Lsi06G000370 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein TIC 214
Location	chr06 : 355529 .. 363197 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCAAATCGCCCGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATGTACTAGGGTGTATGTGCGACTCGTTTAGACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGAATAGGATAGAATGAATGGAAGAACTCCGTTCACTACCTAAAACTAAATAAAAAAGATTTATCGTATCCTTTTATTGTGTATCAAATTTATGGTTTCTATTGGTGCAAATCCAATCATCTCAATTTTCAATTTTAGATGAGAAAGAATTCCCCATTGGTAACAAATGCTTATCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGGTCAGCTACCCAACTAATCTTCATAATTAAATACCGTTACTGTATAGGTAGATCTCGTTGTGAAAGACCGATTACTAGCTAATTCATGGGTAGAGCCAAAGAGGGTGAACTGTACAAGTTAACAATAACATTGATGAAATAAAAGAAGGAGCTCCGGTGTATAGAGAGGACCTCACCGTTTAAGAAGTAACCATAGAAACGAAGGAACCCACTATTTCTTTATCCATTTCTATTTTGATTTATTTACTCTATGTTTGTTTTTTTTGATACCTAGTATGAATACAATTTCGTATTTTGGGGTGACTAGAACAAAAAAAGAAATCGTGGTCGGGAAGGTTATAGTAGCAAAAGCCATTGGAATTTTTATTTTATACATTGGAAAAATACGTTTTGTTATTAATAGACTAGGCAAGGAGAAAGGAATAACTGAAAGAAAGGAAATCAATTAGTTATTCATCAAAGTTTCATTTATTCAATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAACAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAAGAAAATTGGAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAATGAACTCCGAGAAGGTAGAGTAGAAATTAGTATGATAAAATATGATAATATGATAAAGTGGTCAAAATGAGCAAATATGTTCAATAAAAAAACGATTTATTCTTCTTCCACTATTCTTTTTTTTTTCTTACGACACGACAATCAAATCTAGATTTTCGGATTTTTCGAACAAAGCATCAATCTGCGGTTGAGTTTGGATTAGAATTTTAATTCAATTAAAGAGTAAGCCTATTTATTCCTGGTTCTAAGACCAATAGTTCTAGCGGTCGACTCGCTTCTTTCAAATTGTTTCTCATTATTAAGAAAAGGTAACAAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAAGCGTTGCTGTTTTAAGGTCAATCTATTTACCCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTCTATAATCAATTCGATCCCCCGATTGAATCGGGGGCAAACGCCTACGAAAAGATCGTTTGGATTTAAGAAGGAGTCGCTTGGATTTATCCATGGTTTGTTTATTCCTTATCCCGAAAATCCTATTTCGATCGGATCTAAAATGATTTAGAATTAAGAAATAGGATTTGGTTTGTTTATATTGAAATCTAAAATATGTCTAATATATGTAATTTTTCATCTTCCTTGGATTGGAAAAGGGTGACACACAGACGATCGGTTCGATCTATTTCTTTATCTCCCCATGAATCGTATGTTTGTAACAACGGGGACAGAATTTTCTCAATTCCAATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATCCCGATTGATTCCTTATTAACACCGTTTCGAACACAATGAGTACATTCCAAAATAACTGTTACTCGGGCATCTTTACCCTTGGCCATGAACCTCCCTTGGATTTTTGATTCACGCAACTCTTCCATTTTCCGATCCAAAATGAAGAAAAAAAGAGAAGTTGGTAACTCGAAATAAAATTATGAAAGATTTCGTTACAATCAAATATAAAATATAGTAATACAATGATTTCTAAATTTAGAATCGCAGTACAGTTTTTCATTTAAGTATCTTGTATTATATTGTTGCCCTAGCCATCACATTTTCGTTCTCACTCTTTTATTAATTCCATTTGAACCCGGCGCCGAGTCCGAGTTTGACTGAGGTTGAATCCATTTTGATTCTTTCTCTTTTCTAACTTATTCTAAGTCTAAAAACTCTAAAAAAAAGAAGGGGAAGGGGATTAGTCATAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAGTCAATAACTAGAATGAAAAAAATGGGAATACCAACGCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAAAGCCCCGAACCATATAGTACTTACTACCGGTGCCACGGAGAGATATGTTTTTAGATCTCGCATTTAAAACCCTCCTACTTTAGAGTAATTTGTAATACATAATGGTATTACATACCATCAAATGTATATATAGTTAATAACCGCTTGTATTGTCCGCGGAATTCCTAATTCAAATTGAAATGTACAACAGTTCAATTCGGTAGATATTCCCTTTTTTATTAAAAAAAAANCCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGTAAATTAGGTCTCAGAGAATTCAATTCCCGTTCTCAACCCATGACCAATATGAGCTCGAGGTTTCCTTCGTAACTCCCGGAACTTCTTCGTAGTGGCTCCGTTCCATGCCTCATTTCATAGAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATGCCAATTCCATTCATTTAATATCCCTGTGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATCTGTTTCTATTTCTATATATATGGAAAGTTAAAAAATCATCATATAATAATCCACAAATTGCAATAGAAAAGAAAAAGGGAGGTTTGTGATGATTTTAAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAATTCTATTAGATCTAATGTACTTATTAGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAGGAAAGGGGGGAAAGCGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAATATAAAAAGACCAGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTCGAAGTTAGAAATAGATAAAAAAGAAAAATCTCTCTTCTGGTTTGAAAAACCTCTTGTGACTATTCTTTTCGACTATAAACGATGGAATCGTCCATTTCGATATATAAAAAATGATAAATTTGAAAATGCTGTTAGAAAAAAACAAAGTAAATTAATAATATAAAAATAAATAAATAAGCTAAATACCAAAAGATATAAGACGAGATTCGACCACCTCCTACATATTTAATACTTTCTGCTACAAAAAAATTAAGAATACCCACCGCATTGGTAATTCCATCAATTACCCGTCGATCAAAAAAATAAGTTAATTCAGCTAATCCTCGTATACCCCCAATTAAGGATATTCTATAAAAAGCATCTATGTAACCCCGATTATATGACCAATTATATATTATATTTATAATTTTTTCAAAAAACAAATTATTAGTAAAACTTTTAACAAATGAATTACGAAAATTCAAATTTTGTAAAGATGAATAAGTGGGCTTATAGAAGAAAGACGCTATAACTATTCCGAAAGAAGCTATACTCACAGAAAAAGTTGCATTTTTAACAAATTCATACCAATTTTCAGAATCTTTTGAACTTTCATGTAACAAGTTTATAGACGGAGTTAACCATTTGTCTAATATATTCAAATCAATTGCTTCTTGATTGAATTGAGTGAACGGAATTCCTATGACTCCAACAAACAAAGTAAATAGGGATAACACAAACATGGGAAATAGCATAGTATTATCTGATTCATAGGGATACGAAAAAGTCTTTTTAGTACCAAAATGGGGAATAGTAACAAAAGGGCGCATAATTTTTGTTACATTACTATCAATTTGATATGTTGTTTTTTTCACCAAAAAAGAAGACCTTTCATTATTATTCATTCTTAATAATGATAAGAAACGAAAGTTTTTTTGAATGATTTTTGATCCTTCTTTACCCCATAATGATATTGAATAAAGGGAGTTATTTGTTTTTCCACTGTAGTTTTTACAATAAAGGTTTAAATGTCCATCAAAAGTAAGTAAGTAGATGCGAAACATATAAAATGCTGTTAATCCTGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGGGAAAGGGTACCTAATAAAAAAGCATTTTTTGTAATTGGCACATGCTTTGTTAAACCACCCATAAGAACCATATTCTGACTTTTATCTGGAGAATATCCAACAACGGATTCCATTGAGTGAATAATGGACCCAGATCCTAAAAACAACAACGCTTTTGAATAAGCATGAGTAATCAAATGAAATAAAGCAGCCCGATAAGACCCCATACCCAAAGCTAACATCATATAACCCAATTGAGACATTGTAGAATAGGCTAACCCTCTCTTAATATCTTTTTGAGCAAGAGCTAAAGTAGCTCCAAATAGTACTGTTATTATACCTATCAAAGCTATTAGATTCATGATGTAAGGTATTACTATAAAAAGCGGAAGAAGCCGAGCGACAAGAAAAATTCCCGCTGCTACCATCGTAGCAGCATGTATAAGAGCCGAAATGGGGGTAGGACCCTCCATAGCATCAGGTAACCATACATGAAGAGGAAATTGAGCCGATTTAGCAACCGCACCTGCAAATAATAGGACGGCGCACAAAGTAACAAATAATAAATTCACCTCATTATTATCAATCAAGTTATTGAATATTTTAAATAAATCCCGAAATTCAAAACTCCCCGTTGTCCAATAAAGACCTAAAATCCCTAATAATAAACCAAAATCCCCTACGCGATTAGTTACAAATGCCTTTTGACAAGCATTCGCCGCAGTAGGTCGAGTGAACCAAAAACCTATTAATAGATAAGAACACATTCCAACCAATTCCCAAAAAATATAAATTTGGATCAAATTCGAACTAGTAACTAATCCCAACATTGACGTATTGAACAAACTCATATACGCAAAAAATCTCAAATATCCTTGATCATGAGACATATAATTGTCACTATAAATAAGAACCATAATTCCAACAGTCGTGATTAATATTGACATAATACACGTAAGTGGATCGATCAAGTAGCCCAACTCTAAAGAAAAATCATTATTGATAGTCCAAGACCATACATATTGATAGATATAACTACTATTTATTTGATCAATAGACAGATAAACTGAAAAAATCATAACTATACTTAACAATAAAATACTCGGAAAAGACCACATACGTCGAAGGTTTTTGGTTGCCGTCGGAAAAAGTAGAAGTCCCACTCCTATTAAGATAGGAATTGGAAGTGAGATGAACGGTATGATCCATGAATATTGATACGTATATTCCATAAAAAAAGTATATTGAATTCCTAATTAATTTTTCTGATTCACCAGCTCTTATCTCTTTTCAAAAGGATCAGTTAATAAAAAATTTAAATATCCAAAACTTAAATAGAATTTTCTTTTTCTATTCTTAATTTTTTGCCAAATACTTCAAATATTTCAAGTCACGAAGTTACAATTGTTCAAATAAGATGATCCACTGAAACTATTAATGAACACACCCATTTCTTTTAATCAAAATTTTTTGACAATATAGAAACTGCAAATTTTCTTTATTATTATTATTTAGTATGCATTACAAAAATTTCCCGCTCTAGAGCAAGAAAGAAAAATTAGACGAAAAACACTATTTTTGTTTGGTATCAATCATAAAAGACAGTCTACAGGTTGATCCAGTAAAATAAGACTTCTTTGTATTAAATTCGTTTATTACGAATCATTAAACAATTTTTTTTGTTTTTTTGACAAAATAACATTATATATATATATTGTTTTTTCTTTGTTTCTAATCTAATAATTTTTCATTTTCGATAGCTATATTAGGAGTATACTATAATTTCAAGAATAAATGGATAATAAATAGTAAAGAACAATTGGTTTTGAACAATAGATGTCTTTCACATCCAACTATAGCAATGAATAATCAATTATAATTTTTTAATGGCAGTTCCAAAAAAGCGCACTTCTCTATCAAAAAAACGGATTCGGAAAAATATTTGGAAAAGCAAAGGGCATCGGGCAGCGTTGAAAGCTTTTTCGCTAGCAAAATCTCTTTCAACGGGGAATTCACAAAGTTTTTTGGGGGACAAATCAAATAAATAATTCAAGATTGGAATAATCTGAATCGGTTTGACTCAAAAAACAGCCTAGTAGAAGTTCGTTTATAATTTTTAGAATTTAAATAATAATTTTTTTTTATCAAAGCAATTAGTGGAATTTCCTAATGTTTTGAGCGGATGAATATGAAATTCCTTTTTCTTTTTTTAGGGTATGTAA

