Lsi05G021460 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G021460
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Receptor-like kinase
Location	chr05 : 28236996 .. 28239061 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTACATGCTTTAAGGAACCATATTCAACACTTGCTTGAGTATAAACAACATGAACATTCTCCTTTTACATGAGAGCAAAAAAATAATATTGATTTGAACGTGTGAAGAGGAGTACAATACTTGCACAGTCTTACTCAACAAAGATTAATCCATAGAGATTTGATGTCTTCCAACATACTATTGGACAATGACATGAGAGGCAAAGTATTTGACTTTGACTTAGTAAAAAATGCACCAGAAGAGCAATACTCCATGGAGACACAAGTGTATGTAACTTCTAGCTATGTAACTCTTGAATATGCAGGTAAATAATTGAATTTATTTATTTTTATTATTATGACTATTGCTATTTTCCTTTTAATTAGTTTATTCAATATTTTTCTTAATACTAACCGAAAGAGTGAGCACGAAGGTGGATATTTTCGCCTTTGTTAAGATCATTTTGATGGAGCTCATCACTAGAAGGAACATTGGAAACGAGAACATCTACCATGTACTATGATTGGGAAAATTAACTCATTTTAATGTTAATGTTAGTGTTGCCCTAAAATTGTATCCTTATCCCAAATTTTGACTGCAATTATATGAATTAACGAATCCTCCCTATACCTCTCTGTGTTTCAGTATTTTTCTGATAATTTGTTCTTTTAATTTTTTTAGTTTTCGTAAATTAAAGCTTAAACTAAGTAGCTTTCTTTTTTTAATTAAAAAATAAATAAAAAAGAACATGAAAGTAAAGTAGCAAACTGGTAGTCCCCTTCAAAGTAGCTAACATAATTTTCTTCGCTAAGTATCCTTATTTAGTTTTATTATGTTTTAAATTATTCTATTTAGCTCGTATTCTTTCTTTATATTTGATAATATTATCACTCTAAAATAATATATTTATTCTACTTTATGAAAGTTTTATAACTCATCGGAACTAAATTTTAACTTTTCCTAAACCATAAGGGACCAAATTTGTAATTTAACATTTTTTTTTTAAAAAAAAAAAAACAGTACAAACTTTTCTTTCCTTTTATGCAATTGAGGGCATACACGAGTTACATGTTATTATAGCTTAGTAACAAATTAGTTAAATGTCCTAAAAAAAACAAATTAATTTTAAAAAATTGTGTTAAATGAAATAGATTTTATGTTATAATTTCAAATTTGTCAAATATAATCTTTCGTATTATTGGTAGTATTTTAAGTATTTATTAGAATGTTTCTACCAAAATACAATGTAATAGCTTCCATCTAATATAATTTAAATTCTTTTTTTTTTCCTTCATAAAAATCGTTTCTCGTTAATGAAATATATATTCTTGATTCTATTTTTATTTTGGTATTAAATGGGAAAAAAAAAAATTCTTCTTTTTTGTTTTTCCAGCAACGATTTTACAGATTTTTTTTTCCTTCCATTTTCTTTTTTTCCCCTTTGCTCATTTACGTTTCTTGAATGCCAATGTCAAATTTTCTTTCTTTATTTTGTTATTCATTTTCGGTTTTATGATTTTCTGAATACCTTGCATTTGAAAATATAAGGACATAAGAATCAGTTATTCACTTATATACCCTTGCATTTAATTTTCATATCTAATTGTTTCTTATATATATACTTCATATACATATACACTCATGTTTAATTTATATAATTATTTACATTTATATAAGTAATAATTTAAATCATTTACGAATGCTAAATAGAGGTCACTAAAATAAGAGGGATAATTATGTGGTTTCTTTAGTGCTTGTCCAGTTTCTGTGTTATTAACCCAAGTTGGATTATTTGCTTTAATTTGCAATATTGACTTTTTGTAATGTAAATATAATAGCACATGATAAAACAAATTGGATATTGTTACTATATATATATACATATATCTTAAGAATATTTTATATATATCTCAATTTTTTAACCATATTTTCAATCATCTACATTATATACCAACATAGAAAATAGATACAACAAGTATATATTAAAATGTTATTTGTGATAATCACAATCAATATAACATATAACTTATAACAATGTATATAATAGGAAGAAATTAGACCATTTTGTAATGCGAAAACTTAA

