Lsi05G016790 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G016790
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionN-carbamyl-L-amino acid hydrolase family protein
Locationchr05 : 24382072 .. 24382644 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATGATTCACAGGAAGTAGATTCGAATTGGAAAAGCGAGCGTCAAATTTGCACCATCCAGAAAGCGAGTCACGGCTCACGGGCCCGTTTATCCCTTCCACTCAATTCACTTTCTTTCACCACTGTCATCACTCACGATGCTTCCTTTGCTGCAATTCATCGCCCTCCTGCTTCCCTTCATCTTCGTCTCCTCTTTTTCCACAGCCTTAGCTCACAATCATGAGGACCCAACAATCAGAACCATGGAGGCTTTCTCCGGGTACCCAGTTCACGAACCTCCCTCCTCTGTCTTCTCAAACCCCATTACTTCTCTGTCCGTTGATGCTGATATCTTAGTGAAACAGGTACGGAAGTCAAATGGATTTCAATCCTACAGGGTTTTAATCGGTTTTAATTATAAGTTAACTTAGTGAGTCCATTTGAAGGGTTCTCATTACTTGTTTTGCGGATTTGGGTATTTAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCGGTTACCAGGGTTCTTTACACTGAGAAGGATGTATTGGCACGAAGGCACGGACTCTGTCTATTCAGCTAA

mRNA sequence

TGATGATTCACAGGAAGTAGATTCGAATTGGAAAAGCGAGCGTCAAATTTGCACCATCCAGAAAGCGAGTCACGGCTCACGGGCCCGTTTATCCCTTCCACTCAATTCACTTTCTTTCACCACTGTCATCACTCACGATGCTTCCTTTGCTGCAATTCATCGCCCTCCTGCTTCCCTTCATCTTCGTCTCCTCTTTTTCCACAGCCTTAGCTCACAATCATGAGGACCCAACAATCAGAACCATGGAGGCTTTCTCCGGGTACCCAGTTCACGAACCTCCCTCCTCTGTCTTCTCAAACCCCATTACTTCTCTGTCCGTTGATGCTGATATCTTAGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCGGTTACCAGGGTTCTTTACACTGAGAAGGATGTATTGGCACGAAGGCACGGACTCTGTCTATTCAGCTAA

Coding sequence (CDS)

ATGCTTCCTTTGCTGCAATTCATCGCCCTCCTGCTTCCCTTCATCTTCGTCTCCTCTTTTTCCACAGCCTTAGCTCACAATCATGAGGACCCAACAATCAGAACCATGGAGGCTTTCTCCGGGTACCCAGTTCACGAACCTCCCTCCTCTGTCTTCTCAAACCCCATTACTTCTCTGTCCGTTGATGCTGATATCTTAGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCACCAGCCCCATCGGTTACCAGGGTTCTTTACACTGAGAAGGATGTATTGGCACGAAGGCACGGACTCTGTCTATTCAGCTAA

Protein sequence

MLPLLQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDADILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARRHGLCLFS
BLAST of Lsi05G016790 vs. Swiss-Prot
Match: UAH_ARATH (Ureidoglycolate hydrolase OS=Arabidopsis thaliana GN=UAH PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1

Query: 5   LQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDAD 64
           L  I+LLLP        ++LA   +  +IRTME FSGYP+HEP      N  +SLSVDA 
Sbjct: 13  LLLISLLLP--------SSLAQQQQHESIRTMEDFSGYPIHEPGQFGSINLASSLSVDAP 72

Query: 65  ILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARRH 100
            L  QI+ELS+FSD+P+PSVTRVLYT+KDV ARR+
Sbjct: 73  GLQNQIDELSSFSDAPSPSVTRVLYTDKDVSARRY 99

BLAST of Lsi05G016790 vs. Swiss-Prot
Match: UAH_ORYSJ (Probable ureidoglycolate hydrolase OS=Oryza sativa subsp. japonica GN=UAH PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1

Query: 34  RTMEAFSGYPV--HEPPSSVFSNPITSLSVDADILVKQIEELSTFSDSPAPSVTRVLYTE 93
           RTME F+G+P   +       S   +   VD+D L +QI+EL++FSDSP PSVTRVLY++
Sbjct: 42  RTMEEFAGFPASDYRGDGGGGSGGSSPFYVDSDGLQRQIDELASFSDSPVPSVTRVLYSD 101

Query: 94  KDVLARRH 100
           KDV ARR+
Sbjct: 102 KDVQARRY 109

BLAST of Lsi05G016790 vs. TrEMBL
Match: A0A0A0LA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142980 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-38
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 1

Query: 1  MLPLLQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLS 60
          MLPLLQ +ALLL FIF+SSFS ALAHNH+DPTIRTMEAFSGYPVHEP S  FS PITSLS
Sbjct: 1  MLPLLQLVALLLHFIFISSFSAALAHNHDDPTIRTMEAFSGYPVHEPSSHGFSTPITSLS 60

Query: 61 VDADILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARR 99
          VDAD LVKQIEELSTFSDSPAPSVTR+LYTEKDVLARR
Sbjct: 61 VDADTLVKQIEELSTFSDSPAPSVTRILYTEKDVLARR 98

BLAST of Lsi05G016790 vs. TrEMBL
Match: M5XRF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005238mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-22
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 1

Query: 5  LQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDAD 64
          L+F    +  +F+ SF+T LAH  EDPTI+TME FSGYP+ EP  S F N ++SLSVD  
Sbjct: 3  LKFSHSAIIVLFLCSFTTILAHEDEDPTIKTMEDFSGYPIPEPHLS-FQNTVSSLSVDTR 62

Query: 65 ILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARR 99
           L KQI+ELSTFSD+PAPSVTR+LY++KDVLARR
Sbjct: 63 SLQKQIDELSTFSDTPAPSVTRILYSDKDVLARR 95

BLAST of Lsi05G016790 vs. TrEMBL
Match: A0A068TT38_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026222001 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 1

Query: 7   FIALLLPFIFVSSFSTALAH-NHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDADI 66
           ++ L+L   F+S+    LAH N +DPTI+TME FSGYP+HE   S F N ++SLSVDA+ 
Sbjct: 8   YMLLVLSVYFISNCPVNLAHRNEDDPTIKTMEEFSGYPIHE---SHFLNSLSSLSVDAET 67

Query: 67  LVKQIEELSTFSDSPAPSVTRVLYTEKDVLARRH 100
           L KQI+ELS+FSDSPAPSVTR+LY+EKDVL+RR+
Sbjct: 68  LQKQIDELSSFSDSPAPSVTRILYSEKDVLSRRY 98

BLAST of Lsi05G016790 vs. TrEMBL
Match: W9QEA9_9ROSA (N-carbamoyl-L-amino acid hydrolase OS=Morus notabilis GN=L484_016363 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-21
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 1

Query: 5  LQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDAD 64
          L FI LLL FI  S+    L +NHEDPT +TME FSGYP+HE  S + SN +++LSVDA 
Sbjct: 6  LHFIILLLFFICSSA---TLGNNHEDPTTKTMEDFSGYPIHESHSCI-SNTLSALSVDAQ 65

Query: 65 ILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARR 99
           L  QI+ELS+ SD+PAPSVTR+LYTEKDVLARR
Sbjct: 66 TLQNQIDELSSLSDTPAPSVTRILYTEKDVLARR 95

BLAST of Lsi05G016790 vs. TrEMBL
Match: A0A061ENH7_THECC (N-carbamyl-L-amino acid amidohydrolase protein isoform 1 OS=Theobroma cacao GN=TCM_020797 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20
Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 1

Query: 11 LLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDADILVKQI 70
          LL   F+ S  + L   +EDPTI+TM+ FSGYPV EPP    SN   SLSVDA  L KQI
Sbjct: 13 LLFLFFLGSIPSILTQQNEDPTIKTMQDFSGYPVVEPPHPFVSN---SLSVDAQTLQKQI 72

Query: 71 EELSTFSDSPAPSVTRVLYTEKDVLARR 99
          +ELSTFSD+PAPSVTR+LYTEKDVLARR
Sbjct: 73 DELSTFSDTPAPSVTRILYTEKDVLARR 97

BLAST of Lsi05G016790 vs. TAIR10
Match: AT5G43600.1 (AT5G43600.1 ureidoglycolate amidohydrolase)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1

Query: 5   LQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDAD 64
           L  I+LLLP        ++LA   +  +IRTME FSGYP+HEP      N  +SLSVDA 
Sbjct: 13  LLLISLLLP--------SSLAQQQQHESIRTMEDFSGYPIHEPGQFGSINLASSLSVDAP 72

Query: 65  ILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARRH 100
            L  QI+ELS+FSD+P+PSVTRVLYT+KDV ARR+
Sbjct: 73  GLQNQIDELSSFSDAPSPSVTRVLYTDKDVSARRY 99

BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|659076236|ref|XP_008438571.1| (PREDICTED: ureidoglycolate hydrolase [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 3.2e-39
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 1

