Lsi05G015910 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G015910
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNucleic acid-binding proteins superfamily isoform 3
Locationchr05 : 23678100 .. 23683531 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGTATTGGGATGGTGGGGTAAGGATATATGAGAGGGTAGTAGTTGACATGAGATATTGAGAAGCTTTTGTTTGTAGATATGGAAAGAAAATGATGAAAGTGAGCCTGAAAAAATGTGGGGTATGGAAATGTGGTTGTGTTGTGTTTGTGTATGGGCAAATATCAACCTAACATTTTTCAACTTCCCTTTTCATTTCATTTCTTGTTTTTCAGATTTGACTTCCTCTGACACACTCTTATTGCACATCTTTTGTAGGTCCATTTTCCTTACTAATAATAATATTTATGACTTGTTAGTTTTCACACATTCACCGCCTCTTTATCGCTCTAAGGAGCTATTTAGGGAGGCTGGAATGTAATAAAGATTACTAAGGATCAGATGAGTGTTGGAATGCATGAGGTATCGAATACAGAACGAAAATATAATCGTGAAATGTGAAAATGGTGGAAAAGAGAATTTAGTTAAAAATTGTCGGAACGGAATGAGTTTAATATTACAAATTATCAGGTCCAAACTGCTCGATCCAAACATGGGTTTTGAATTACATTACAATGTAAACTCATTTCATTATGGACCCCCATACAGCCCCTAAAAGAGTGTTTAAGATAAGGAGTGTAAATGTGAAGTTTGAAGCATTATGAAGTCTAAAGAGCTATGAAGTTTTAGGACCTTCGGTGTACGGAGTTTATAAGGCATAAAATTGATGTTTTTTAGTTGTAGGGCCCACGAACTCCTTGGATCAAACAAGAAGTAGAATATTAAATGAAATTTGGGACCTGAACAACGTCATACTGTTTCAAGTCCTGATTTTGTCAAACATTGTAATATAGTTTCTACACTAAGCCTATTTTTGAAACATTTATAGATGTCGAGATTGATGATATGAATCGCCAAAGGCCCAAAGTTATAATTTATATTTTCTTTAATAATTTAAATGCAGTTTTATTGTTTCCAATTTTATCCTTTTTAAACATACTAAATACTGATATTTTAGTCATTTTACTAATATCTATGATGTGACAAATATTAGGGTTTTGGGAGGCTATCTAAAGTCTGACCATTAGGTTTTGCGAAACCGTTTAGGGTTTTAAATTTTGGGAATGATATTTTTGCTCTGTGTTGATGATGGAGATTCATCACCGTCCTTTTTGTAATTCTTGATCTAGAGTTGTATGTTTGAGCATTCAAATAAGATTGATCAATTTGCTTATATGGAGTGTTCAAACCTTAAGTAGGGAGAGGTTGTGCTCCTTACCTCTTGGTAATACAATCCCATTGAAAATCCCTTCTTTGATACCTAAGATGTTGTCTTTTAAGCTACCTTCATCTTTCACTTTGAATCAAAGTAATTCTTATTGATCTATGTATTTCGTTCTATATGCTTAATAATAGATGATTGTCACTTGAAAATTTTAATATGTGATGAGATGATATATGAAAATTGTCACAAAAGTCCTCATGATATCATTTCTTCAATAATATATTCATATTATAGGTACAAATATCTATAAGAGTTGTCATTAATTTCCATGATTGTTTCAAACAAGCAACTAAATTTACATCAATATTTGATAGCATACTTATGTAAATATAGAACAATTGCAAATATAGAGCCCAGATTCAAAGTATTAATATATATAACAACATTTTTAAAAAATTGCAAATATAGCAAAACCTATTAGTGATAGACTTTTATGGTAAGAGTCTATCAGAGATAGAAGTCTAGCACTAATAGACTTTGCTATATTTGCAATTTTTAAAAATGTTGCTATACACTTAGTTATTATTCCTAAAATTGTTACTCATTACAACTACCCTTTAAATATCGTGACTAAATTAAACATCACTTTTCACTCAACATCTAATCATTATTTCAAGCAATACTCCTCAATTTGCTTGCATAGTCTTCAACTCAATGTATATAGTCATGTTGACACCAATGTGGCCAAAAATTTATTGTTTTTTTTTTTTAATAATTTTAAAAGAAAATGGGCATAAAGGAGTTAACATTGTTGGTTTCAAAATGTAGATTTGAGTTTCAGTTTGTATTTGCAAAGCTACATAGTTTTTTTTTCATCTTGAAAAACAATTAAGTTAACATAAATTGATAATTTATGTTCAACAACCCCTCTTGTCTTGTCCTATGAATTATATTTGAACTCCCTTTTAAAATATTTTGAAAAAATTACTCACTAGACCCAACTTTATCTTAAAAGGGACATAGTGCCAAAAAGAAAGAGACAAGCTTAAGAATATTTGTACTATTAAATTCACATCTTTCATGCAACAATAATAAAGCACTCAATTATATACAACCTTGAGGTAACACACATTATTTATAGAATAAATCAAAGAATGTCACAAAGTTAAAGTTAAAAATACAACCATTACATTTTAAAGCAAAGTTTAAGATGATGCTTGTTAATCACAAGCTTTTTAACCAACTATCTTTGATGGTCTAGTAGGTACTAGTACTTGATATTTTTTAAAATGTCAGATTTATTTGGTACTTTATTGGCAGTGTCAAGTAGCCTTTTTCCTTTTATATAATATATAAAATGACATGTGTATATTGCACATTGCAAATATATATATATATATAGAGTACACTTGTGAAGTTGGCTATCATAAGTTTTCTTAATAATTATAGCCTAACTTACCCATTTTGAAGAACCATACAATTTCTCCCCCAAAGGAGGAAAAAATTACAAACTGGGTATGTTTGAGAGTGATTTTAAAATCGTTAAAATTATTTTTGTCATTTTTAAAATGACTCGAAAACACACTTTAATCACTCAAAATTAATTTAATTTCAAATTTTATACTTTTAAATGTAATTTTTAATCATCAAAATTAGTTTTGAAGGATTAAAAATATATTTCGCAGCTTTGAAAATGACAAAAGTGATTTTAGTCATTTTAAAATCACTCCCAAATATGTCCTTACACCAATATGTTTTTCCAAAAAAAATTACAACAATATGTTTATTTTTCTCTAGATGCTCATTTTATAACTATTTGACATTTTATTTAGTTCTCTTTTTGGGGAGATATGCTTTTACAACTAACCCAAACTTGAAATAACAATAATAATAAATATTAAAAATCTAAGATTGACTTATTTTCTAGGATTGTGGCCTATTTTATAACTACTTGACTTTTAGTATTTTAAAATTAAATTTATATGTGTGCACTTTTTTTTTTTTTTATTGTTAATTCTCCTACAAGATATTTTAAAATATAGGGTTTGACTTGGGATTGTTGTAGTTTTAATATATAATTGTTGTAGTCGTGTGCTTTAAAGAAAAATTAACGGTAAAAGTGAAGTAAAATAATTCTAGTAAATTATAATTTTAAATTAAAAAAAGCCTAGTTATAACATTTGGTAAATTAATACTAAATTAGTGTTATTTAATCTAGGAAAATAAATATTATAAAAAATAAAATCAATCAAAATTTCATGATAGAATAGATGGAAATAAGTAAATTAACATGGAATGATAAAATTAAAAAATTGTAAACAATTACAGAAGATGGTAGATTTTTAAGAAAGTTAAATCTCAAAGTTAGTTTCTATGTGGAATAAATTAAAAAATGATTATGATAGGTTAATAAATAATTTGTTTTTTCAAACAACTCATACAATCAACACTTGCATACTCACATTCTAAATGGAGCTTAAGTTTTGAAAACACATAAAAAAAAATAATATTATAGTTAAAAGTGGTTAAATTTTGTAAAATTGGTAAGTTATATTTAATTTCTAAAACTGGATAAAAACATCATGAAGGGTTGTTTATAAAGAGTTTATCAAACCACAATGGCTATTTACGAGACTTTACTAAATAGTGAGACTAAATTGTAACTTTTAAAATCATAGATACTAAATTTTAACTTTCTTTAAATCATATGGACCAAATCTACAATCTAATCTATAAAATTACAAAGAAACTAACACGATTAAGAAAAAAAATGCAGAAAACTAAATATGAGATCGTTATCAAACAATTTTTAAATTATATATAAGCTTTCAATACATTTTCTTATTTGTTTAGTACAACAAAGATACAAGAATTCGAACTAAAGCCACATTGGTCACTAACACACACTCCCTTATTAGTTGATCTATTTAGTATGCTGTTAATGCTCAATAAATCACAATGCCAATAGTTTAATCTAAATAATAATAATAATCATAAAAAAAAATTATTTTAAATAACAAAACTGTTAAAAATATTCATAAATATATCAAAATTTTACTATCTACATATTATAGACTGTGATGAATTACTATACGTAGTCTTTTGCTATATTTATAAATATTTTGGTTGATTTTTAAAACAACTCTTAAGAAAACCATTATCTAATTAGTCTCGAAAATTTGTGCTTAAAGAAAATATATATTTAAAATTTTATGCCTTATAGAAATCCGCGGCAATTTGGCAATCTTCTTCCCGCTGAAAATGAACCTCAAATTTAGGGCGCAGAAATGGCTTAATCCGGCTGTGAACTTCAATTAAACTCCGTGTTTCTCTTGACTGTCATCTCGCAGCGGACATTTCAACTTGGACGACGCCGGCCGAAACTCAGCCATGGAGTTAGATGATCGCCGAAGGCTTCAGGAAGAAGGTGATGATGATCCGTTTCTTAAATTTGTCGATTACGCGAGGTCCGTGCTAGCATTCGAAGACGAAGAAGACTTCGATCCTAATGTTAATGGAACGGAGACAAATACCCCGGGTTGGAGTTGGATCGCCTCTCGGGTCCTCAGAACTTGTATCGCCTACTCCAGTTCTGTTACCCCTGCGATTTTGCTATCCGAGCTCTCGCAGGTACCGCAAATTCGAACTCCTCCTCTAAGGTTTCTTTCTTCGATCATAGAGATAATTTGAGCAATCAAATGGTACAATTATGTTAATTGCCTGATTTCCAATCAAAGATTCCACCGTAATCGAATACAGGAGTTTGATGGAATCTCTTGGTTACAAGTTTGAATTTGTAGCAGTACGCCATCTGAGGTCCTTATTATTATATATACCCACTTATTACCAAGTGATCGTAGTGAGGGGAGGGTGGTACATGGGCCCATGTTTTATTCTAAATGAGGGATTAATATTCGGTACTCATAGTCATATCTTGCCTTGCTTCTAGGCTGTTGAAGTTGATGTCTCCTTAAATTTGCTTGATCCAATTGTAGTCCTATTGGTTTTTTTAAGTATTAGGTAATGCGGGCCAACCTCGGGTCATCTAGATTGCACCTCGACCCCATATTGGTCTTTTTAAGTACTAGTATCCTCTCAATGTTCCTTTGGGGTTCATTATCTCATCAGCTGAGAGGCTATTTCAATTCAACTGTCAATTATGAGATTGTTCATGTGAGAAATGATTGGTTGCCTCCCAAGCTTCATAATCTGGATTCGGAATAA

mRNA sequence

ATGGAAAGCGGACATTTCAACTTGGACGACGCCGGCCGAAACTCAGCCATGGAGTTAGATGATCGCCGAAGGCTTCAGGAAGAAGGTGATGATGATCCGTTTCTTAAATTTGTCGATTACGCGAGGTCCGTGCTAGCATTCGAAGACGAAGAAGACTTCGATCCTAATGTTAATGGAACGGAGACAAATACCCCGGGTTGGAGTTGGATCGCCTCTCGGGTCCTCAGAACTTGTATCGCCTACTCCAGTTCTGTTACCCCTGCGATTTTGCTATCCGAGCTCTCGCAGGTAATGCGGGCCAACCTCGGGTCATCTAGATTGCACCTCGACCCCATATTGGTCTTTTTAAGTACTAGTATCCTCTCAATGTTCCTTTGGGGTTCATTATCTCATCAGCTGAGAGGCTATTTCAATTCAACTGTCAATTATGAGATTGTTCATGTGAGAAATGATTGGTTGCCTCCCAAGCTTCATAATCTGGATTCGGAATAA

Coding sequence (CDS)

ATGGAAAGCGGACATTTCAACTTGGACGACGCCGGCCGAAACTCAGCCATGGAGTTAGATGATCGCCGAAGGCTTCAGGAAGAAGGTGATGATGATCCGTTTCTTAAATTTGTCGATTACGCGAGGTCCGTGCTAGCATTCGAAGACGAAGAAGACTTCGATCCTAATGTTAATGGAACGGAGACAAATACCCCGGGTTGGAGTTGGATCGCCTCTCGGGTCCTCAGAACTTGTATCGCCTACTCCAGTTCTGTTACCCCTGCGATTTTGCTATCCGAGCTCTCGCAGGTAATGCGGGCCAACCTCGGGTCATCTAGATTGCACCTCGACCCCATATTGGTCTTTTTAAGTACTAGTATCCTCTCAATGTTCCTTTGGGGTTCATTATCTCATCAGCTGAGAGGCTATTTCAATTCAACTGTCAATTATGAGATTGTTCATGTGAGAAATGATTGGTTGCCTCCCAAGCTTCATAATCTGGATTCGGAATAA

Protein sequence

MESGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQVMRANLGSSRLHLDPILVFLSTSILSMFLWGSLSHQLRGYFNSTVNYEIVHVRNDWLPPKLHNLDSE
Homology
[Close]
BLAST of Lsi05G015910 vs. TrEMBL
Match: A0A0A0L5D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G166300 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-39
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 3  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTET 62
          S HFN  DA RNSAMELDD ++LQEEGDDDPFLKFVDYARSVLAFED+EDFDPN+NGTET
Sbjct: 5  SKHFNSHDAARNSAMELDDPQKLQEEGDDDPFLKFVDYARSVLAFEDDEDFDPNINGTET 64

Query: 63 NTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ 97
          +TPGW+WIASRVLRTC+AYSSSVTPAILLSELSQ
Sbjct: 65 HTPGWTWIASRVLRTCMAYSSSVTPAILLSELSQ 98

[Close]
BLAST of Lsi05G015910 vs. TrEMBL
Match: A0A067JVK7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19002 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-17
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1 

Query: 17  MELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEE-DFDPNVNGT--ETNTPGWSWIASR 76
           M++D+R+R Q E  DDPFL F+DYARS+L+ ++EE D   + NG   ET+ PGWSWIASR
Sbjct: 1   MDIDERQRRQVE--DDPFLAFIDYARSILSPDEEEGDVGCDTNGLVRETSGPGWSWIASR 60

Query: 77  VLRTCIAYSSSVTPAILLSELSQVMR 100
           +L+TCIAYSS VT AIL S+LSQ  R
Sbjct: 61  ILKTCIAYSSGVTAAILFSDLSQAWR 84

[Close]
BLAST of Lsi05G015910 vs. TrEMBL
Match: B9HX11_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15440g PE=4 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1 

Query: 30 DDDPFLKFVDYARSVLA----FEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSV 89
          + DPFL F+D+ARSVL+     EDEE +DP+ NG+E+  PGWSWIASR+L+TCIAYSS V
Sbjct: 5  NQDPFLAFIDHARSVLSPVEGDEDEEIYDPSTNGSESTGPGWSWIASRILKTCIAYSSGV 64

Query: 90 TPAILLSELSQ 97
          T AILLS+LSQ
Sbjct: 65 TSAILLSDLSQ 75

[Close]
BLAST of Lsi05G015910 vs. TrEMBL
Match: A0A061EQ03_THECC (Nucleic acid-binding proteins superfamily, putative isoform 2 OS=Theobroma cacao GN=TCM_021358 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 15 SAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRV 74
          S ME+D+ ++ +EE ++DPFL F+DYARSVL+   +ED DP+ N    + PGWSW  SR+
Sbjct: 8  SLMEIDNDQKQEEEEEEDPFLAFIDYARSVLS--PDEDDDPSGNEAGNSGPGWSWTVSRI 67

