Lsi05G021660 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G021660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Rho GTPase-activating protein 1
Location	chr05 : 28377187 .. 28377666 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGCTTATTTCGATCCAAATCGTGCGGACACGTCAGAGTTGCGGAATTCAAGCCACCGCCGCCACCGCCGACCTCTTATTACGACAGTGATGATGAGGAGGAAGAGGAAGAAGAGGAAGAGGAAGAAGAGGACGATTATTATGGAGATGGGGTTGCGATTGGGGTAAATGAAAATGGGTATGGCTTGGTTTTGAGAAATTCAGTCTGCGATAGTGATGAGGACAAGCAAGAGGGAGCTACGAGGCATAGTAATAACGGGAATCAGTTTCCGATACTTGACATTTTGGTAACGGCATTGAGGAAATCGTTGGTTACTTGCAGTGTGGAACCGGATGATGTTTCTTCCATGGATATTAGCTCGCCTGTGAATGTGAGGCATGTTTCTCATGTTACGTTTGATAGGTTCAATGGGTTTCTGGGTTTGCCTACAGAGTTCGAGCCTGAGGTGCCAACCAGAGTGCCAAGCGCCAGGTGA

mRNA sequence

ATGACTCGCTTATTTCGATCCAAATCGTGCGGACACGTCAGAGTTGCGGAATTCAAGCCACCGCCGCCACCGCCGACCTCTTATTACGACAGTGATGATGAGGAGGAAGAGGAAGAAGAGGAAGAGGAAGAAGAGGACGATTATTATGGAGATGGGGTTGCGATTGGGGTAAATGAAAATGGGTATGGCTTGGTTTTGAGAAATTCAGTCTGCGATAGTGATGAGGACAAGCAAGAGGGAGCTACGAGGCATAGTAATAACGGGAATCAGTTTCCGATACTTGACATTTTGGTAACGGCATTGAGGAAATCGTTGGTTACTTGCAGTGTGGAACCGGATGATGTTTCTTCCATGGATATTAGCTCGCCTGTGAATGTGAGGCATGTTTCTCATGTTACGTTTGATAGGTTCAATGGGTTTCTGGGTTTGCCTACAGAGTTCGAGCCTGAGGTGCCAACCAGAGTGCCAAGCGCCAGGTGA

Coding sequence (CDS)

ATGACTCGCTTATTTCGATCCAAATCGTGCGGACACGTCAGAGTTGCGGAATTCAAGCCACCGCCGCCACCGCCGACCTCTTATTACGACAGTGATGATGAGGAGGAAGAGGAAGAAGAGGAAGAGGAAGAAGAGGACGATTATTATGGAGATGGGGTTGCGATTGGGGTAAATGAAAATGGGTATGGCTTGGTTTTGAGAAATTCAGTCTGCGATAGTGATGAGGACAAGCAAGAGGGAGCTACGAGGCATAGTAATAACGGGAATCAGTTTCCGATACTTGACATTTTGGTAACGGCATTGAGGAAATCGTTGGTTACTTGCAGTGTGGAACCGGATGATGTTTCTTCCATGGATATTAGCTCGCCTGTGAATGTGAGGCATGTTTCTCATGTTACGTTTGATAGGTTCAATGGGTTTCTGGGTTTGCCTACAGAGTTCGAGCCTGAGGTGCCAACCAGAGTGCCAAGCGCCAGGTGA

Protein sequence

MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNENGYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSAR

Homology

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BLAST of Lsi05G021660 vs. Swiss-Prot
Match: RGAP3_ARATH (Rho GTPase-activating protein 3 OS=Arabidopsis thaliana GN=ROPGAP3 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-21
Identity = 68/163 (41.72%), Postives = 87/163 (53.37%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYD-SDDEEEEEEEEEEEEDDYYGDGVAIGVNE 60
           MT   RSKS G +   EFKP  P P  Y +  +D++E EE       DYY     +  + 
Sbjct: 1   MTNFSRSKSTGTIGFPEFKPTRPGPDKYENIHNDDDEYEEGHSTTSTDYYDASTPLSSHA 60

Query: 61  NGYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLV-TCSVE---PDDV 120
           +  G                    + +   Q  ++D+L   LRKSLV +C++E    D V
Sbjct: 61  SRSG--------------------NGSGSGQLTVVDLLAAVLRKSLVMSCAMERGEDDVV 120

