Lsi05G018080 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G018080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 25338050 .. 25338256 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG

mRNA sequence

ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG

Coding sequence (CDS)

ATGGCTCGACCCGGAATTTTCCTCTGTTTTTTGGCTTTGATCATAACCAGTAGCTTTGCTCTGCAGCAGCCCAACGCCGGCGGCGGCACGAAAACTATTACCGGACGAGGCGGCGGTGGCGGTGGCGGAGGTGGATCGAGTAGTGGTCCGGGTACGGGCTCTGGTGAAGGGCATGGGTCGGGAAGAGGTGGTGGGTCGGGTCGATAG

Protein sequence

MARPGIFLCFLALIITSSFALQQPNAGGGTKTITGRGGGGGGGGGSSSGPGTGSGEGHGSGRGGGSGR
Homology
[Close]
BLAST of Lsi05G018080 vs. TrEMBL
Match: A0A0A0L9I6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133220 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-09
Identity = 58/74 (78.38%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MARPGIFLCFLALIITSSFALQQP-NAG-GGTKTIT---GRGGGGGGGGGSSSGPGTGSG 60
          MARPGIFLC LALII SSFA QQP N G G TKTIT   G GGGGGGGGGSSSGP TGSG
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60

Query: 61 EGHGSGR-GGGSGR 69
           G GSG  GGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74

[Close]
BLAST of Lsi05G018080 vs. NCBI nr
Match: gi|700201638|gb|KGN56771.1| (hypothetical protein Csa_3G133220 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-09
Identity = 58/74 (78.38%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MARPGIFLCFLALIITSSFALQQP-NAG-GGTKTIT---GRGGGGGGGGGSSSGPGTGSG 60
          MARPGIFLC LALII SSFA QQP N G G TKTIT   G GGGGGGGGGSSSGP TGSG
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60

Query: 61 EGHGSGR-GGGSGR 69
           G GSG  GGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74

The following BLAST results are available for this feature:
BLAST of Lsi05G018080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G018080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9I6_CUCSA5.9e-0978.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133220 PE=4 SV=1[more]
BLAST of Lsi05G018080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G018080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201638|gb|KGN56771.1|8.4e-0978.38hypothetical protein Csa_3G133220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G018080.1Lsi05G018080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G018080Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G018080Bottle gourd (USVL1VR-Ls)lsilsiB156
Lsi05G018080Cucumber (Gy14) v1cgylsiB226
Lsi05G018080Cucumber (Gy14) v1cgylsiB415
Lsi05G018080Cucurbita maxima (Rimu)cmalsiB245
Lsi05G018080Cucurbita maxima (Rimu)cmalsiB356
Lsi05G018080Cucurbita maxima (Rimu)cmalsiB487
Lsi05G018080Cucurbita maxima (Rimu)cmalsiB586
Lsi05G018080Cucurbita maxima (Rimu)cmalsiB764
Lsi05G018080Cucurbita maxima (Rimu)cmalsiB839
Lsi05G018080Cucurbita moschata (Rifu)cmolsiB233
Lsi05G018080Cucurbita moschata (Rifu)cmolsiB345
Lsi05G018080Cucurbita moschata (Rifu)cmolsiB471
Lsi05G018080Cucurbita moschata (Rifu)cmolsiB566
Lsi05G018080Cucurbita moschata (Rifu)cmolsiB757
Lsi05G018080Cucurbita moschata (Rifu)cmolsiB823
Lsi05G018080Cucurbita pepo (Zucchini)cpelsiB120
Lsi05G018080Cucurbita pepo (Zucchini)cpelsiB267
Lsi05G018080Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G018080Cucurbita pepo (Zucchini)cpelsiB617
Lsi05G018080Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G018080Wild cucumber (PI 183967)cpilsiB125
Lsi05G018080Wild cucumber (PI 183967)cpilsiB201
Lsi05G018080Wild cucumber (PI 183967)cpilsiB207
Lsi05G018080Cucumber (Chinese Long) v2culsiB127
Lsi05G018080Cucumber (Chinese Long) v2culsiB203
Lsi05G018080Cucumber (Chinese Long) v2culsiB209
Lsi05G018080Melon (DHL92) v3.5.1lsimeB358
Lsi05G018080Melon (DHL92) v3.5.1lsimeB360
Lsi05G018080Melon (DHL92) v3.5.1lsimeB378
Lsi05G018080Watermelon (Charleston Gray)lsiwcgB335
Lsi05G018080Watermelon (Charleston Gray)lsiwcgB343
Lsi05G018080Watermelon (Charleston Gray)lsiwcgB349
Lsi05G018080Watermelon (97103) v1lsiwmB360
Lsi05G018080Watermelon (97103) v1lsiwmB365
Lsi05G018080Watermelon (97103) v1lsiwmB382
Lsi05G018080Cucumber (Gy14) v2cgyblsiB115
Lsi05G018080Cucumber (Gy14) v2cgyblsiB196
Lsi05G018080Melon (DHL92) v3.6.1lsimedB375
Lsi05G018080Melon (DHL92) v3.6.1lsimedB396
Lsi05G018080Silver-seed gourdcarlsiB206
Lsi05G018080Silver-seed gourdcarlsiB210
Lsi05G018080Silver-seed gourdcarlsiB878
Lsi05G018080Silver-seed gourdcarlsiB983
Lsi05G018080Cucumber (Chinese Long) v3cuclsiB139
Lsi05G018080Cucumber (Chinese Long) v3cuclsiB220
Lsi05G018080Cucumber (Chinese Long) v3cuclsiB228
Lsi05G018080Watermelon (97103) v2lsiwmbB333
Lsi05G018080Watermelon (97103) v2lsiwmbB341
Lsi05G018080Watermelon (97103) v2lsiwmbB347
Lsi05G018080Wax gourdlsiwgoB421
Lsi05G018080Wax gourdlsiwgoB452
Lsi05G018080Wax gourdlsiwgoB462