mRNA sequence

ATGTCACCAAATCGCCCGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATAATCGCAGTACAGTTTTTCATTTAAGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTTTAAATGTCCATCAAAAGGTATGTAA

Coding sequence (CDS)

ATGTCACCAAATCGCCCGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATAATCGCAGTACAGTTTTTCATTTAAGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTTTAAATGTCCATCAAAAGGTATGTAA

Protein sequence

MSPNRPPFGDALSVEEHNRSTVFHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPFKCPSKGM

Homology

[Close]

BLAST of Lsi06G000370 vs. Swiss-Prot
Match: TI214_COFAR (Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.5e-43
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-42
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NL+SLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FLLGNLLSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. Swiss-Prot
Match: TI214_NICTO (Protein TIC 214 OS=Nicotiana tomentosiformis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-42
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA VMEEGTEKKVSATTGFI
Sbjct: 6   FLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. Swiss-Prot
Match: TI214_NICSY (Protein TIC 214 OS=Nicotiana sylvestris GN=TIC214 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-42
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA VMEEGTEKKVSATTGFI
Sbjct: 6   FLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. Swiss-Prot
Match: TI214_TOBAC (Protein TIC 214 OS=Nicotiana tabacum GN=TIC214 PE=3 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-42
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRA VMEEGTEKKVSATTGFI
Sbjct: 6   FLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRALVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. TrEMBL
Match: A0A0S2IEM6_9ROSI (Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. TrEMBL
Match: A0A0S2IEP3_9ROSI (Uncharacterized protein OS=Cucurbita foetidissima PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. TrEMBL
Match: A0A0S2IEV5_9ROSI (Ycf1 OS=Cucurbita lundelliana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. TrEMBL
Match: A0A0S2IFY8_9ROSI (Uncharacterized protein OS=Cucurbita lundelliana PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. TrEMBL
Match: E5KUF2_CORLA (Putative uncharacterized protein ycf1 OS=Corynocarpus laevigatus GN=ycf1 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-42
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATT 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM   EEGTEKKVSATT
Sbjct: 7   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATT 66

Query: 83  GFITGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           GFI GQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 67  GFIAGQLMMFISIYYAPLHLALGRPHTITVLALPY 101

[Close]

BLAST of Lsi06G000370 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-42
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATT 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM   EEGTEKKVSATT
Sbjct: 7   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATT 66

Query: 83  GFITGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           GFI GQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 67  GFIAGQLMMFISIYYAPLHLALGRPHTITVLALPY 101

[Close]

BLAST of Lsi06G000370 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.4e-41
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATT 82
           F L NLV LCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM   EEGTEKKVSATT
Sbjct: 6   FILGNLVYLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATT 65

Query: 83  GFITGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           GFI GQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  GFIAGQLMMFISIYYAPLHLALGRPHTITVLALPY 100

[Close]

BLAST of Lsi06G000370 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 162.9 bits (411), Expect = 1.2e-40
Identity = 86/95 (90.53%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATT 82
           F L NLV LCMKIINSVVVVGLYYGFLTTFSIGP YLFLLRARVM   EEGTEKKVSATT
Sbjct: 6   FILGNLVYLCMKIINSVVVVGLYYGFLTTFSIGPFYLFLLRARVMDEGEEGTEKKVSATT 65

Query: 83  GFITGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           GFI GQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  GFIAGQLMMFISIYYAPLHLALGRPHTITVLALPY 100

[Close]

BLAST of Lsi06G000370 vs. NCBI nr
Match: gi|952954612|gb|ALO21972.1| (Ycf1 (plastid) [Cucurbita digitata])

HSP 1 Score: 174.9 bits (442), Expect = 8.7e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. NCBI nr
Match: gi|944542131|ref|YP_009176050.1| (hypothetical chloroplast ycf1 (chloroplast) [Ficus racemosa])

HSP 1 Score: 174.9 bits (442), Expect = 8.7e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. NCBI nr
Match: gi|290489064|gb|ADD30916.1| (putative RF1 protein (chloroplast) [Ficus sp. Moore 315])

HSP 1 Score: 174.9 bits (442), Expect = 8.7e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. NCBI nr
Match: gi|116617166|ref|YP_817540.1| (hypothetical chloroplast RF1 [Coffea arabica])