Query: 121 SSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           +SMDI  P  V+HVSHVTFDRFNGFLGLP+E EPEVP R PSA
Sbjct: 121 ASMDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSA 143

[Close]

BLAST of Lsi05G021660 vs. Swiss-Prot
Match: RGAP1_ARATH (Rho GTPase-activating protein 1 OS=Arabidopsis thaliana GN=ROPGAP1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 79  EGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDISSPVNVRHVSHVTFDRFN 138
           +G        +Q  +L +LV   R+SL++C     ++ SM+I  P NVRHV+HVTFDRFN
Sbjct: 76  DGGEEDDGGEDQISLLALLVAIFRRSLISCKSNRRELCSMEIGWPTNVRHVAHVTFDRFN 135

Query: 139 GFLGLPTEFEPEVPTRVPSA 159
           GFLGLP EFEPEVP R PSA
Sbjct: 136 GFLGLPVEFEPEVPRRAPSA 155

[Close]

BLAST of Lsi05G021660 vs. Swiss-Prot
Match: RGAP4_ARATH (Rho GTPase-activating protein 4 OS=Arabidopsis thaliana GN=ROPGAP4 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-18
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 72  DSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDISSPVNVRHVSH 131
           + +E+++E + +          L+ILV+A+R+S++   V  +D+ SM+I  P +VRHV+H
Sbjct: 45  EEEEEEEERSEKERERFELSSALEILVSAIRRSVIGGCVGEEDLCSMEIGVPTDVRHVAH 104

Query: 132 VTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           VTFDRF+GFLGLP EFEPEVP R PSA
Sbjct: 105 VTFDRFHGFLGLPVEFEPEVPRRAPSA 131

[Close]

BLAST of Lsi05G021660 vs. Swiss-Prot
Match: RGAP2_ARATH (Rho GTPase-activating protein 2 OS=Arabidopsis thaliana GN=ROPGAP2 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-16
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1


Query: 67  RNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVE--PDD---------- 126
           R S  + +E++++       N  Q  +++ L+TALRKS+V+C V+   DD          
Sbjct: 22  RKSTAEEEEEEEQ-------NQQQLSLVEFLLTALRKSVVSCRVDNRQDDGGVGGGISSA 81

Query: 127 VSSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           V  M+I  P NVRH++HVTFDRF+GFLGLP E + E+P RVPSA
Sbjct: 82  VHHMEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIPCRVPSA 118

[Close]

BLAST of Lsi05G021660 vs. Swiss-Prot
Match: RGAP5_ARATH (Rho GTPase-activating protein 5 OS=Arabidopsis thaliana GN=ROPGAP5 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1


Query: 118 MDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           MDI  P N+RHV+HVTFDRF+GFLGLP+EFEP+VP + PSA
Sbjct: 1   MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSA 41

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BLAST of Lsi05G021660 vs. TrEMBL
Match: A0A0A0L3Q8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118730 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.5e-79
Identity = 150/158 (94.94%), Postives = 155/158 (98.10%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNEN 60
           MTRLFRSKSCGHVRV+EFKPPPPPP+SYYDSDDEEEEEEEEEEE+DDYYGDGV I VNEN
Sbjct: 1   MTRLFRSKSCGHVRVSEFKPPPPPPSSYYDSDDEEEEEEEEEEEDDDYYGDGVGIKVNEN 60

Query: 61  GYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120
           G+GLVLRNSVCDSDE+KQEGATR SNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI
Sbjct: 61  GFGLVLRNSVCDSDEEKQEGATRQSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120

Query: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA
Sbjct: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 158

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BLAST of Lsi05G021660 vs. TrEMBL
Match: B9I928_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09940g PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.6e-35
Identity = 88/158 (55.70%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNEN 60
           MTRLFRSKSCG V + E    PPP   ++ +  E+ EE+E+E++E++ Y D     ++  
Sbjct: 1   MTRLFRSKSCGLVGLTESNSAPPPSPFFHRNGTEDGEEDEDEDDEEELYSDASGNPISTP 60

Query: 61  GYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120
             G   R     S+        R+ N+  +F ILD+LVTALRKSLVTCSVE +DVSSMDI
Sbjct: 61  FIGS--REGTGGSERG------RNGNSNKEFAILDVLVTALRKSLVTCSVEREDVSSMDI 120

