Lsi06G000350 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Location	chr06 : 351888 .. 353461 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTTTTAGTCCAAGTGTATCTTGTTTTTACTACGAATTATTTTCCTTGGTTAACAACAGTTGTAGTTTTTCCAATATTTGCAGGTTTATTACTTTTCTTTTTCCCTCATAGAGGAAATAAAGTAATGAGATGGTATACTATATGTATCTGTGTACTCGAGCTGCTTCTAACAACCTATGCATTTTGTTATCATTTCGAATTAGACGATCCATTAATCCAACTGATGGAGGATTATAAATGGATCCCTTTTTTGGATTTTTACTGGAGATTGGGAATCGATGGACTTTCCATAGGACCCATTTTACTGACGGGGTTTATCACCACTTTAGCTACTTTAGCGGCTTGGCCAGTTACTCGAGATTCCCGATTATTCCATTTTCTAATGTTAGCAATGTATAGCGGTCAAATAGGATCATTTTCTGCTCGAGACCTCTTACTATTTTTTATCATGTGGGAGTTAGAATTAATTCCCGTTTATCTACTTCTATCGATGTGGGGCGGAAAGAAACGGTTGTATTCAGCTACAAAGTTTATTTTGTACACTGCGGGAGGTTCCATTTTTTTGTTAATGGGAGTTCTGGGTATCGGTTTATATGGTTCTAATGAACCAACTTTAAATTTTGAAACATCAGCTAATCAATCGTATCCTATAGCACTGGAAATACTATTCTATATCGGATTTCTTATTGCTTTTGCTGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACTCACGGAGAGGCACATTACAGTACTTGTATGCTTCTAGCCGGAATCTTATTAAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGAATTATTACCCCACGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCAATTTAAAAAAAAGAATAGCTTATTCCTCCGTCTCTCATATGGGTTTCATAATTATAGGAATTGGTTCTATAAGCGATACGGGACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATCGGCGCTGCGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATGGGAGGACTGGCTATCCCAATTCCAAAAATCTTTACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACCAGCCAAAAATATCTTTTAATGACAAAAATACTAATTACTTTGGTAATGGCAATTGGAATTATATTAACTCCCATTTATTTATTATCTATGTTACGCCAGATGTTCTATGGATACAAGCTTTTTAAGGCTCAAAATTCTTATTTTTTTGATTCGGGACCACGAGAGTTGTTTGTTGCGATCTCTATCCTTATACCTGTCATAGGTATTGGTATTTATCCAGATTTTGTTTTCTCACTATCAGTTGACAAGGTCGAAACTATTTTATCTAATTATTTTGCTAGATAGTTTTCATAAAAAAAATGAAACAGCAATACTATAA

mRNA sequence

ATGGGAATTGGTTCTATAAGCGATACGGGACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATCGGCGCTGCGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATGGGAGGACTGGCTATCCCAATTCCAAAAATCTTTACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGATAGTTTTCATAAAAAAAATGAAACAGCAATACTATAA

Coding sequence (CDS)

ATGGGAATTGGTTCTATAAGCGATACGGGACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATTTATCGGCGCTGCGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATGGGAGGACTGGCTATCCCAATTCCAAAAATCTTTACGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCCGATAGTTTTCATAAAAAAAATGAAACAGCAATACTATAA

Protein sequence

MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALPDSFHKKNETAIL

Homology

[Close]

BLAST of Lsi06G000350 vs. Swiss-Prot
Match: NU4C_CUCSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus GN=ndhD PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-32
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. Swiss-Prot
Match: NU4C_MORIN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica GN=ndhD PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-30
Identity = 67/72 (93.06%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +G+GSI+DTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFTT
Sbjct: 318 IGLGSINDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAITIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. Swiss-Prot
Match: NU4C_SOYBN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Glycine max GN=ndhD PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.8e-30
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDR+RL+YLDEMGG+AIP+PKIFT 
Sbjct: 318 LGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTV 377