mRNA sequence

ATGAGAGTACAATACTTGCACAGTCTTACTCAACAAAGATTAATCCATAGAGATTTGATGTCTTCCAACATACTATTGGACAATGACATGAGAGGCAAAGTATTTGACTTTGACTTAGTAAAAAATGCACCAGAAGAGCAATACTCCATGGAGACACAAGTGTATGTAACTTCTAGCTATGTAACTCTTGAATATGCAGTTTATTCAATATTTTTCTTAATACTAACCGAAAGAGTGAGCACGAAGGTGGATATTTTCGCCTTTGTTAAGATCATTTTGATGGAGCTCATCACTAGAAGGAACATTGGAAACGAGAACATCTACCATGAAGAAATTAGACCATTTTGTAATGCGAAAACTTAA

Coding sequence (CDS)

ATGAGAGTACAATACTTGCACAGTCTTACTCAACAAAGATTAATCCATAGAGATTTGATGTCTTCCAACATACTATTGGACAATGACATGAGAGGCAAAGTATTTGACTTTGACTTAGTAAAAAATGCACCAGAAGAGCAATACTCCATGGAGACACAAGTGTATGTAACTTCTAGCTATGTAACTCTTGAATATGCAGTTTATTCAATATTTTTCTTAATACTAACCGAAAGAGTGAGCACGAAGGTGGATATTTTCGCCTTTGTTAAGATCATTTTGATGGAGCTCATCACTAGAAGGAACATTGGAAACGAGAACATCTACCATGAAGAAATTAGACCATTTTGTAATGCGAAAACTTAA

Protein sequence

MRVQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVTLEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHEEIRPFCNAKT

Homology

[Close]

BLAST of Lsi05G021460 vs. Swiss-Prot
Match: TMK4_ARATH (Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-19
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAP+ +YS+ET++  T  Y+ 
Sbjct: 692 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLA 751

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME++T R   ++++  E
Sbjct: 752 PEYAA--------TGRVTTKVDVYAF-GVVLMEILTGRKALDDSLPDE 790

[Close]

BLAST of Lsi05G021460 vs. Swiss-Prot
Match: TMK3_ARATH (Receptor-like kinase TMK3 OS=Arabidopsis thaliana GN=TMK3 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-17
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLH+L  Q  IHRDL  SNILL +DMR KV DF LV+ AP+ +YS+ET+V  T  Y+ 
Sbjct: 699 VEYLHTLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPDGKYSIETRVAGTFGYLA 758

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNE 106
            EYAV        T RV+TKVDIF+ + +ILMELIT R   +E
Sbjct: 759 PEYAV--------TGRVTTKVDIFS-LGVILMELITGRKALDE 792

[Close]

BLAST of Lsi05G021460 vs. Swiss-Prot
Match: TMK1_ARATH (Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-17
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLH L  Q  IHRDL  SNILL +DMR KV DF LV+ APE + S+ET++  T  Y+ 
Sbjct: 702 VEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLA 761

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHEEI 113
            EYAV        T RV+TKVD+++F  +ILMELIT R   +E+   E I
Sbjct: 762 PEYAV--------TGRVTTKVDVYSF-GVILMELITGRKSLDESQPEESI 802

[Close]

BLAST of Lsi05G021460 vs. Swiss-Prot
Match: TMK2_ARATH (Receptor-like kinase TMK2 OS=Arabidopsis thaliana GN=TMK2 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLH+L  Q  IHRDL  SNILL +DM  KV DF LV+ APE   S+ET++  T  Y+ 
Sbjct: 661 VEYLHTLAHQSFIHRDLKPSNILLGDDMHAKVADFGLVRLAPEGTQSIETKIAGTFGYLA 720

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRR 101
            EYAV        T RV+TKVD+++F  +ILMEL+T R
Sbjct: 721 PEYAV--------TGRVTTKVDVYSF-GVILMELLTGR 749

[Close]

BLAST of Lsi05G021460 vs. Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 5   YLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVTLE 64
           YLH   Q  +IHRD+ +SNILLD     KV DF L K  PE    M T+V  T  YV  E
Sbjct: 399 YLHYGAQPSIIHRDIKASNILLDERFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPE 458

Query: 65  YAVYSIFFLILTERVSTKVDIFAFVKIILMELITRR 101
           YA+Y         +++ K D+++F  ++L+EL++RR
Sbjct: 459 YALYG--------QLTEKSDVYSF-GVVLLELLSRR 485

[Close]

BLAST of Lsi05G021460 vs. TrEMBL
Match: A0A061EJT4_THECC (Leucine-rich repeat protein kinase family protein isoform 1 OS=Theobroma cacao GN=TCM_020205 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-18
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 688 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 747

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHEE 112
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E+
Sbjct: 748 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDEK 787

[Close]

BLAST of Lsi05G021460 vs. TrEMBL
Match: A0A0B0MNR1_GOSAR (Putative receptor protein kinase TMK1 OS=Gossypium arboreum GN=F383_27280 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-18
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 686 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 745

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E
Sbjct: 746 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDE 784

[Close]

BLAST of Lsi05G021460 vs. TrEMBL
Match: A0A0D2RMV2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G151900 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-18
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 686 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 745

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E
Sbjct: 746 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDE 784

[Close]

BLAST of Lsi05G021460 vs. TrEMBL
Match: A0A0D2UUG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G151900 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-18
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 630 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 689

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E
Sbjct: 690 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDE 728

[Close]

BLAST of Lsi05G021460 vs. TrEMBL
Match: A0A078JBR3_BRANA (BnaCnng38030D protein OS=Brassica napus GN=BnaCnng38030D PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL SSNILL +DMR KV DF LVKNAP+ +YS+ET++  T  Y+ 
Sbjct: 674 VEYLHSLAQQSFIHRDLKSSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLA 733

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHEE 112
            EYA         T RV+TKVD++AF  ++LME++T R   ++++  E+
Sbjct: 734 PEYAA--------TGRVTTKVDVYAF-GVVLMEMLTGRKALDDSLPDEK 773

[Close]

BLAST of Lsi05G021460 vs. TAIR10
Match: AT3G23750.1 (AT3G23750.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-20
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAP+ +YS+ET++  T  Y+ 
Sbjct: 692 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLA 751

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME++T R   ++++  E
Sbjct: 752 PEYAA--------TGRVTTKVDVYAF-GVVLMEILTGRKALDDSLPDE 790

[Close]

BLAST of Lsi05G021460 vs. TAIR10
Match: AT2G01820.1 (AT2G01820.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 90.1 bits (222), Expect = 9.9e-19
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLH+L  Q  IHRDL  SNILL +DMR KV DF LV+ AP+ +YS+ET+V  T  Y+ 
Sbjct: 699 VEYLHTLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPDGKYSIETRVAGTFGYLA 758

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNE 106
            EYAV        T RV+TKVDIF+ + +ILMELIT R   +E
Sbjct: 759 PEYAV--------TGRVTTKVDIFS-LGVILMELITGRKALDE 792

[Close]

BLAST of Lsi05G021460 vs. TAIR10
Match: AT1G66150.1 (AT1G66150.1 transmembrane kinase 1)

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-18
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLH L  Q  IHRDL  SNILL +DMR KV DF LV+ APE + S+ET++  T  Y+ 
Sbjct: 702 VEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLA 761

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHEEI 113
            EYAV        T RV+TKVD+++F  +ILMELIT R   +E+   E I
Sbjct: 762 PEYAV--------TGRVTTKVDVYSF-GVILMELITGRKSLDESQPEESI 802

[Close]

BLAST of Lsi05G021460 vs. TAIR10
Match: AT1G24650.1 (AT1G24650.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-17
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLH+L  Q  IHRDL  SNILL +DM  KV DF LV+ APE   S+ET++  T  Y+ 
Sbjct: 661 VEYLHTLAHQSFIHRDLKPSNILLGDDMHAKVADFGLVRLAPEGTQSIETKIAGTFGYLA 720