Query: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           S P  VRHVSHVTFDRFNGFLGLPTEFEPEVP +VPSA
Sbjct: 121 SWPTEVRHVSHVTFDRFNGFLGLPTEFEPEVPCKVPSA 150

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BLAST of Lsi05G021660 vs. TrEMBL
Match: A0A067K9D9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14205 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-34
Identity = 95/170 (55.88%), Postives = 108/170 (63.53%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFK--PPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDG------ 60
           MTRLFRSKSCG V + EF   PPP P     DSD+EE EEE++EEE  D   DG      
Sbjct: 1   MTRLFRSKSCGLVGLPEFNSCPPPSPLCRQNDSDEEENEEEDDEEEYKDEDFDGGLTNPI 60

Query: 61  ----VAIGVNENGYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTC 120
               ++ G    G G                G  R  +  NQF ILDIL+TALRKSLVTC
Sbjct: 61  STPFISPGSRFGGRG----------------GNGRGRHGSNQFAILDILMTALRKSLVTC 120

Query: 121 SVEPDDVSSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           SVE +D+SSMDIS P +VRHVSHVTFDRFNGFLGLPTEFEPE+  +VPSA
Sbjct: 121 SVEREDISSMDISWPTDVRHVSHVTFDRFNGFLGLPTEFEPEISRKVPSA 154

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BLAST of Lsi05G021660 vs. TrEMBL
Match: M5X2U3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004698mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.5e-34
Identity = 96/170 (56.47%), Postives = 109/170 (64.12%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYY------DSDDEEEEEEEEEEEEDDYYGD-GV 60
           M RLFRSKSC  V + EF   PP P S++      D +DEEEEEEEEEE E+  Y D G 
Sbjct: 1   MARLFRSKSCHLVGLTEFNIAPPSPFSHHHNNKDVDGEDEEEEEEEEEEMEELEYEDLGY 60

Query: 61  AIGVNENGYGLVLRNSVCDSDEDKQEGATRHSNNG----NQFPILDILVTALRKSLVTCS 120
              V  N            +     +G   H++NG    NQF +LDILV ALRKSL+TCS
Sbjct: 61  EDEVQNNPMSAPFLYPTSRA-HGSNKGRDFHAHNGHQQQNQFAVLDILVAALRKSLITCS 120

Query: 121 VEPDDV-SSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           VE DDV SS+DISSP  VRHVSHVTFDRFNGFLGLPTE EPEVP + PSA
Sbjct: 121 VERDDVASSIDISSPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSA 169

[Close]

BLAST of Lsi05G021660 vs. TrEMBL
Match: A0A061DSB2_THECC (Rho GTPase activating protein with PAK-box/P21-Rho-binding domain OS=Theobroma cacao GN=TCM_005065 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 90/164 (54.88%), Postives = 106/164 (64.63%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPP------TSYYDSDDEEEEEEEEEEEEDDYYGDGVA 60
           MT LFRSKSCG V + EF   PP P      T+  ++++EEEEEE EE+EE++   DG  
Sbjct: 1   MTGLFRSKSCGLVGLTEFNDAPPSPFFHQTKTNNEEANEEEEEEEFEEDEEEENDSDGNP 60

Query: 61  IGVNENGYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDD 120
           I         +   S     E +   +T  S + NQ P LDIL   LRKSLVTCSV+ +D
Sbjct: 61  IATTP----FISPTSRFRGSEGRNSNST--SKDNNQLPFLDILAALLRKSLVTCSVDTND 120

Query: 121 VSSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           VSSMDIS P  VRHVSHVTFDRFNGFLGLPTE EP+VP RVPSA
Sbjct: 121 VSSMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPDVPRRVPSA 158

[Close]

BLAST of Lsi05G021660 vs. TAIR10
Match: AT2G46710.1 (AT2G46710.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 68/163 (41.72%), Postives = 87/163 (53.37%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYD-SDDEEEEEEEEEEEEDDYYGDGVAIGVNE 60
           MT   RSKS G +   EFKP  P P  Y +  +D++E EE       DYY     +  + 
Sbjct: 1   MTNFSRSKSTGTIGFPEFKPTRPGPDKYENIHNDDDEYEEGHSTTSTDYYDASTPLSSHA 60

