Lsi06G000380 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NADH-quinone oxidoreductase subunit L
Location	chr06 : 356730 .. 358259 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGTCTTGGACTATCAATAATGATTTTTCTTTAGAGTTGGGCTACTTGATCGATCCACTTACGTGTATTATGTCAATATTAATCACGACTGTTGGAATTATGGTTCTTATTTATAGTGACAATTATATGTCTCATGATCAAGGATATTTGAGATTTTTTGCGTATATGAGTTTGTTCAATACGTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATCCAAATTTATATTTTTTGGGAATTGGTTGGAATGTGTTCTTATCTATTAATAGGTTTTTGGTTCACTCGACCTACTGCGGCGAATGCTTGTCAAAAGGCATTTGTAACTAATCGCGTAGGGGATTTTGGTTTATTATTAGGGATTTTAGGTCTTTATTGGACAACGGGGAGTTTTGAATTTCGGGATTTATTTAAAATATTCAATAACTTGATTGATAATAATGAGGTGAATTTATTATTTGTTACTTTGTGCGCCGTCCTATTATTTGCAGGTGCGGTTGCTAAATCGGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGGTAGCAGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCATGAATCTAATAGCTTTGATAGGTATAATAACAGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGATATTAAGAGAGGGTTAGCCTATTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATGGGGTCTTATCGGGCTGCTTTATTTCATTTGATTACTCATGCTTATTCAAAAGCGTTGTTGTTTTTAGGATCTGGGTCCATTATTCACTCAATGGAATCCGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGTGGTTTAACAAAGCATGTGCCAATTACAAAAAATGCTTTTTTATTAGGTACCCTTTCCCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCGCATCTACTTACTTACTTTTGATGGACATTTAAACCTTTATTGTAAAAACTACAGTGGAAAAACAAATAACTCCCTTTATTCAATATCATTATGGGGTAAAGAAGGATCAAAAATCATTCAAAAAAACTTTCGTTTCTTATCATTATTAAGAATGAATAATAATGAAAGGTCTTCTTTTTTGGTGAAAAAAACAACATATCAAATTGATAGTAATGTAACAAAAATTATGCGCCCTTTTGTTACTATTCCCCATTTTGGTACTAAAAAGACTTTTTCGTATCCCTATGAATCAGATAATACTATGCTATTTCCCATGTTTGTGTTATCCCTATTTACTTTGTTTGTTGGAGTCATAGGAATTCCGTTCACTCAATTCAATCAAGAAGCAATTGATTTGA

mRNA sequence

ATGTATGGTTTTTGGTTCACTCGACCTACTGCGGCGAATGCTTGTCAAAAGGCATTTGTAACTAATCGCGTAGGGGATTTTGGTGCGGTTGCTAAATCGGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGGTAGCAGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCATGAATCTAATAGCTTTGATAGGATCTGGGTCCATTATTCACTCAATGGAATCCGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGAATTCCGTTCACTCAATTCAATCAAGAAGCAATTGATTTGA

Coding sequence (CDS)

ATGTATGGTTTTTGGTTCACTCGACCTACTGCGGCGAATGCTTGTCAAAAGGCATTTGTAACTAATCGCGTAGGGGATTTTGGTGCGGTTGCTAAATCGGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGGTAGCAGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCATGAATCTAATAGCTTTGATAGGATCTGGGTCCATTATTCACTCAATGGAATCCGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGAATTCCGTTCACTCAATTCAATCAAGAAGCAATTGATTTGA

Protein sequence

MYGFWFTRPTAANACQKAFVTNRVGDFGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIALIGSGSIIHSMESVVGYSPDKSQNMEFRSLNSIKKQLI

Homology

[Close]

BLAST of Lsi06G000380 vs. Swiss-Prot
Match: NU5C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=ndhF PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-35
Identity = 87/138 (63.04%), Postives = 88/138 (63.77%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFQIFNNLIDNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 91
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNFLFLTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. Swiss-Prot
Match: NU5C_OENPA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera parviflora GN=ndhF PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-35
Identity = 99/222 (44.59%), Postives = 106/222 (47.75%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRP AA ACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPIAATACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIVNNLIDNNN 220

Query: 61  ----------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR 113
                           GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR
Sbjct: 221 QVHFLFVTLCSFLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR 280

[Close]

BLAST of Lsi06G000380 vs. Swiss-Prot
Match: NU5C_OENGL (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera glazioviana GN=ndhF PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-35
Identity = 99/222 (44.59%), Postives = 106/222 (47.75%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRP AA ACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPIAATACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIVNNLIDNNN 220

Query: 61  ----------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR 113
                           GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR
Sbjct: 221 QVHFLFVTLCSFLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR 280

[Close]

BLAST of Lsi06G000380 vs. Swiss-Prot
Match: NU5C_OENAR (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera argillicola GN=ndhF PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-35
Identity = 99/222 (44.59%), Postives = 106/222 (47.75%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRP AA ACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPIAATACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIVNNLIDNNN 220

Query: 61  ----------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR 113
                           GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR
Sbjct: 221 QVHFLFVTLCSFLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR 280

[Close]

BLAST of Lsi06G000380 vs. Swiss-Prot
Match: NU5C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Liriodendron tulipifera GN=ndhF PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-35
Identity = 99/221 (44.80%), Postives = 106/221 (47.96%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRP AANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGFYWITGSLEFRDLFEIFNNLIHTNG 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNSLFATLCAFLLFVGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. TrEMBL
Match: A9XUM6_9ROSI (NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Coriaria nepalensis GN=ndhF PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.9e-36
Identity = 105/221 (47.51%), Postives = 109/221 (49.32%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 139 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFLDLFKIFNNLISNNE 198

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 199 VNFLFVSLCAFLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 258

[Close]

BLAST of Lsi06G000380 vs. TrEMBL
Match: A0A0S2IE97_9ROSI (NdhF OS=Cucurbita argyrosperma subsp. sororia GN=ndhF PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLIYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. TrEMBL
Match: A0A0S2IE76_9ROSI (NdhF OS=Cucurbita argyrosperma GN=ndhF PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLIYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. TrEMBL
Match: A0A0S2IFN2_9ROSI (NdhF OS=Cucurbita okeechobeensis GN=ndhF PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLMYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. TrEMBL
Match: A0A0S2IG09_9ROSI (NdhF OS=Cucurbita okeechobeensis subsp. martinezii GN=ndhF PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLIYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. TAIR10
Match: ATCG01010.1 (ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein)

HSP 1 Score: 138.7 bits (348), Expect = 2.5e-33
Identity = 81/138 (58.70%), Postives = 85/138 (61.59%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDFGA------------------------------- 60
           + GFWFTRP AANACQKAFVTNRVGDFG                                
Sbjct: 161 LIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFQDLFEIFNNLILNNR 220

Query: 61  -----------------VAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 91
                            +AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFLTLCAFLLFVGPIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. TAIR10
Match: ATMG00060.1 (ATMG00060.1 NADH dehydrogenase subunit 5C)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1


Query: 28  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIA 87
           GAV KSAQ   H W PDAMEGPTP+SA IHAATMV AG+F++AR  PLF   P  + +I 
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTALIVIT 287

Query: 88  LIG---------SGSIIHSMESVVGYS 106
             G         +G + + ++ V+ YS
Sbjct: 288 SAGATTSFLAATTGILQNDLKRVIAYS 314

[Close]

BLAST of Lsi06G000380 vs. TAIR10
Match: ATMG00513.1 (ATMG00513.1 NADH dehydrogenase 5A)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1


Query: 28  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIA 87
           GAV KSAQ   H W PDAMEGPTP+SA IHAATMV AG+F++AR  PLF   P  + +I 
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTALIVIT 287

Query: 88  LIG---------SGSIIHSMESVVGYS 106
             G         +G + + ++ V+ YS
Sbjct: 288 SAGATTSFLAATTGILQNDLKRVIAYS 314

[Close]

BLAST of Lsi06G000380 vs. TAIR10
Match: ATMG00665.1 (ATMG00665.1 NADH dehydrogenase 5B)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1


Query: 28  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIA 87
           GAV KSAQ   H W PDAMEGPTP+SA IHAATMV AG+F++AR  PLF   P  + +I 
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTALIVIT 287

Query: 88  LIG---------SGSIIHSMESVVGYS 106
             G         +G + + ++ V+ YS
Sbjct: 288 SAGATTSFLAATTGILQNDLKRVIAYS 314

[Close]

BLAST of Lsi06G000380 vs. NCBI nr
Match: gi|157689260|gb|ABV65186.1| (NADH-plastoquinone oxidoreductase subunit 5, partial (chloroplast) [Coriaria nepalensis])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 105/221 (47.51%), Postives = 109/221 (49.32%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 139 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFLDLFKIFNNLISNNE 198

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 199 VNFLFVSLCAFLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 258

[Close]

BLAST of Lsi06G000380 vs. NCBI nr
Match: gi|952954766|gb|ALO22124.1| (NdhF (plastid) [Cucurbita ficifolia])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLIYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. NCBI nr
Match: gi|952954818|gb|ALO22175.1| (NdhF (plastid) [Cucurbita foetidissima])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLIYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. NCBI nr
Match: gi|952955069|gb|ALO22422.1| (NdhF (plastid) [Cucurbita okeechobeensis])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLMYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

[Close]

BLAST of Lsi06G000380 vs. NCBI nr
Match: gi|952955445|gb|ALO22793.1| (NdhF (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-35
Identity = 105/221 (47.51%), Postives = 108/221 (48.87%), Query Frame = 1


Query: 1   MYGFWFTRPTAANACQKAFVTNRVGDF--------------------------------- 60
           + GFWFTRPTAANACQKAFVTNRVGDF                                 
Sbjct: 161 LIGFWFTRPTAANACQKAFVTNRVGDFGLLLGILGLYWTTGSFEFRDLFKIFNNLIYNNE 220

Query: 61  ---------------GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 113
                          GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL
Sbjct: 221 VNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 280

The following BLAST results are available for this feature:

BLAST of Lsi06G000380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU5C_CUCSA	1.5e-35	63.04	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=nd...	[more]
NU5C_OENPA	2.5e-35	44.59	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera parviflora ...	[more]
NU5C_OENGL	2.5e-35	44.59	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera glazioviana...	[more]
NU5C_OENAR	2.5e-35	44.59	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera argillicola...	[more]
NU5C_LIRTU	2.5e-35	44.80	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Liriodendron tulipife...	[more]

BLAST of Lsi06G000380 vs. TrEMBL


Match Name	E-value	Identity	Description
A9XUM6_9ROSI	7.9e-36	47.51	NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Coriaria nepalensis GN...	[more]
A0A0S2IE97_9ROSI	1.4e-35	47.51	NdhF OS=Cucurbita argyrosperma subsp. sororia GN=ndhF PE=3 SV=1	[more]
A0A0S2IE76_9ROSI	1.4e-35	47.51	NdhF OS=Cucurbita argyrosperma GN=ndhF PE=3 SV=1	[more]
A0A0S2IFN2_9ROSI	1.4e-35	47.51	NdhF OS=Cucurbita okeechobeensis GN=ndhF PE=3 SV=1	[more]
A0A0S2IG09_9ROSI	1.4e-35	47.51	NdhF OS=Cucurbita okeechobeensis subsp. martinezii GN=ndhF PE=3 SV=1	[more]

BLAST of Lsi06G000380 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01010.1	2.5e-33	58.70	ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein	[more]
ATMG00060.1	1.3e-13	48.28	ATMG00060.1 NADH dehydrogenase subunit 5C	[more]
ATMG00513.1	1.3e-13	48.28	ATMG00513.1 NADH dehydrogenase 5A	[more]
ATMG00665.1	1.3e-13	48.28	ATMG00665.1 NADH dehydrogenase 5B	[more]

BLAST of Lsi06G000380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|157689260\|gb\|ABV65186.1\|	1.1e-35	47.51	NADH-plastoquinone oxidoreductase subunit 5, partial (chloroplast) [Coriaria nep...	[more]
gi\|952954766\|gb\|ALO22124.1\|	1.9e-35	47.51	NdhF (plastid) [Cucurbita ficifolia]	[more]
gi\|952954818\|gb\|ALO22175.1\|	1.9e-35	47.51	NdhF (plastid) [Cucurbita foetidissima]	[more]
gi\|952955069\|gb\|ALO22422.1\|	1.9e-35	47.51	NdhF (plastid) [Cucurbita okeechobeensis]	[more]
gi\|952955445\|gb\|ALO22793.1\|	1.9e-35	47.51	NdhF (plastid) [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001750	ND/Mrp_mem

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0070469	respiratory chain
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000380.1	Lsi06G000380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 28..95 score: 1.5
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 3..90 score: 7.7
None	No IPR available	PANTHER	PTHR22773:SF82	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 5, CHLOROPLASTIC	coord: 3..90 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000380	CmaCh11G012130	Cucurbita maxima (Rimu)	cmalsiB142

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000380	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000380	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000380	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000380	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000380	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000380	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000380	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000380	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000380	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000380	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000380	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000380	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000380	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000380	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000380	Watermelon (97103) v1	lsiwmB396
Lsi06G000380	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000380	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000380	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000380	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000380	Cucumber (Chinese Long) v3	cuclsiB086
Lsi06G000380	Watermelon (97103) v2	lsiwmbB365
Lsi06G000380	Wax gourd	lsiwgoB522