Query: 61  FSILSMASLALP 73
           F+ILSMASLALP
Sbjct: 378 FTILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. Swiss-Prot
Match: NU4C_VITVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.8e-30
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSI+DTGLNGAILQIISHGF+GAALFFLAGTSYDRIRL+YLDEMGG+AIP+PKIFT 
Sbjct: 318 IGIGSITDTGLNGAILQIISHGFLGAALFFLAGTSYDRIRLIYLDEMGGIAIPMPKIFTM 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. Swiss-Prot
Match: NU4C_EUCGG (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhD PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-29
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSI+DTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG+AI +PKIFT 
Sbjct: 319 IGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIHLPKIFTI 378

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 379 FSILSMASLALP 390

[Close]

BLAST of Lsi06G000350 vs. TrEMBL
Match: W8E3H3_9ROSI (NAD(P)H-quinone oxidoreductase chain 4 OS=Cucumis hystrix GN=ndhD PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.7e-30
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. TrEMBL
Match: G3ETU9_CUCME (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis melo subsp. melo GN=ndhD PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-29
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIF T
Sbjct: 324 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFMT 383

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 384 FSILSMASLALP 395

[Close]

BLAST of Lsi06G000350 vs. TrEMBL
Match: A0A0S3IU54_9ROSA (NAD(P)H-quinone oxidoreductase chain 4 OS=Prunus hypoleuca GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIAIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. TrEMBL
Match: E3W0P2_PRUPE (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Prunus persica GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIAIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. TrEMBL
Match: A0A0F6PZZ6_9ROSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Prunus padus GN=ndhD PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-29
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAIAIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. TAIR10
Match: ATCG01050.1 (ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 124.8 bits (312), Expect = 2.5e-29
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GI SI+D GLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFT 
Sbjct: 324 IGISSITDPGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISIPKIFTM 383

Query: 61  FSILSMASLALP 73
           F+ILSMASLALP
Sbjct: 384 FTILSMASLALP 395

[Close]

BLAST of Lsi06G000350 vs. TAIR10
Match: ATMG00580.1 (ATMG00580.1 NADH dehydrogenase subunit 4)

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-06
Identity = 27/84 (32.14%), Postives = 46/84 (54.76%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +G+ S +  G+ G+IL ++SHG + +ALF   G  YDR +   +   GGL   +P + T 
Sbjct: 321 IGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNLSTI 380

Query: 61  FSILSMASLALPDSFHKKNETAIL 85
           F   ++A+++ P +     E  IL
Sbjct: 381 FFSFTLANMSSPGTSSFIGEFLIL 404

[Close]

BLAST of Lsi06G000350 vs. NCBI nr
Match: gi|115432850|gb|ABI97463.1| (NADH-plastoquinone oxidoreductase subunit 4 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 8.2e-30
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. NCBI nr
Match: gi|590000462|ref|YP_009004091.1| (NADH-plastoquinone oxidoreductase subunit 4 [Cucumis hystrix])

HSP 1 Score: 137.9 bits (346), Expect = 8.2e-30
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. NCBI nr
Match: gi|68164854|ref|YP_247650.1| (NADH dehydrogenase subunit 4 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 377

Query: 61  FSILSMASLALP 73
           F+ILSMASLALP
Sbjct: 378 FNILSMASLALP 389

[Close]

BLAST of Lsi06G000350 vs. NCBI nr
Match: gi|346578244|ref|YP_004841835.1| (NADH-plastoquinone oxidoreductase subunit 4 [Cucumis melo subsp. melo])

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-29
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIF T
Sbjct: 324 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFMT 383

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 384 FSILSMASLALP 395

[Close]

BLAST of Lsi06G000350 vs. NCBI nr
Match: gi|511265908|gb|AGN72015.1| (NADH-plastoquinone oxidoreductase subunit 4 [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   MGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTT 60
           +GIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG+AI IPKIFTT
Sbjct: 318 IGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGMAISIPKIFTT 377