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRR 101
            EYAV        T RV+TKVD+++F  +ILMEL+T R
Sbjct: 721 PEYAV--------TGRVTTKVDVYSF-GVILMELLTGR 749

[Close]

BLAST of Lsi05G021460 vs. TAIR10
Match: AT2G48010.1 (AT2G48010.1 receptor-like kinase in in flowers 3)

HSP 1 Score: 64.3 bits (155), Expect = 5.8e-11
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 5   YLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVTLE 64
           YLH   Q  +IHRD+ +SNILLD     KV DF L K  PE    M T+V  T  YV  E
Sbjct: 399 YLHYGAQPSIIHRDIKASNILLDERFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPE 458

Query: 65  YAVYSIFFLILTERVSTKVDIFAFVKIILMELITRR 101
           YA+Y         +++ K D+++F  ++L+EL++RR
Sbjct: 459 YALYG--------QLTEKSDVYSF-GVVLLELLSRR 485

[Close]

BLAST of Lsi05G021460 vs. NCBI nr
Match: gi|590656160|ref|XP_007034190.1| (Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 688 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 747

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHEE 112
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E+
Sbjct: 748 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDEK 787

[Close]

BLAST of Lsi05G021460 vs. NCBI nr
Match: gi|823245814|ref|XP_012455577.1| (PREDICTED: probable receptor protein kinase TMK1 [Gossypium raimondii])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 686 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 745

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E
Sbjct: 746 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDE 784

[Close]

BLAST of Lsi05G021460 vs. NCBI nr
Match: gi|728820379|gb|KHG03733.1| (putative receptor protein kinase TMK1 [Gossypium arboreum])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 686 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 745

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E
Sbjct: 746 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDE 784

[Close]

BLAST of Lsi05G021460 vs. NCBI nr
Match: gi|763805043|gb|KJB71981.1| (hypothetical protein B456_011G151900 [Gossypium raimondii])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAPE +YS+ET++  T  Y+ 
Sbjct: 630 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPEGKYSVETRLAGTFGYLA 689

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVD++AF  ++LME+IT R   +E +  E
Sbjct: 690 PEYAA--------TGRVTTKVDVYAF-GVVLMEIITGRKALDETLPDE 728

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BLAST of Lsi05G021460 vs. NCBI nr
Match: gi|351721808|ref|NP_001236710.1| (receptor-like kinase RHG4 [Glycine max])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 3   VQYLHSLTQQRLIHRDLMSSNILLDNDMRGKVFDFDLVKNAPEEQYSMETQVYVTSSYVT 62
           V+YLHSL QQ  IHRDL  SNILL +DMR KV DF LVKNAP+ +YS+ET++  T  Y+ 
Sbjct: 658 VEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLA 717

Query: 63  LEYAVYSIFFLILTERVSTKVDIFAFVKIILMELITRRNIGNENIYHE 111
            EYA         T RV+TKVDI+AF  I+LMELIT R   ++ +  E
Sbjct: 718 PEYAA--------TGRVTTKVDIYAF-GIVLMELITGRKALDDTVPDE 756

The following BLAST results are available for this feature:

BLAST of Lsi05G021460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMK4_ARATH	5.5e-19	50.93	Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1	[more]
TMK3_ARATH	1.8e-17	54.37	Receptor-like kinase TMK3 OS=Arabidopsis thaliana GN=TMK3 PE=2 SV=1	[more]
TMK1_ARATH	6.7e-17	50.91	Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1	[more]
TMK2_ARATH	1.3e-15	52.04	Receptor-like kinase TMK2 OS=Arabidopsis thaliana GN=TMK2 PE=2 SV=1	[more]
RKF3_ARATH	1.0e-09	41.67	Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis t...	[more]

BLAST of Lsi05G021460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EJT4_THECC	7.2e-18	53.21	Leucine-rich repeat protein kinase family protein isoform 1 OS=Theobroma cacao G...	[more]
A0A0B0MNR1_GOSAR	9.4e-18	53.70	Putative receptor protein kinase TMK1 OS=Gossypium arboreum GN=F383_27280 PE=3 S...	[more]
A0A0D2RMV2_GOSRA	9.4e-18	53.70	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G151900 PE=3 SV=1	[more]
A0A0D2UUG7_GOSRA	9.4e-18	53.70	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G151900 PE=3 SV=1	[more]
A0A078JBR3_BRANA	1.2e-17	51.38	BnaCnng38030D protein OS=Brassica napus GN=BnaCnng38030D PE=3 SV=1	[more]

