Lsi05G016790 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGATGATTCACAGGAAGTAGATTCGAATTGGAAAAGCGAGCGTCAAATTTGCACCATCCAGAAAGCGAGTCACGGCTCACGGGCCCGTTTATCCCTTCCACTCAATTCACTTTCTTTCACCACTGTCATCACTCACGATGCTTCCTTTGCTGCAATTCATCGCCCTCCTGCTTCCCTTCATCTTCGTCTCCTCTTTTTCCACAGCCTTAGCTCACAATCATGAGGACCCAACAATCAGAACCATGGAGGCTTTCTCCGGGTACCCAGTTCACGAACCTCCCTCCTCTGTCTTCTCAAACCCCATTACTTCTCTGTCCGTTGATGCTGATATCTTAGTGAAACAGGTACGGAAGTCAAATGGATTTCAATCCTACAGGGTTTTAATCGGTTTTAATTATAAGTTAACTTAGTGAGTCCATTTGAAGGGTTCTCATTACTTGTTTTGCGGATTTGGGTATTTAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCGGTTACCAGGGTTCTTTACACTGAGAAGGATGTATTGGCACGAAGGCACGGACTCTGTCTATTCAGCTAA TGATGATTCACAGGAAGTAGATTCGAATTGGAAAAGCGAGCGTCAAATTTGCACCATCCAGAAAGCGAGTCACGGCTCACGGGCCCGTTTATCCCTTCCACTCAATTCACTTTCTTTCACCACTGTCATCACTCACGATGCTTCCTTTGCTGCAATTCATCGCCCTCCTGCTTCCCTTCATCTTCGTCTCCTCTTTTTCCACAGCCTTAGCTCACAATCATGAGGACCCAACAATCAGAACCATGGAGGCTTTCTCCGGGTACCCAGTTCACGAACCTCCCTCCTCTGTCTTCTCAAACCCCATTACTTCTCTGTCCGTTGATGCTGATATCTTAGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCGGTTACCAGGGTTCTTTACACTGAGAAGGATGTATTGGCACGAAGGCACGGACTCTGTCTATTCAGCTAA ATGCTTCCTTTGCTGCAATTCATCGCCCTCCTGCTTCCCTTCATCTTCGTCTCCTCTTTTTCCACAGCCTTAGCTCACAATCATGAGGACCCAACAATCAGAACCATGGAGGCTTTCTCCGGGTACCCAGTTCACGAACCTCCCTCCTCTGTCTTCTCAAACCCCATTACTTCTCTGTCCGTTGATGCTGATATCTTAGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCGGTTACCAGGGTTCTTTACACTGAGAAGGATGTATTGGCACGAAGGCACGGACTCTGTCTATTCAGCTAA MLPLLQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDADILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARRHGLCLFS
BLAST of Lsi05G016790 vs. Swiss-Prot
Match: UAH_ARATH (Ureidoglycolate hydrolase OS=Arabidopsis thaliana GN=UAH PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18 Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1
BLAST of Lsi05G016790 vs. Swiss-Prot
Match: UAH_ORYSJ (Probable ureidoglycolate hydrolase OS=Oryza sativa subsp. japonica GN=UAH PE=1 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
BLAST of Lsi05G016790 vs. TrEMBL
Match: A0A0A0LA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142980 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 1.1e-38 Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 1
BLAST of Lsi05G016790 vs. TrEMBL
Match: M5XRF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005238mg PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 5.5e-22 Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 1
BLAST of Lsi05G016790 vs. TrEMBL
Match: A0A068TT38_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026222001 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21 Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 1
BLAST of Lsi05G016790 vs. TrEMBL
Match: W9QEA9_9ROSA (N-carbamoyl-L-amino acid hydrolase OS=Morus notabilis GN=L484_016363 PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 6.1e-21 Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 1
BLAST of Lsi05G016790 vs. TrEMBL
Match: A0A061ENH7_THECC (N-carbamyl-L-amino acid amidohydrolase protein isoform 1 OS=Theobroma cacao GN=TCM_020797 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20 Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 1
BLAST of Lsi05G016790 vs. TAIR10
Match: AT5G43600.1 (AT5G43600.1 ureidoglycolate amidohydrolase) HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19 Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1
BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|659076236|ref|XP_008438571.1| (PREDICTED: ureidoglycolate hydrolase [Cucumis melo]) HSP 1 Score: 169.5 bits (428), Expect = 3.2e-39 Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 1
BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|449432610|ref|XP_004134092.1| (PREDICTED: ureidoglycolate hydrolase [Cucumis sativus]) HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38 Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 1
BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|645235758|ref|XP_008224417.1| (PREDICTED: ureidoglycolate hydrolase [Prunus mume]) HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22 Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 1
BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|596161135|ref|XP_007222929.1| (hypothetical protein PRUPE_ppa005238mg [Prunus persica]) HSP 1 Score: 111.7 bits (278), Expect = 7.9e-22 Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 1
BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|985464665|ref|XP_015389144.1| (PREDICTED: ureidoglycolate hydrolase isoform X3 [Citrus sinensis]) HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21 Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |