Lsi06G000340 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Photosystem I iron-sulfur center
Location	chr06 : 349375 .. 351774 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTTGTTTGATGTGACTTATCTTTTAATTAGTCTTACTTGATAGGATTGGAGATATCTCTTCTTTTGAGCCTTTTATCTAATTTATCTAAATGGATTTGAATTGCTAATCAAAAAAGTTTTTATCGATTTTATAGATATCCATCGATATATCTAGATAATTATCTATATCAATATAATTATATATGTCTATAATTATATATCTATATAATAAAAGGGGAGATAAAGATAATAAAGAGAGATAAAGAAGGGCTTTTTTCAAGCCTTCATTTTCTATTTTTTATACAATGTATCATAGTAATTATCCTTTTTCAATTTGGGGAGAGATGGCTGAGTGGACTAAAGCGGCGGATTGCTAATCCGTTGTACGATTTTTTTGTACCGAGGGTTCGAATCCCTCTCTTTTCGTTTCTGTCAATTACTTGGTTTTTTTTTATAGTTGAGGAAAAATGTGCAATAGATAAAATGTTAAGAACATTTCAAAATCAAGCAAGGAAAAAAATCAGATTTTTTTTATTCTTCACGCCCCGGATTACGTCCCGGGTCATTAGATAGGAATCCGAAAATGAAGAGAGAAACAAAGAATATTACTACAAATCCAAACTATTGATTCATGAGAATTGCAGCTTAATTTAGATTGAAACTATATATTTCGAAATATATAGTTTCAATCTACTCTACTCTTTCAGATCAAGACTAAGATTAATACAATAACTGTATCTACATTAATTCACACCCCTTAAGATTTAATTAGGAATTGATTATACATTTTTTTTCCTGGTCAGATCAATAAGGTCATGAAAAACATTTAGATTTAATTATCTCTTTTTTTACTACATATAATGGATTTGCCTGGACCGATACATGATTTTCTTGTAGTCTTGTTGGGATCGGGTCTTATATTAGGAAGTATGGGAGTACTATTATTTAACAACTCCATTTATTCTGCTTTTTCTTGGGACTGGTTCTTGTTTCTATATCCTTATTCTATATTCTAGCAAACGCCCAGTTTGTAGCTGCTGCGCAACTCCTTATTTACGTGGGAGCTATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAAGGGTTCAGAATATTCCAAAGATTTTAATCTTTGGACCATTGAGAATGGAGTTGCTTTTCTGGTTTGTACAAGTATTTTTGTTTCACTAATGACTACTATTGTAGATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCAAGATTTAATAAGTAATAGTCAACAAAATGGAATTTATTTATCAACATATTTTTTTCTTCCATTTGAACTCATTTCGATCATTCTTTTAGCTGCTTTGATCGACGCAATTGTCGTGGCTCGTCAGTAATAAATCTTTAGTTAGAAATAGCATAAATTAAACTTTGTTCTATGTTATCATACACATTCCCCTTCAATTCTATTTGAAGATTTTTTTCTGTCTAAAATCAAAATTCTTTTATTCGATCAATTACCAATATATTCCCGTGTTCTGTACTTTTTTTTTGTCAATTGAATTGAATCTATTACATTTTTGTTCATATTGAAATGAATCGGAATTGATAAGGAGTTGGTCAATCATGCTCGAACATGTACTTATTATAAGTGCCTATTTATTTTCTATCGGTATCTATGGATTGATCACGAGCCGAAATATGGTTAGGGCCCTTATGTGTCTTGAGCTTATACTGAATGCAGTTAATATGAATTTCGTAACATTTTCTGATTTTTTTGATAGTCGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTATAGCTATTGCAGCCGCTGAAGCAGCTATTGGCCCAGCTATTGTTTCGTCAATTTATCGTAACAGAAAATCAACTCGTATCAATCAATCGAATTTGTTGAATAAGTAGTATTTATTTATCAGATAAATTCTGATATTCATCAAGTAAAATTATCTGTATGATACGTAATCCACGATCATGTTTGCGAAAACGTAAAAAATCAAAGTATCTTGGCCCTATCGCATGAGTTAATCTGAAAGTAGATTGATTATAAAAATTCTGATAAATTATTGACTCATCTGGTATCTAAATATATAATTCATTTACAAATTTACTCGATCGAAAATTTATAGTCTTAAAAAAAATTATAGATCCAATGTCACATTCAGTAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCTCCAAGAACAGAAGACTGTGTTGGTTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGA

mRNA sequence

ATGATATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCAAGATTTAATAATCGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTATAGCTATTGCAGCCGCTGAAGCAGCTATTGGCCCAGCTATTGTTTCGTCAATTTATCGGTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCTCCAAGAACAGAAGACTGTGTTGGTTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGA

Coding sequence (CDS)

ATGATATACGTCATGGTATGGGATTATTTGGACTACAAGATCAAACCAGATTCTAGAGCAAGATTTAATAATCGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTATAGCTATTGCAGCCGCTGAAGCAGCTATTGGCCCAGCTATTGTTTCGTCAATTTATCGGTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCTCCAAGAACAGAAGACTGTGTTGGTTGTAAGAGATGTGAATCTGCCTGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGA

Protein sequence

MIYVMVWDYLDYKIKPDSRARFNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY

Homology

[Close]

BLAST of Lsi06G000340 vs. Swiss-Prot
Match: PSAC_PEA (Photosystem I iron-sulfur center OS=Pisum sativum GN=psaC PE=1 SV=3)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. Swiss-Prot
Match: PSAC_CUCSA (Photosystem I iron-sulfur center OS=Cucumis sativus GN=psaC PE=1 SV=3)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. Swiss-Prot
Match: PSAC_PHAVU (Photosystem I iron-sulfur center OS=Phaseolus vulgaris GN=psaC PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. Swiss-Prot
Match: PSAC_AETCO (Photosystem I iron-sulfur center OS=Aethionema cordifolium GN=psaC PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-35
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. Swiss-Prot
Match: PSAC_SOLLC (Photosystem I iron-sulfur center OS=Solanum lycopersicum GN=psaC PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-35
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. TrEMBL
Match: A0A0E0EN62_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-44
Identity = 89/103 (86.41%), Postives = 98/103 (95.15%), Query Frame = 1


Query: 22  FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVRACPTDVLEMIPWGGCKAKQ 81
           F++RQLKG+IF+IFVIA+AAAEAAIG +I+SSI+RCTQCVRACPTDVLEMIPW GCKAKQ
Sbjct: 26  FDSRQLKGDIFAIFVIALAAAEAAIGLSILSSIHRCTQCVRACPTDVLEMIPWDGCKAKQ 85

Query: 82  IASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 125
           IASAPRTEDCVGCKRCESACPTDFLSVRVYL  ETTRSM L+Y
Sbjct: 86  IASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY 128

[Close]

BLAST of Lsi06G000340 vs. TrEMBL
Match: A0A0S2IE23_9ROSI (Photosystem I iron-sulfur center OS=Cucurbita argyrosperma subsp. sororia GN=psaC PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. TrEMBL
Match: A0A0S2IFZ1_9ROSI (Photosystem I iron-sulfur center OS=Cucurbita okeechobeensis subsp. martinezii GN=psaC PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. TrEMBL
Match: A0A0F6NFH3_LATOH (Photosystem I iron-sulfur center OS=Lathyrus ochroleucus GN=psaC PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. TrEMBL
Match: A0A0K0LXC6_9FABA (Photosystem I iron-sulfur center OS=Lathyrus decaphyllus GN=psaC PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. TAIR10
Match: ATCG01060.1 (ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding)

HSP 1 Score: 150.6 bits (379), Expect = 6.4e-37
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPW GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. TAIR10
Match: ATCG01070.1 (ATCG01070.1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 22 FNNRQLKGNIFSIFVIAIAAAEAAIGPAIVSSIYRCTQCVR 63
          F+N QLKG IF IFVIAIAAAEAAIG AIVSSIYR  + +R
Sbjct: 52 FDNSQLKGEIFCIFVIAIAAAEAAIGLAIVSSIYRNRKSIR 92

[Close]

BLAST of Lsi06G000340 vs. NCBI nr
Match: gi|149242529|pdb|2O01|C (Chain C, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 13  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 72

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 73  TRSMGLAY 80

[Close]

BLAST of Lsi06G000340 vs. NCBI nr
Match: gi|68164855|ref|YP_247651.1| (photosystem I subunit VII [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. NCBI nr
Match: gi|821317353|ref|YP_009138437.1| (photosystem I subunit VII (chloroplast) [Lathyrus davidii])

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. NCBI nr
Match: gi|827045131|ref|YP_009141471.1| (photosystem I subunit VII (chloroplast) [Lathyrus tingitanus])

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-34
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR+YLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRIYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGLAY
Sbjct: 74  TRSMGLAY 81

[Close]

BLAST of Lsi06G000340 vs. NCBI nr
Match: gi|372484553|gb|AEX95917.1| (photosystem I subunit VII (chloroplast) [Camassia scilloides])

HSP 1 Score: 152.1 bits (383), Expect = 6.2e-34
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 57  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 116
           CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET
Sbjct: 14  CTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHET 73

Query: 117 TRSMGLAY 125
           TRSMGL+Y
Sbjct: 74  TRSMGLSY 81

The following BLAST results are available for this feature:

BLAST of Lsi06G000340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAC_PEA	1.7e-36	100.00	Photosystem I iron-sulfur center OS=Pisum sativum GN=psaC PE=1 SV=3	[more]
PSAC_CUCSA	1.7e-36	100.00	Photosystem I iron-sulfur center OS=Cucumis sativus GN=psaC PE=1 SV=3	[more]
PSAC_PHAVU	1.7e-36	100.00	Photosystem I iron-sulfur center OS=Phaseolus vulgaris GN=psaC PE=3 SV=1	[more]
PSAC_AETCO	1.1e-35	98.53	Photosystem I iron-sulfur center OS=Aethionema cordifolium GN=psaC PE=3 SV=1	[more]
PSAC_SOLLC	1.1e-35	98.53	Photosystem I iron-sulfur center OS=Solanum lycopersicum GN=psaC PE=3 SV=1	[more]

BLAST of Lsi06G000340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0EN62_9ORYZ	3.5e-44	86.41	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]
A0A0S2IE23_9ROSI	1.9e-34	100.00	Photosystem I iron-sulfur center OS=Cucurbita argyrosperma subsp. sororia GN=psa...	[more]
A0A0S2IFZ1_9ROSI	1.9e-34	100.00	Photosystem I iron-sulfur center OS=Cucurbita okeechobeensis subsp. martinezii G...	[more]
A0A0F6NFH3_LATOH	1.9e-34	100.00	Photosystem I iron-sulfur center OS=Lathyrus ochroleucus GN=psaC PE=3 SV=1	[more]
A0A0K0LXC6_9FABA	1.9e-34	100.00	Photosystem I iron-sulfur center OS=Lathyrus decaphyllus GN=psaC PE=3 SV=1	[more]

BLAST of Lsi06G000340 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01060.1	6.4e-37	98.53	ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur clust...	[more]
ATCG01070.1	1.6e-08	75.61	ATCG01070.1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L	[more]

BLAST of Lsi06G000340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|149242529\|pdb\|2O01\|C	2.8e-34	100.00	Chain C, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Res...	[more]
gi\|68164855\|ref\|YP_247651.1\|	2.8e-34	100.00	photosystem I subunit VII [Cucumis sativus]	[more]
gi\|821317353\|ref\|YP_009138437.1\|	2.8e-34	100.00	photosystem I subunit VII (chloroplast) [Lathyrus davidii]	[more]
gi\|827045131\|ref\|YP_009141471.1\|	3.6e-34	98.53	photosystem I subunit VII (chloroplast) [Lathyrus tingitanus]	[more]
gi\|372484553\|gb\|AEX95917.1\|	6.2e-34	98.53	photosystem I subunit VII (chloroplast) [Camassia scilloides]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042651	thylakoid membrane
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0009773	photosynthetic electron transport in photosystem I

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051539	4 iron, 4 sulfur cluster binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017900	4Fe4S_Fe_S_CS
IPR017896	4Fe4S_Fe-S-bd
IPR017491	PSI_PsaC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009533	chloroplast stromal thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000340.1	Lsi06G000340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017491	Photosystem I protein PsaC	TIGRFAMs	TIGR03048	TIGR03048	coord: 54..124 score: 8.4
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PFAM	PF00037	Fer4	coord: 88..106 score: 1.
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PFAM	PF12800	Fer4_4	coord: 56..66 score:
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROFILE	PS51379	4FE4S_FER_2	coord: 82..111 score: 8.71coord: 42..74 score: 6
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 91..102 scor
None	No IPR available	GENE3D	G3DSA:3.30.70.20		coord: 56..111 score: 1.2
None	No IPR available	PANTHER	PTHR24960	FAMILY NOT NAMED	coord: 57..120 score: 6.6
None	No IPR available	PANTHER	PTHR24960:SF40	SUBFAMILY NOT NAMED	coord: 57..120 score: 6.6
None	No IPR available	unknown	SSF54862	4Fe-4S ferredoxins	coord: 55..109 score: 5.44

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000340	Wax gourd	lsiwgoB522
Lsi06G000340	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000340	Cucumber (Gy14) v1	cgylsiB035
Lsi06G000340	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000340	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000340	Cucurbita maxima (Rimu)	cmalsiB142
Lsi06G000340	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000340	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000340	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000340	Cucurbita pepo (Zucchini)	cpelsiB560
Lsi06G000340	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000340	Wild cucumber (PI 183967)	cpilsiB076
Lsi06G000340	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000340	Cucumber (Chinese Long) v2	culsiB075
Lsi06G000340	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000340	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000340	Watermelon (97103) v1	lsiwmB396
Lsi06G000340	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000340	Cucumber (Gy14) v2	cgyblsiB073
Lsi06G000340	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000340	Cucumber (Chinese Long) v3	cuclsiB068
Lsi06G000340	Cucumber (Chinese Long) v3	cuclsiB086
Lsi06G000340	Watermelon (97103) v2	lsiwmbB365