Lsi05G022090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Holliday junction resolvase-like protein
Location	chr05 : 28661254 .. 28662603 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTGAATGATGGAGAACCTAGTCAATTACTAGGAATTTTGATACAAGTGCAAACTTCTATATGAAACTGATGGAGAATTGACTTGTTTCTTATGAGGGTTGTTGCATGGATAGTGACACATTTTGGTCGCCTGTAGTTATTTGGCATTATAAGTTTCCGTCTTGCTTTATTGTATTTAATGGAAGAGTACAACGGGACAGTTTATATTTAAAATGGGCCTTGCGGCTGTTTTTAGATTTTCATTATGCAAATTAGATGCTTTGTTCACATAAGAAAAAGAAAATTTCTTATCCTACTAGTATAGAAAAGACATTTTAGTATTTTTTAGATATTTCTCTTGCGGTTCTCTCAGTGTAAATTGGGTGACTCCCAGACCCTGTCCGTTCAACAGCTATGGACTATGGTTAGTCTGTTTGCATCGACTGGAAGAACTCTATGTTGTATTTTTTAGGCTTGGGGTTGCCTTTTCTCCCCCTCCCTTCCAATAATCTACGAAATTGGTTGGTTTCTTATTGAAAAATAAATAATGATATCCTCTTTGTATCAGTAGATCTATACTTCTCTATTTGGGTTGGTCACATAATGACGTATAGTAACAAAACAAGATATGAATATGGAAAGATGTTTTCTTCAGGGGGCTCAATAAATCTACTCGGCAGAAGAAGGTTGATGCCTATGCTGCCATGGTAAAGTGGTGAATATTTTCATATTTATGAGCATTGGATGATAATAAATGCAGCAATCCATGTCAGGCTTTTTTGTTTTCAAATAATTTTCTCACGTTACTTTCTTTATTTGACGCAGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAGCCGAACTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGAGAATGTGCTTCAGTCAATGAAAAAATAAACTGGGAGACGCCCTCGGTCAGAAGTTGGGAAGTTCCTGATAGTTTTCTTGAGAGAAAACAAGATTGCTATCAGAAATAGGTATTTATTTCTGTTGAAGTGGAAGAGAACCACTACCTACATAGAAATGGATGGTACTTTGAGACGAGGGTTACTTCCTCAAAACATGGTCACGAACCTTCCTAATGAAGGCTCAGTTGAAGTTAGCAGTGGTCATGAGATGATACATTTGACATTATATCTTTATAACATCCTTGTTAAAATCTCCTTCTCACATATTGAATTCACCTAGACTTTGGTTGGTTATATGCACCTTTTACTTGTGCCCGACCCTGATCAGAAATGTAGCGGAAAATTTAAAAAATTTCTTATCAAAGAAATTAAGTAGATAT

mRNA sequence

ATGACATATTTCTCTTGCGGTTCTCTCAGTGTAAATTGGGTGACTCCCAGACCCTGTCCGTTCAACAGCTATGGACTATGGGGGCTCAATAAATCTACTCGGCAGAAGAAGGTTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAGCCGAACTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGAGAATGTGCTTCAGTCAATGAAAAAATAAACTGGGAGACGCCCTCGGTCAGAAGTTGGGAAGTTCCTGATAGTTTTCTTGAGAGAAAACAAGATTGCTATCAGAAATAGGTATTTATTTCTGTTGAAGTGGAAGAGAACCACTACCTACATAGAAATGGATGGTACTTTGAGACGAGGGTTACTTCCTCAAAACATGGTCACGAACCTTCCTAATGAAGGCTCAGTTGAAGTTAGCAGTGGTCATGAGATGATACATTTGACATTATATCTTTATAACATCCTTGTTAAAATCTCCTTCTCACATATTGAATTCACCTAGACTTTGGTTGGTTATATGCACCTTTTACTTGTGCCCGACCCTGATCAGAAATGTAGCGGAAAATTTAAAAAATTTCTTATCAAAGAAATTAAGTAGATAT

Coding sequence (CDS)

ATGACATATTTCTCTTGCGGTTCTCTCAGTGTAAATTGGGTGACTCCCAGACCCTGTCCGTTCAACAGCTATGGACTATGGGGGCTCAATAAATCTACTCGGCAGAAGAAGGTTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAGCCGAACTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

Protein sequence

MTYFSCGSLSVNWVTPRPCPFNSYGLWGLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD

Homology

[Close]

BLAST of Lsi05G022090 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-20
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD 85
           GLNKSTRQKK+DAYAAMMVLERYF  SG+G EL+VPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 179 GLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of Lsi05G022090 vs. TrEMBL
Match: A0A067KPF4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04739 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GL KS RQK VDAYAA+MVLERYF MSGEG ELVVPK L LQDKL +GPP D DF
Sbjct: 179 GLRKSARQKSVDAYAAVMVLERYFCMSGEGTELVVPKQLDLQDKLRKGPPKDLDF 233

[Close]

BLAST of Lsi05G022090 vs. TrEMBL
Match: M5XKF9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010962mg PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-14
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GL KS RQ KVDAYAA+MVLERYF MSG+G ELVVPK+L LQDKL  GPP D DF
Sbjct: 168 GLGKSDRQSKVDAYAAVMVLERYFSMSGQGTELVVPKNLDLQDKLRRGPPKDIDF 222

[Close]

