTAATTGATTTCCTTTCTTTCAGTTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACGTATTTTTCCAATGTATAAAATAAAAATTCCAATGGCTTTTGCTACTATAACCTTCCCGACCACGATTTCTTTTTTTGTTCTAGTCACCCCAAAATACGAAATTGTATTCATACTAGGTATCAAAAAAAACAAACATAGAGTAAATAAATCAAAATAGAAATGGATAAAGAAATAGTGGGTTCCTTCGTTTCTATGGTTACTTCTTAAACGGTGAGGTCCTCTCTATACACCGGAGCTCCTTCTTTTATTTCATCAATGTTATTGTTAACTTGTACAGTTCACCCTCTTTGGCTCTACCCATGAATTAGCTAGTAATCGGTCTTTCACAACGAGATCTACCTATACAGTAACGGTATTTAATTATGAAGATTAGTTGGGTAGCTGACCCTCTTAGTCCGTTCTTGGAAGAATAAGGCCATAATCCTTCTGTTAAATAGGATTTCCTCTGCTTAATGGATAAGCATTTGTTACCAATGGGGAATTCTTTCTCATCTAAAATTGAAAATTGAGATGATTGGATTTGCACCAATAGAAACCATAAATTTGATACACAATAAAAGGATACGATAAATCTTTTTTATTTAGTTTTAGGTAGTGAACGGAGTTCTTCCATTCATTCTATCCTATTCACTGGTACTTATCACTGATACGGGAAAAATTTTGTACTTTCTTTTGTCCCGGTCCATGGTCTAAACGAGTCGCACATACACCCTAGTACATGTTCCTCGACGCTGAGGGCATCCCCGAAGGGCGGGCGATTTGGTGACATTTCTGATTGGCTGTCTTGTGTTTCTAATAAGTTGTTTAATAGTTGGCATGTTGAATTGTATACATAATGAGTTGGTTTAGATCAATCCTAACCGTATGATTATGAATTACTTCTATATTCGATATTAATAATTAATAATAATTAATAGGATTAATAGTATAATAATTAATAGGATTAATAGTAATCGAAAATATTATATTAACCCCCGGTAAAAAGATAAAATCTCAAATTTCAGATTTTTGCGTGAAATCCCTGCGATTTTTTATTCAACCGCTACAAGATCAACAATTCCATGAGCTTGGGCTTCTGTTGCTGACATAA

mRNA sequence

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGATTTGATTGTCGTGTCCGATTTGGGCAAGTATTTTACGATTAAGAAGCAACTGCCTCTTGTACAGATTGTTAATAGTTCGATTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACGTATTTTTCCAATGTATAAAATAAAAATTCCAATGGCTTTTGCTACTATAACCTTCCCGACCACGATTTCTTTTTTTGTTCTAGTCACCCCAAAATACGAAATTGTATTCATACTAGGATTAATAGTAATCGAAAATATTATATTAACCCCCGGTAAAAAGATAAAATCTCAAATTTCAGATTTTTGCGTGAAATCCCTGCGATTTTTTATTCAACCGCTACAAGATCAACAATTCCATGAGCTTGGGCTTCTGTTGCTGACATAA

Coding sequence (CDS)

ATGGATAAATCCAAGCGACTCCTTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGATTTGATTGTCGTGTCCGATTTGGGCAAGTATTTTACGATTAAGAAGCAACTGCCTCTTGTACAGATTGTTAATAGTTCGATTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACGTATTTTTCCAATGTATAAAATAAAAATTCCAATGGCTTTTGCTACTATAACCTTCCCGACCACGATTTCTTTTTTTGTTCTAGTCACCCCAAAATACGAAATTGTATTCATACTAGGATTAATAGTAATCGAAAATATTATATTAACCCCCGGTAAAAAGATAAAATCTCAAATTTCAGATTTTTGCGTGAAATCCCTGCGATTTTTTATTCAACCGCTACAAGATCAACAATTCCATGAGCTTGGGCTTCTGTTGCTGACATAA

Protein sequence

MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTARTIDLIVVSDLGKYFTIKKQLPLVQIVNSSIIPFSLPSLLITKRIFPMYKIKIPMAFATITFPTTISFFVLVTPKYEIVFILGLIVIENIILTPGKKIKSQISDFCVKSLRFFIQPLQDQQFHELGLLLLT

Homology

[Close]