Query: 1  MLPLLQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLS 60
          MLPLLQ IALLLPFIF+SSFS ALAHNH+DP IRTMEAFSGYPVHEP    FSNPITSLS
Sbjct: 1  MLPLLQLIALLLPFIFISSFSAALAHNHDDPAIRTMEAFSGYPVHEPSPHGFSNPITSLS 60

Query: 61 VDADILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARR 99
          VDAD LVKQIEELSTFSDSPAPSVTR+LYTEKDVLARR
Sbjct: 61 VDADTLVKQIEELSTFSDSPAPSVTRILYTEKDVLARR 98

BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|449432610|ref|XP_004134092.1| (PREDICTED: ureidoglycolate hydrolase [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 1

Query: 1  MLPLLQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLS 60
          MLPLLQ +ALLL FIF+SSFS ALAHNH+DPTIRTMEAFSGYPVHEP S  FS PITSLS
Sbjct: 1  MLPLLQLVALLLHFIFISSFSAALAHNHDDPTIRTMEAFSGYPVHEPSSHGFSTPITSLS 60

Query: 61 VDADILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARR 99
          VDAD LVKQIEELSTFSDSPAPSVTR+LYTEKDVLARR
Sbjct: 61 VDADTLVKQIEELSTFSDSPAPSVTRILYTEKDVLARR 98

BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|645235758|ref|XP_008224417.1| (PREDICTED: ureidoglycolate hydrolase [Prunus mume])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 1

Query: 5  LQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDAD 64
          L+F    +  +F+ SF+T LAH  EDPTI+TM+ FSGYP+HEP  S F N ++SLSVD  
Sbjct: 3  LKFSHSAIIVLFLCSFTTILAHEDEDPTIKTMDDFSGYPIHEPHLS-FQNTVSSLSVDTR 62

Query: 65 ILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARR 99
           L KQI+ELSTFSD+PAPSVTR+LY++KDVLARR
Sbjct: 63 SLQKQIDELSTFSDTPAPSVTRILYSDKDVLARR 95

BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|596161135|ref|XP_007222929.1| (hypothetical protein PRUPE_ppa005238mg [Prunus persica])

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-22
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 1

Query: 5  LQFIALLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDAD 64
          L+F    +  +F+ SF+T LAH  EDPTI+TME FSGYP+ EP  S F N ++SLSVD  
Sbjct: 3  LKFSHSAIIVLFLCSFTTILAHEDEDPTIKTMEDFSGYPIPEPHLS-FQNTVSSLSVDTR 62

Query: 65 ILVKQIEELSTFSDSPAPSVTRVLYTEKDVLARR 99
           L KQI+ELSTFSD+PAPSVTR+LY++KDVLARR
Sbjct: 63 SLQKQIDELSTFSDTPAPSVTRILYSDKDVLARR 95

BLAST of Lsi05G016790 vs. NCBI nr
Match: gi|985464665|ref|XP_015389144.1| (PREDICTED: ureidoglycolate hydrolase isoform X3 [Citrus sinensis])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 1

Query: 10  LLLPFIFVSSFSTALAHNHEDPTIRTMEAFSGYPVHEPPSSVFSNPITSLSVDADILVKQ 69
           LLL  +   S ST  A  +EDPTIRTMEAFSGYP+HE  S V +N  +SLSVD + L K+
Sbjct: 14  LLLVLVIFCSISTIYAEANEDPTIRTMEAFSGYPIHESNSFV-TNLASSLSVDTETLQKR 73