HSP 1 Score: 174.9 bits (442), Expect = 8.7e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

[Close]

BLAST of Lsi06G000370 vs. NCBI nr
Match: gi|346578240|ref|YP_004841831.1| (hypothetical chloroplast RF19-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 174.9 bits (442), Expect = 8.7e-41
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 23  FHLSNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 82
           F L NLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI
Sbjct: 6   FILGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMEEGTEKKVSATTGFI 65

Query: 83  TGQLMMFISIYYAPLHLALGRPHTITVLALPF 115
           TGQLMMFISIYYAPLHLALGRPHTITVLALP+
Sbjct: 66  TGQLMMFISIYYAPLHLALGRPHTITVLALPY 97

The following BLAST results are available for this feature:

BLAST of Lsi06G000370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_COFAR	5.5e-43	96.74	Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1	[more]
TI214_BUXMI	1.2e-42	95.65	Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1	[more]
TI214_NICTO	3.5e-42	95.65	Protein TIC 214 OS=Nicotiana tomentosiformis GN=TIC214 PE=3 SV=1	[more]
TI214_NICSY	3.5e-42	95.65	Protein TIC 214 OS=Nicotiana sylvestris GN=TIC214 PE=3 SV=1	[more]
TI214_TOBAC	3.5e-42	95.65	Protein TIC 214 OS=Nicotiana tabacum GN=TIC214 PE=3 SV=2	[more]

BLAST of Lsi06G000370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IEM6_9ROSI	6.1e-41	96.74	Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1	[more]
A0A0S2IEP3_9ROSI	6.1e-41	96.74	Uncharacterized protein OS=Cucurbita foetidissima PE=4 SV=1	[more]
A0A0S2IEV5_9ROSI	6.1e-41	96.74	Ycf1 OS=Cucurbita lundelliana GN=ycf1 PE=4 SV=1	[more]
A0A0S2IFY8_9ROSI	6.1e-41	96.74	Uncharacterized protein OS=Cucurbita lundelliana PE=4 SV=1	[more]
E5KUF2_CORLA	6.1e-41	96.74	Putative uncharacterized protein ycf1 OS=Corynocarpus laevigatus GN=ycf1 PE=4 SV...	[more]

BLAST of Lsi06G000370 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	4.9e-42	92.63	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	4.9e-42	92.63	ATCG01000.1 Ycf1 protein	[more]
ATMG00370.1	2.4e-41	91.58	ATMG00370.1 Ycf1 protein	[more]
AT2G07739.1	1.2e-40	90.53	Ycf1 protein	[more]

BLAST of Lsi06G000370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954612\|gb\|ALO21972.1\|	8.7e-41	96.74	Ycf1 (plastid) [Cucurbita digitata]	[more]
gi\|944542131\|ref\|YP_009176050.1\|	8.7e-41	96.74	hypothetical chloroplast ycf1 (chloroplast) [Ficus racemosa]	[more]
gi\|290489064\|gb\|ADD30916.1\|	8.7e-41	96.74	putative RF1 protein (chloroplast) [Ficus sp. Moore 315]	[more]
gi\|116617166\|ref\|YP_817540.1\|	8.7e-41	96.74	hypothetical chloroplast RF1 [Coffea arabica]	[more]
gi\|346578240\|ref\|YP_004841831.1\|	8.7e-41	96.74	hypothetical chloroplast RF19-like protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000370.1	Lsi06G000370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 38..114 score: 1.6
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 23..114 score: 3.7
None	No IPR available	PANTHER	PTHR33163:SF3	MEMBRANE PROTEIN YCF1-RELATED	coord: 23..114 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000370	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000370	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000370	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000370	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000370	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000370	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000370	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000370	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000370	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000370	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000370	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000370	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000370	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000370	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000370	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000370	Watermelon (97103) v1	lsiwmB396
Lsi06G000370	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000370	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000370	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000370	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000370	Cucumber (Chinese Long) v3	cuclsiB086
Lsi06G000370	Watermelon (97103) v2	lsiwmbB365
Lsi06G000370	Wax gourd	lsiwgoB522