BLAST of Lsi06G000390 vs. Swiss-Prot
Match: RR18_GOSBA (30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense GN=rps18 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-41
Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSEST RT  L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTTRTTAL 96

[Close]

BLAST of Lsi06G000390 vs. Swiss-Prot
Match: RR18_MORIN (30S ribosomal protein S18, chloroplastic OS=Morus indica GN=rps18 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.2e-41
Identity = 91/96 (94.79%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARIL LLPFLNNEKQFERSEST RT  L
Sbjct: 61 LITIAIKQARILCLLPFLNNEKQFERSESTPRTTGL 96

[Close]

BLAST of Lsi06G000390 vs. Swiss-Prot
Match: RR18_GOSHI (30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum GN=rps18 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.4e-41
Identity = 91/96 (94.79%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILS LPFLNNEKQFERSEST RT  L
Sbjct: 61 LITIAIKQARILSSLPFLNNEKQFERSESTTRTTAL 96

[Close]

BLAST of Lsi06G000390 vs. Swiss-Prot
Match: RR18_PANGI (30S ribosomal protein S18, chloroplastic OS=Panax ginseng GN=rps18 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-40
Identity = 90/96 (93.75%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNN+KQFER+ESTART  L
Sbjct: 61 LITIAIKQARILSLLPFLNNDKQFERTESTARTAGL 96

[Close]

BLAST of Lsi06G000390 vs. Swiss-Prot
Match: RR18_DAUCA (30S ribosomal protein S18, chloroplastic OS=Daucus carota GN=rps18 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFER+EST RT  L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERTESTTRTAGL 96

[Close]

BLAST of Lsi06G000390 vs. TrEMBL
Match: X2F1R4_LAGSI (30S ribosomal protein S18, chloroplastic OS=Lagenaria siceraria GN=rps18 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.0e-41
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. TrEMBL
Match: E5KUB8_CORLA (30S ribosomal protein S18, chloroplastic OS=Corynocarpus laevigatus GN=rps18 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.5e-40
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. TrEMBL
Match: A0A120L1C7_GYNPE (30S ribosomal protein S18, chloroplastic OS=Gynostemma pentaphyllum GN=rps18 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.2e-40
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPI+SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIESGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. TrEMBL
Match: G3ETR9_CUCME (30S ribosomal protein S18, chloroplastic OS=Cucumis melo subsp. melo GN=rps18 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.2e-40
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPI SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIPSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. TrEMBL
Match: A0A0N7BUU6_9ROSA (30S ribosomal protein S18, chloroplastic OS=Elaeagnus macrophylla GN=rps18 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSEST RT  L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTTRTTGL 96

[Close]

BLAST of Lsi06G000390 vs. TAIR10
Match: ATCG00650.1 (ATCG00650.1 ribosomal protein S18)

HSP 1 Score: 164.9 bits (416), Expect = 5.8e-41
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          M+KSKRL  KSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNR+TLKQQR
Sbjct: 1  MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNN+KQFERSEST RT  L
Sbjct: 61 LITIAIKQARILSLLPFLNNQKQFERSESTPRTTSL 96

[Close]

BLAST of Lsi06G000390 vs. NCBI nr
Match: gi|595645253|gb|AHM88716.1| (ribosomal protein S18 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 176.0 bits (445), Expect = 7.2e-41
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. NCBI nr
Match: gi|317046195|ref|YP_004072484.1| (ribosomal protein S18 [Corynocarpus laevigata])

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. NCBI nr
Match: gi|1002166204|ref|YP_009236302.1| (ribosomal protein S18 (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 173.3 bits (438), Expect = 4.7e-40
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPI+SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIESGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. NCBI nr
Match: gi|346578213|ref|YP_004841805.1| (ribosomal protein S18 [Cucumis melo subsp. melo])

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPI SGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIPSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSESTARTI L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIGL 96

[Close]

BLAST of Lsi06G000390 vs. NCBI nr
Match: gi|938339467|ref|YP_009171621.1| (ribosomal protein S18 (chloroplast) [Elaeagnus macrophylla])

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LITIAIKQARILSLLPFLNNEKQFERSESTARTIDL 97
          LITIAIKQARILSLLPFLNNEKQFERSEST RT  L
Sbjct: 61 LITIAIKQARILSLLPFLNNEKQFERSESTTRTTGL 96

The following BLAST results are available for this feature:

BLAST of Lsi06G000390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR18_GOSBA	1.9e-41	95.83	30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense GN=rps18 PE=3 S...	[more]
RR18_MORIN	7.2e-41	94.79	30S ribosomal protein S18, chloroplastic OS=Morus indica GN=rps18 PE=3 SV=1	[more]
RR18_GOSHI	9.4e-41	94.79	30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum GN=rps18 PE=3 SV=...	[more]
RR18_PANGI	1.6e-40	93.75	30S ribosomal protein S18, chloroplastic OS=Panax ginseng GN=rps18 PE=3 SV=1	[more]
RR18_DAUCA	2.1e-40	93.75	30S ribosomal protein S18, chloroplastic OS=Daucus carota GN=rps18 PE=3 SV=1	[more]

BLAST of Lsi06G000390 vs. TrEMBL


Match Name	E-value	Identity	Description
X2F1R4_LAGSI	5.0e-41	98.96	30S ribosomal protein S18, chloroplastic OS=Lagenaria siceraria GN=rps18 PE=3 SV...	[more]
E5KUB8_CORLA	1.5e-40	97.92	30S ribosomal protein S18, chloroplastic OS=Corynocarpus laevigatus GN=rps18 PE=...	[more]
A0A120L1C7_GYNPE	3.2e-40	96.88	30S ribosomal protein S18, chloroplastic OS=Gynostemma pentaphyllum GN=rps18 PE=...	[more]
G3ETR9_CUCME	7.2e-40	96.88	30S ribosomal protein S18, chloroplastic OS=Cucumis melo subsp. melo GN=rps18 PE...	[more]
A0A0N7BUU6_9ROSA	1.6e-39	95.83	30S ribosomal protein S18, chloroplastic OS=Elaeagnus macrophylla GN=rps18 PE=3 ...	[more]

BLAST of Lsi06G000390 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00650.1	5.8e-41	91.67	ATCG00650.1 ribosomal protein S18	[more]

BLAST of Lsi06G000390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595645253\|gb\|AHM88716.1\|	7.2e-41	98.96	ribosomal protein S18 (chloroplast) [Lagenaria siceraria]	[more]
gi\|317046195\|ref\|YP_004072484.1\|	2.1e-40	97.92	ribosomal protein S18 [Corynocarpus laevigata]	[more]
gi\|1002166204\|ref\|YP_009236302.1\|	4.7e-40	96.88	ribosomal protein S18 (chloroplast) [Gynostemma pentaphyllum]	[more]
gi\|346578213\|ref\|YP_004841805.1\|	1.0e-39	96.88	ribosomal protein S18 [Cucumis melo subsp. melo]	[more]
gi\|938339467\|ref\|YP_009171621.1\|	2.3e-39	95.83	ribosomal protein S18 (chloroplast) [Elaeagnus macrophylla]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018275	Ribosomal_S18_CS
IPR001648	Ribosomal_S18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000390.1	Lsi06G000390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRODOM	PD002239		coord: 28..79 score: 9.0
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 35..45 score: 7.3E-19coord: 53..67 score: 7.3E-19coord: 45..52 score: 7.3E-19coord: 67..77 score: 7.3
IPR001648	Ribosomal protein S18	GENE3D	G3DSA:4.10.640.10		coord: 2..82 score: 2.0
IPR001648	Ribosomal protein S18	HAMAP	MF_00270	Ribosomal_S18	coord: 12..80 score: 1
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 26..75 score: 3.0
IPR001648	Ribosomal protein S18	TIGRFAMs	TIGR00165	TIGR00165	coord: 23..79 score: 1.5
IPR001648	Ribosomal protein S18	unknown	SSF46911	Ribosomal protein S18	coord: 17..81 score: 1.12
IPR018275	Ribosomal protein S18, conserved site	PROSITE	PS00057	RIBOSOMAL_S18	coord: 28..51 scor
None	No IPR available	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 16..108 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000390	Watermelon (97103) v2	lsiwmbB365
Lsi06G000390	Wax gourd	lsiwgoB522
Lsi06G000390	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000390	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000390	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000390	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000390	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000390	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000390	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000390	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000390	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000390	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000390	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000390	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000390	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000390	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000390	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000390	Watermelon (97103) v1	lsiwmB396
Lsi06G000390	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000390	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000390	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000390	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000390	Cucumber (Chinese Long) v3	cuclsiB086