Query: 61  NGYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLV-TCSVE---PDDV 120
           +  G                    + +   Q  ++D+L   LRKSLV +C++E    D V
Sbjct: 61  SRSG--------------------NGSGSGQLTVVDLLAAVLRKSLVMSCAMERGEDDVV 120

Query: 121 SSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           +SMDI  P  V+HVSHVTFDRFNGFLGLP+E EPEVP R PSA
Sbjct: 121 ASMDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSA 143

[Close]

BLAST of Lsi05G021660 vs. TAIR10
Match: AT5G22400.1 (AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain)

HSP 1 Score: 94.4 bits (233), Expect = 6.9e-20
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 79  EGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDISSPVNVRHVSHVTFDRFN 138
           +G        +Q  +L +LV   R+SL++C     ++ SM+I  P NVRHV+HVTFDRFN
Sbjct: 76  DGGEEDDGGEDQISLLALLVAIFRRSLISCKSNRRELCSMEIGWPTNVRHVAHVTFDRFN 135

Query: 139 GFLGLPTEFEPEVPTRVPSA 159
           GFLGLP EFEPEVP R PSA
Sbjct: 136 GFLGLPVEFEPEVPRRAPSA 155

[Close]

BLAST of Lsi05G021660 vs. TAIR10
Match: AT3G11490.1 (AT3G11490.1 rac GTPase activating protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 72  DSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDISSPVNVRHVSH 131
           + +E+++E + +          L+ILV+A+R+S++   V  +D+ SM+I  P +VRHV+H
Sbjct: 45  EEEEEEEERSEKERERFELSSALEILVSAIRRSVIGGCVGEEDLCSMEIGVPTDVRHVAH 104

Query: 132 VTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           VTFDRF+GFLGLP EFEPEVP R PSA
Sbjct: 105 VTFDRFHGFLGLPVEFEPEVPRRAPSA 131

[Close]

BLAST of Lsi05G021660 vs. TAIR10
Match: AT4G03100.1 (AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain)

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-17
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1


Query: 67  RNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVE--PDD---------- 126
           R S  + +E++++       N  Q  +++ L+TALRKS+V+C V+   DD          
Sbjct: 22  RKSTAEEEEEEEQ-------NQQQLSLVEFLLTALRKSVVSCRVDNRQDDGGVGGGISSA 81

Query: 127 VSSMDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           V  M+I  P NVRH++HVTFDRF+GFLGLP E + E+P RVPSA
Sbjct: 82  VHHMEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIPCRVPSA 118

[Close]

BLAST of Lsi05G021660 vs. TAIR10
Match: AT1G08340.1 (AT1G08340.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1


Query: 118 MDISSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           MDI  P N+RHV+HVTFDRF+GFLGLP+EFEP+VP + PSA
Sbjct: 1   MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSA 41

[Close]

BLAST of Lsi05G021660 vs. NCBI nr
Match: gi|778688412|ref|XP_004134293.2| (PREDICTED: rho GTPase-activating protein 5-like [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.1e-79
Identity = 150/158 (94.94%), Postives = 155/158 (98.10%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNEN 60
           MTRLFRSKSCGHVRV+EFKPPPPPP+SYYDSDDEEEEEEEEEEE+DDYYGDGV I VNEN
Sbjct: 1   MTRLFRSKSCGHVRVSEFKPPPPPPSSYYDSDDEEEEEEEEEEEDDDYYGDGVGIKVNEN 60

Query: 61  GYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120
           G+GLVLRNSVCDSDE+KQEGATR SNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI
Sbjct: 61  GFGLVLRNSVCDSDEEKQEGATRQSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120

Query: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA
Sbjct: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 158

[Close]

BLAST of Lsi05G021660 vs. NCBI nr
Match: gi|700201255|gb|KGN56388.1| (hypothetical protein Csa_3G118730 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.1e-79
Identity = 150/158 (94.94%), Postives = 155/158 (98.10%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNEN 60
           MTRLFRSKSCGHVRV+EFKPPPPPP+SYYDSDDEEEEEEEEEEE+DDYYGDGV I VNEN
Sbjct: 1   MTRLFRSKSCGHVRVSEFKPPPPPPSSYYDSDDEEEEEEEEEEEDDDYYGDGVGIKVNEN 60