BLAST of Lsi05G021460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23750.1	3.1e-20	50.93	Leucine-rich repeat protein kinase family protein	[more]
AT2G01820.1	9.9e-19	54.37	Leucine-rich repeat protein kinase family protein	[more]
AT1G66150.1	3.8e-18	50.91	transmembrane kinase 1	[more]
AT1G24650.1	7.1e-17	52.04	Leucine-rich repeat protein kinase family protein	[more]
AT2G48010.1	5.8e-11	41.67	receptor-like kinase in in flowers 3	[more]

BLAST of Lsi05G021460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590656160\|ref\|XP_007034190.1\|	1.0e-17	53.21	Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]	[more]
gi\|823245814\|ref\|XP_012455577.1\|	1.3e-17	53.70	PREDICTED: probable receptor protein kinase TMK1 [Gossypium raimondii]	[more]
gi\|728820379\|gb\|KHG03733.1\|	1.3e-17	53.70	putative receptor protein kinase TMK1 [Gossypium arboreum]	[more]
gi\|763805043\|gb\|KJB71981.1\|	1.3e-17	53.70	hypothetical protein B456_011G151900 [Gossypium raimondii]	[more]
gi\|351721808\|ref\|NP_001236710.1\|	1.8e-17	54.63	receptor-like kinase RHG4 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004672	protein kinase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011009	Kinase-like_dom_sf
IPR000719	Prot_kinase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G021460.1	Lsi05G021460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 3..104 score: 3.9
IPR000719	Protein kinase domain	PROFILE	PS50011	PROTEIN_KINASE_DOM	coord: 1..120 score: 16
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 3..102 score: 4.59
None	No IPR available	GENE3D	G3DSA:1.10.510.10		coord: 3..111 score: 1.0
None	No IPR available	PANTHER	PTHR27001	FAMILY NOT NAMED	coord: 3..100 score: 1.5
None	No IPR available	PANTHER	PTHR27001:SF172	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MYM9	coord: 3..100 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G021460	Bottle gourd (USVL1VR-Ls)	lsilsiB014
Lsi05G021460	Cucumber (Gy14) v1	cgylsiB349
Lsi05G021460	Cucumber (Gy14) v1	cgylsiB415
Lsi05G021460	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G021460	Cucurbita maxima (Rimu)	cmalsiB760
Lsi05G021460	Cucurbita maxima (Rimu)	cmalsiB770
Lsi05G021460	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G021460	Cucurbita moschata (Rifu)	cmolsiB557
Lsi05G021460	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G021460	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G021460	Cucurbita pepo (Zucchini)	cpelsiB626
Lsi05G021460	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G021460	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G021460	Wild cucumber (PI 183967)	cpilsiB382
Lsi05G021460	Cucumber (Chinese Long) v2	culsiB209
Lsi05G021460	Cucumber (Chinese Long) v2	culsiB378
Lsi05G021460	Melon (DHL92) v3.5.1	lsimeB336
Lsi05G021460	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G021460	Watermelon (Charleston Gray)	lsiwcgB325
Lsi05G021460	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G021460	Watermelon (97103) v1	lsiwmB365
Lsi05G021460	Watermelon (97103) v1	lsiwmB375
Lsi05G021460	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G021460	Cucumber (Gy14) v2	cgyblsiB345
Lsi05G021460	Melon (DHL92) v3.6.1	lsimedB353
Lsi05G021460	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G021460	Silver-seed gourd	carlsiB110
Lsi05G021460	Silver-seed gourd	carlsiB907
Lsi05G021460	Cucumber (Chinese Long) v3	cuclsiB228
Lsi05G021460	Cucumber (Chinese Long) v3	cuclsiB402
Lsi05G021460	Watermelon (97103) v2	lsiwmbB319
Lsi05G021460	Watermelon (97103) v2	lsiwmbB333
Lsi05G021460	Wax gourd	lsiwgoB419
Lsi05G021460	Wax gourd	lsiwgoB433