BLAST of Lsi05G022090 vs. TrEMBL
Match: B9N0F0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23400g PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-13
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GLNKSTRQKKVDAYAA+MVLERYF   GEG ELV+PK   LQ+KL  GPP D DF
Sbjct: 197 GLNKSTRQKKVDAYAAVMVLERYFSTFGEGTELVLPKQSDLQEKLQRGPPADIDF 251

[Close]

BLAST of Lsi05G022090 vs. TrEMBL
Match: B9SP56_RICCO (Hydrolase, acting on ester bonds, putative OS=Ricinus communis GN=RCOM_0628520 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GL+K  RQK +DAYAA+MVLERY+  SGEG ELV+PK L LQDKL +GPP D DF
Sbjct: 182 GLSKGARQKSIDAYAAVMVLERYYAASGEGTELVIPKRLDLQDKLRKGPPKDIDF 236

[Close]

BLAST of Lsi05G022090 vs. TAIR10
Match: AT1G12244.1 (AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-12
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GL+KS RQ + DAYAA+++LERYF   G G E+++PKSL LQ K+  G P DPDF
Sbjct: 189 GLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGAPVDPDF 243

[Close]

BLAST of Lsi05G022090 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD 85
           GLNKSTRQKK+DAYAAMMVLERYF MSG+G EL+VPKSLVLQDKLIEGPPTDPDFKD
Sbjct: 216 GLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 272

[Close]

BLAST of Lsi05G022090 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-20
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDFKD 85
           GLNKSTRQKK+DAYAAMMVLERYF  SG+G EL+VPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 179 GLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of Lsi05G022090 vs. NCBI nr
Match: gi|802596489|ref|XP_012072278.1| (PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GL KS RQK VDAYAA+MVLERYF MSGEG ELVVPK L LQDKL +GPP D DF
Sbjct: 179 GLRKSARQKSVDAYAAVMVLERYFCMSGEGTELVVPKQLDLQDKLRKGPPKDLDF 233

[Close]

BLAST of Lsi05G022090 vs. NCBI nr
Match: gi|645253438|ref|XP_008232575.1| (PREDICTED: uncharacterized protein LOC103331706 [Prunus mume])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GL KS RQ K+DAYAA+MVLERYF MSGEG ELVVPK+L LQDKL  GPP D DF
Sbjct: 183 GLGKSDRQSKIDAYAAVMVLERYFSMSGEGTELVVPKNLDLQDKLRRGPPKDTDF 237

[Close]

BLAST of Lsi05G022090 vs. NCBI nr
Match: gi|596004620|ref|XP_007218316.1| (hypothetical protein PRUPE_ppa010962mg [Prunus persica])

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-14
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 28  GLNKSTRQKKVDAYAAMMVLERYFFMSGEGAELVVPKSLVLQDKLIEGPPTDPDF 83
           GL KS RQ KVDAYAA+MVLERYF MSG+G ELVVPK+L LQDKL  GPP D DF
Sbjct: 168 GLGKSDRQSKVDAYAAVMVLERYFSMSGQGTELVVPKNLDLQDKLRRGPPKDIDF 222

The following BLAST results are available for this feature:

BLAST of Lsi05G022090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G022090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3L5_CUCSA	1.8e-20	87.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1	[more]
A0A067KPF4_JATCU	2.0e-14	78.18	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04739 PE=3 SV=1	[more]
M5XKF9_PRUPE	5.7e-14	76.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010962mg PE=3 SV=1	[more]
B9N0F0_POPTR	2.2e-13	74.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23400g PE=3 SV=1	[more]
B9SP56_RICCO	1.1e-12	69.09	Hydrolase, acting on ester bonds, putative OS=Ricinus communis GN=RCOM_0628520 P...	[more]

BLAST of Lsi05G022090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12244.1	1.3e-12	58.18	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Lsi05G022090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074761\|ref\|XP_008437782.1\|	1.4e-21	91.23	PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo]	[more]
gi\|449431960\|ref\|XP_004133768.1\|	2.6e-20	87.72	PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus]	[more]
gi\|802596489\|ref\|XP_012072278.1\|	2.8e-14	78.18	PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]	[more]
gi\|645253438\|ref\|XP_008232575.1\|	2.8e-14	76.36	PREDICTED: uncharacterized protein LOC103331706 [Prunus mume]	[more]
gi\|596004620\|ref\|XP_007218316.1\|	8.2e-14	76.36	hypothetical protein PRUPE_ppa010962mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022090.1	Lsi05G022090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 28..82 score: 7.8
None	No IPR available	PANTHER	PTHR33317:SF2	HOLLIDAY JUNCTION RESOLVASE-RELATED	coord: 28..82 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G022090	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G022090	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G022090	Silver-seed gourd	carlsiB088
Lsi05G022090	Silver-seed gourd	carlsiB119
Lsi05G022090	Cucumber (Chinese Long) v3	cuclsiB228
Lsi05G022090	Watermelon (97103) v2	lsiwmbB333
Lsi05G022090	Wax gourd	lsiwgoB433
Lsi05G022090	Cucumber (Gy14) v1	cgylsiB415
Lsi05G022090	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G022090	Cucurbita maxima (Rimu)	cmalsiB766
Lsi05G022090	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G022090	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G022090	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G022090	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G022090	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G022090	Cucumber (Chinese Long) v2	culsiB209
Lsi05G022090	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G022090	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G022090	Watermelon (97103) v1	lsiwmB365