Query: 70  IEELSTFSDSPAPSVTRVLYTEKDVLARRHG 101
           I+ELSTFSD+PAPSVTRVLYTE DVLARR G
Sbjct: 74  IDELSTFSDTPAPSVTRVLYTENDVLARRIG 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
UAH_ARATH2.4e-1855.79Ureidoglycolate hydrolase OS=Arabidopsis thaliana GN=UAH PE=1 SV=1[more]
UAH_ORYSJ4.1e-1051.47Probable ureidoglycolate hydrolase OS=Oryza sativa subsp. japonica GN=UAH PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A0A0LA05_CUCSA1.1e-3887.76Uncharacterized protein OS=Cucumis sativus GN=Csa_3G142980 PE=4 SV=1[more]
M5XRF1_PRUPE5.5e-2262.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005238mg PE=4 SV=1[more]
A0A068TT38_COFCA1.6e-2161.70Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026222001 PE=4 SV=1[more]
W9QEA9_9ROSA6.1e-2163.83N-carbamoyl-L-amino acid hydrolase OS=Morus notabilis GN=L484_016363 PE=4 SV=1[more]
A0A061ENH7_THECC1.0e-2065.91N-carbamyl-L-amino acid amidohydrolase protein isoform 1 OS=Theobroma cacao GN=T... [more]
Match NameE-valueIdentityDescription
AT5G43600.11.3e-1955.79 ureidoglycolate amidohydrolase[more]
Match NameE-valueIdentityDescription
gi|659076236|ref|XP_008438571.1|3.2e-3988.78PREDICTED: ureidoglycolate hydrolase [Cucumis melo][more]
gi|449432610|ref|XP_004134092.1|1.6e-3887.76PREDICTED: ureidoglycolate hydrolase [Cucumis sativus][more]
gi|645235758|ref|XP_008224417.1|1.2e-2262.77PREDICTED: ureidoglycolate hydrolase [Prunus mume][more]
gi|596161135|ref|XP_007222929.1|7.9e-2262.77hypothetical protein PRUPE_ppa005238mg [Prunus persica][more]
gi|985464665|ref|XP_015389144.1|1.0e-2167.03PREDICTED: ureidoglycolate hydrolase isoform X3 [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006807 nitrogen compound metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G016790.1Lsi05G016790.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32494FAMILY NOT NAMEDcoord: 17..98
score: 6.7
NoneNo IPR availablePANTHERPTHR32494:SF5UREIDOGLYCOLATE HYDROLASEcoord: 17..98
score: 6.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G016790Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G016790Bottle gourd (USVL1VR-Ls)lsilsiB056
Lsi05G016790Bottle gourd (USVL1VR-Ls)lsilsiB157
Lsi05G016790Cucumber (Gy14) v1cgylsiB208
Lsi05G016790Cucumber (Gy14) v1cgylsiB415
Lsi05G016790Cucumber (Gy14) v1cgylsiB620
Lsi05G016790Cucurbita maxima (Rimu)cmalsiB010
Lsi05G016790Cucurbita maxima (Rimu)cmalsiB245
Lsi05G016790Cucurbita maxima (Rimu)cmalsiB356
Lsi05G016790Cucurbita maxima (Rimu)cmalsiB764
Lsi05G016790Cucurbita maxima (Rimu)cmalsiB839
Lsi05G016790Cucurbita moschata (Rifu)cmolsiB233
Lsi05G016790Cucurbita moschata (Rifu)cmolsiB345
Lsi05G016790Cucurbita moschata (Rifu)cmolsiB757
Lsi05G016790Cucurbita moschata (Rifu)cmolsiB823
Lsi05G016790Cucurbita pepo (Zucchini)cpelsiB267
Lsi05G016790Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G016790Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G016790Wild cucumber (PI 183967)cpilsiB125
Lsi05G016790Wild cucumber (PI 183967)cpilsiB207
Lsi05G016790Cucumber (Chinese Long) v2culsiB127
Lsi05G016790Cucumber (Chinese Long) v2culsiB209
Lsi05G016790Melon (DHL92) v3.5.1lsimeB360
Lsi05G016790Melon (DHL92) v3.5.1lsimeB378
Lsi05G016790Watermelon (Charleston Gray)lsiwcgB331
Lsi05G016790Watermelon (Charleston Gray)lsiwcgB335
Lsi05G016790Watermelon (Charleston Gray)lsiwcgB343
Lsi05G016790Watermelon (Charleston Gray)lsiwcgB349
Lsi05G016790Watermelon (97103) v1lsiwmB359
Lsi05G016790Watermelon (97103) v1lsiwmB365
Lsi05G016790Watermelon (97103) v1lsiwmB382
Lsi05G016790Cucumber (Gy14) v2cgyblsiB115
Lsi05G016790Cucumber (Gy14) v2cgyblsiB119
Lsi05G016790Cucumber (Gy14) v2cgyblsiB196
Lsi05G016790Melon (DHL92) v3.6.1lsimedB375
Lsi05G016790Melon (DHL92) v3.6.1lsimedB380
Lsi05G016790Melon (DHL92) v3.6.1lsimedB396
Lsi05G016790Silver-seed gourdcarlsiB206
Lsi05G016790Silver-seed gourdcarlsiB210
Lsi05G016790Silver-seed gourdcarlsiB878
Lsi05G016790Silver-seed gourdcarlsiB983
Lsi05G016790Cucumber (Chinese Long) v3cuclsiB139
Lsi05G016790Cucumber (Chinese Long) v3cuclsiB228
Lsi05G016790Watermelon (97103) v2lsiwmbB327
Lsi05G016790Watermelon (97103) v2lsiwmbB333
Lsi05G016790Watermelon (97103) v2lsiwmbB341
Lsi05G016790Wax gourdlsiwgoB421
Lsi05G016790Wax gourdlsiwgoB467