Query: 61  GYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120
           G+GLVLRNSVCDSDE+KQEGATR SNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI
Sbjct: 61  GFGLVLRNSVCDSDEEKQEGATRQSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120

Query: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA
Sbjct: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 158

[Close]

BLAST of Lsi05G021660 vs. NCBI nr
Match: gi|659074873|ref|XP_008437842.1| (PREDICTED: rho GTPase-activating protein 5 [Cucumis melo])

HSP 1 Score: 300.4 bits (768), Expect = 1.8e-78
Identity = 149/158 (94.30%), Postives = 154/158 (97.47%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNEN 60
           MTRLFRSKSCGHVRV+EFKPPPPPP+SYYDSDDEEEEEEEEEEE+DDYYGDGV I VNEN
Sbjct: 1   MTRLFRSKSCGHVRVSEFKPPPPPPSSYYDSDDEEEEEEEEEEEDDDYYGDGVGIKVNEN 60

Query: 61  GYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120
            +GLVLRNSVCDSDE+KQEGATR SNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI
Sbjct: 61  RFGLVLRNSVCDSDEEKQEGATRQSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120

Query: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA
Sbjct: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 158

[Close]

BLAST of Lsi05G021660 vs. NCBI nr
Match: gi|743790489|ref|XP_011038993.1| (PREDICTED: rho GTPase-activating protein 3-like isoform X2 [Populus euphratica])

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 89/158 (56.33%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNEN 60
           MTRLFRSKSCG V + E    PPP   ++ +  E+ EE+E+E++E++ Y D     ++  
Sbjct: 1   MTRLFRSKSCGLVGLTESNSAPPPTPFFHRNGTEDGEEDEDEDDEEESYSDASGNPISTP 60

Query: 61  GYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120
             G   R     SD        R+ N+  +F ILD+LVTALRKSLVTCSVE +DVSSMDI
Sbjct: 61  FIGS--REGTGGSDRG------RNGNSNKEFAILDVLVTALRKSLVTCSVEREDVSSMDI 120

Query: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           S P  VRHVSHVTFDRFNGFLGLPTEFEPEVP +VPSA
Sbjct: 121 SWPTEVRHVSHVTFDRFNGFLGLPTEFEPEVPCKVPSA 150

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BLAST of Lsi05G021660 vs. NCBI nr
Match: gi|743790493|ref|XP_011039002.1| (PREDICTED: rho GTPase-activating protein 3-like isoform X3 [Populus euphratica])

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-35
Identity = 89/158 (56.33%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 1   MTRLFRSKSCGHVRVAEFKPPPPPPTSYYDSDDEEEEEEEEEEEEDDYYGDGVAIGVNEN 60
           MTRLFRSKSCG V + E    PPP   ++ +  E+ EE+E+E++E++ Y D     ++  
Sbjct: 1   MTRLFRSKSCGLVGLTESNSAPPPTPFFHRNGTEDGEEDEDEDDEEESYSDASGNPISTP 60

Query: 61  GYGLVLRNSVCDSDEDKQEGATRHSNNGNQFPILDILVTALRKSLVTCSVEPDDVSSMDI 120
             G   R     SD        R+ N+  +F ILD+LVTALRKSLVTCSVE +DVSSMDI
Sbjct: 61  FIGS--REGTGGSDRG------RNGNSNKEFAILDVLVTALRKSLVTCSVEREDVSSMDI 120

Query: 121 SSPVNVRHVSHVTFDRFNGFLGLPTEFEPEVPTRVPSA 159
           S P  VRHVSHVTFDRFNGFLGLPTEFEPEVP +VPSA
Sbjct: 121 SWPTEVRHVSHVTFDRFNGFLGLPTEFEPEVPCKVPSA 150

The following BLAST results are available for this feature:

BLAST of Lsi05G021660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RGAP3_ARATH	3.5e-21	41.72	Rho GTPase-activating protein 3 OS=Arabidopsis thaliana GN=ROPGAP3 PE=2 SV=1	[more]
RGAP1_ARATH	1.2e-18	53.75	Rho GTPase-activating protein 1 OS=Arabidopsis thaliana GN=ROPGAP1 PE=2 SV=1	[more]
RGAP4_ARATH	3.6e-18	49.43	Rho GTPase-activating protein 4 OS=Arabidopsis thaliana GN=ROPGAP4 PE=2 SV=1	[more]
RGAP2_ARATH	5.7e-16	44.23	Rho GTPase-activating protein 2 OS=Arabidopsis thaliana GN=ROPGAP2 PE=1 SV=1	[more]
RGAP5_ARATH	2.3e-12	73.17	Rho GTPase-activating protein 5 OS=Arabidopsis thaliana GN=ROPGAP5 PE=2 SV=1	[more]

BLAST of Lsi05G021660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Q8_CUCSA	1.5e-79	94.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118730 PE=4 SV=1	[more]
B9I928_POPTR	8.6e-35	55.70	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09940g PE=4 SV=1	[more]
A0A067K9D9_JATCU	2.5e-34	55.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14205 PE=4 SV=1	[more]
M5X2U3_PRUPE	9.5e-34	56.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004698mg PE=4 SV=1	[more]
A0A061DSB2_THECC	1.6e-33	54.88	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain OS=Theobroma c...	[more]

BLAST of Lsi05G021660 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46710.1	2.0e-22	41.72	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain	[more]
AT5G22400.1	6.9e-20	53.75	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain	[more]
AT3G11490.1	2.0e-19	49.43	rac GTPase activating protein	[more]
AT4G03100.1	3.2e-17	44.23	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain	[more]
AT1G08340.1	1.3e-13	73.17	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain	[more]

BLAST of Lsi05G021660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688412\|ref\|XP_004134293.2\|	2.1e-79	94.94	PREDICTED: rho GTPase-activating protein 5-like [Cucumis sativus]	[more]
gi\|700201255\|gb\|KGN56388.1\|	2.1e-79	94.94	hypothetical protein Csa_3G118730 [Cucumis sativus]	[more]
gi\|659074873\|ref\|XP_008437842.1\|	1.8e-78	94.30	PREDICTED: rho GTPase-activating protein 5 [Cucumis melo]	[more]
gi\|743790489\|ref\|XP_011038993.1\|	5.5e-35	56.33	PREDICTED: rho GTPase-activating protein 3-like isoform X2 [Populus euphratica]	[more]
gi\|743790493\|ref\|XP_011039002.1\|	5.5e-35	56.33	PREDICTED: rho GTPase-activating protein 3-like isoform X3 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000095	CRIB_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009531	secondary cell wall
cellular_component	GO:0071944	cell periphery
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G021660.1	Lsi05G021660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000095	CRIB domain	GENE3D	G3DSA:3.90.810.10		coord: 118..148 score: 1.
IPR000095	CRIB domain	PFAM	PF00786	PBD	coord: 119..146 score: 2.
IPR000095	CRIB domain	SMART	SM00285	PBD_5	coord: 120..154 score: 2.
IPR000095	CRIB domain	PROFILE	PS50108	CRIB	coord: 120..133 score: 7
None	No IPR available	PANTHER	PTHR23177	MKIAA1688 PROTEIN	coord: 73..158 score: 1.5
None	No IPR available	PANTHER	PTHR23177:SF24	RHO GTPASE-ACTIVATING PROTEIN 3-RELATED	coord: 73..158 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G021660	Csa3G118730	Cucumber (Chinese Long) v2	culsiB209
Lsi05G021660	CSPI03G07580	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G021660	Cucsa.259580	Cucumber (Gy14) v1	cgylsiB415
Lsi05G021660	CmaCh06G009890	Cucurbita maxima (Rimu)	cmalsiB760
Lsi05G021660	CmoCh06G010140	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G021660	Cla021119	Watermelon (97103) v1	lsiwmB365
Lsi05G021660	MELO3C005990	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G021660	ClCG05G000520	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G021660	MELO3C005990.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G021660	Cla97C05G080540	Watermelon (97103) v2	lsiwmbB333
Lsi05G021660	Bhi01G000398	Wax gourd	lsiwgoB433
Lsi05G021660	Cp4.1LG08g00660	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G021660	Cp4.1LG03g16020	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G021660	CsGy3G007720	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G021660	Carg25719	Silver-seed gourd	carlsiB110
Lsi05G021660	Carg20916	Silver-seed gourd	carlsiB907
Lsi05G021660	CsaV3_3G007720	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G021660	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G021660	Cucurbita moschata (Rifu)	cmolsiB233