Query: 61  FSILSMASLALP 73
           FSILSMASLALP
Sbjct: 378 FSILSMASLALP 389

The following BLAST results are available for this feature:

BLAST of Lsi06G000350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NU4C_CUCSA	5.1e-32	98.61	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus GN=ndhD...	[more]
NU4C_MORIN	2.8e-30	93.06	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica GN=ndhD PE...	[more]
NU4C_SOYBN	4.8e-30	90.28	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Glycine max GN=ndhD PE=...	[more]
NU4C_VITVI	4.8e-30	90.28	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD ...	[more]
NU4C_EUCGG	1.8e-29	91.67	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Eucalyptus globulus sub...	[more]

BLAST of Lsi06G000350 vs. TrEMBL


Match Name	E-value	Identity	Description
W8E3H3_9ROSI	5.7e-30	98.61	NAD(P)H-quinone oxidoreductase chain 4 OS=Cucumis hystrix GN=ndhD PE=3 SV=1	[more]
G3ETU9_CUCME	2.8e-29	97.22	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis melo subsp. mel...	[more]
A0A0S3IU54_9ROSA	8.3e-29	95.83	NAD(P)H-quinone oxidoreductase chain 4 OS=Prunus hypoleuca GN=ndhD PE=3 SV=1	[more]
E3W0P2_PRUPE	8.3e-29	95.83	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Prunus persica GN=ndhD ...	[more]
A0A0F6PZZ6_9ROSA	8.3e-29	95.83	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Prunus padus GN=ndhD PE...	[more]

BLAST of Lsi06G000350 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01050.1	2.5e-29	88.89	ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATMG00580.1	2.3e-06	32.14	ATMG00580.1 NADH dehydrogenase subunit 4	[more]

BLAST of Lsi06G000350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|115432850\|gb\|ABI97463.1\|	8.2e-30	98.61	NADH-plastoquinone oxidoreductase subunit 4 [Cucumis sativus]	[more]
gi\|590000462\|ref\|YP_009004091.1\|	8.2e-30	98.61	NADH-plastoquinone oxidoreductase subunit 4 [Cucumis hystrix]	[more]
gi\|68164854\|ref\|YP_247650.1\|	1.8e-29	97.22	NADH dehydrogenase subunit 4 [Cucumis sativus]	[more]
gi\|346578244\|ref\|YP_004841835.1\|	4.1e-29	97.22	NADH-plastoquinone oxidoreductase subunit 4 [Cucumis melo subsp. melo]	[more]
gi\|511265908\|gb\|AGN72015.1\|	1.2e-28	95.83	NADH-plastoquinone oxidoreductase subunit 4 [Dasiphora fruticosa subsp. floribun...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0042773	ATP synthesis coupled electron transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008137	NADH dehydrogenase (ubiquinone) activity

Vocabulary: **INTERPRO**
Term	Definition
IPR003918	NADH_UbQ_OxRdtase
IPR001750	ND/Mrp_mem

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000350.1	Lsi06G000350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 6..72 score: 3.
IPR003918	NADH:ubiquinone oxidoreductase	PRINTS	PR01437	NUOXDRDTASE4	coord: 62..84 score: 7.8E-8coord: 10..29 score: 7.
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 1..72 score: 1.2
None	No IPR available	PANTHER	PTHR22773:SF92	NAD(P)H-QUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLASTIC	coord: 1..72 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000350	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000350	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000350	Cucumber (Chinese Long) v3	cuclsiB086
Lsi06G000350	Watermelon (97103) v2	lsiwmbB365
Lsi06G000350	Wax gourd	lsiwgoB522
Lsi06G000350	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000350	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000350	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000350	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000350	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000350	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000350	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000350	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000350	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000350	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000350	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000350	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000350	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000350	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000350	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000350	Watermelon (97103) v1	lsiwmB396
Lsi06G000350	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000350	Cucumber (Gy14) v2	cgyblsiB073