Query: 75 LRTCIAYSSSVTPAILLSELSQ 97
          L+TCI+YSS VT AILLS+LSQ
Sbjct: 68 LKTCISYSSGVTAAILLSDLSQ 87

[Close]
BLAST of Lsi05G015910 vs. TrEMBL
Match: A0A061EWV0_THECC (Nucleic acid-binding proteins superfamily isoform 3 OS=Theobroma cacao GN=TCM_021358 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 15 SAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRV 74
          S ME+D+ ++ +EE ++DPFL F+DYARSVL+   +ED DP+ N    + PGWSW  SR+
Sbjct: 8  SLMEIDNDQKQEEEEEEDPFLAFIDYARSVLS--PDEDDDPSGNEAGNSGPGWSWTVSRI 67

Query: 75 LRTCIAYSSSVTPAILLSELSQ 97
          L+TCI+YSS VT AILLS+LSQ
Sbjct: 68 LKTCISYSSGVTAAILLSDLSQ 87

[Close]
BLAST of Lsi05G015910 vs. TAIR10
Match: AT3G17030.1 (AT3G17030.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1 

Query: 8  LDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFD------PNVNGTE 67
          + D    S +E+ D+  ++     DPFL F+DYAR+V++ ED+ED        P    TE
Sbjct: 1  MGDTNGASLIEIGDQEEVE-----DPFLAFLDYARTVISPEDDEDEKEESKRGPGEAMTE 60

Query: 68 TNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ 97
           + PGW W+ASR+L+TC AYSS VT AILLS+LSQ
Sbjct: 61 ASGPGWGWVASRILKTCTAYSSGVTAAILLSDLSQ 90

[Close]
BLAST of Lsi05G015910 vs. NCBI nr
Match: gi|659076944|ref|XP_008438949.1| (PREDICTED: uncharacterized protein LOC103483891 isoform X1 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 2.6e-40
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 3  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTET 62
          S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET
Sbjct: 5  SKHFNSHDAGRYSAMELDDPRKLQEEGDDDPFLKFVDYARSVLAFEDDEDFDPNVNGTET 64

Query: 63 NTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ 97
          +TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Sbjct: 65 DTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ 98

[Close]
BLAST of Lsi05G015910 vs. NCBI nr
Match: gi|449433435|ref|XP_004134503.1| (PREDICTED: uncharacterized protein LOC101215087 isoform X2 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-39
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 3  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTET 62
          S HFN  DA RNSAMELDD ++LQEEGDDDPFLKFVDYARSVLAFED+EDFDPN+NGTET
Sbjct: 5  SKHFNSHDAARNSAMELDDPQKLQEEGDDDPFLKFVDYARSVLAFEDDEDFDPNINGTET 64

Query: 63 NTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ 97
          +TPGW+WIASRVLRTC+AYSSSVTPAILLSELSQ
Sbjct: 65 HTPGWTWIASRVLRTCMAYSSSVTPAILLSELSQ 98

[Close]
BLAST of Lsi05G015910 vs. NCBI nr
Match: gi|778679070|ref|XP_011651084.1| (PREDICTED: uncharacterized protein LOC101215087 isoform X1 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-39
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 3  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTET 62
          S HFN  DA RNSAMELDD ++LQEEGDDDPFLKFVDYARSVLAFED+EDFDPN+NGTET
Sbjct: 5  SKHFNSHDAARNSAMELDDPQKLQEEGDDDPFLKFVDYARSVLAFEDDEDFDPNINGTET 64

Query: 63 NTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ 97
          +TPGW+WIASRVLRTC+AYSSSVTPAILLSELSQ
Sbjct: 65 HTPGWTWIASRVLRTCMAYSSSVTPAILLSELSQ 98

[Close]
BLAST of Lsi05G015910 vs. NCBI nr
Match: gi|985463682|ref|XP_006488990.2| (PREDICTED: uncharacterized protein LOC102613316 [Citrus sinensis])

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 1 

Query: 7   NLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVL------AFEDEEDFDPNVNGT 66
           N  D  + S ME+D+ +  Q+E ++DPFL  ++YARSVL         DE   DPN  G+
Sbjct: 13  NHTDRNKVSLMEIDNAQNQQQEEEEDPFLGLIEYARSVLWPGEEEGGRDESGQDPNNTGS 72

Query: 67  ETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ 97
           E+  PGWSWIASR+L+TCIAYSS VT AILLS+L+Q
Sbjct: 73  ESRGPGWSWIASRILKTCIAYSSGVTVAILLSDLAQ 108

[Close]
BLAST of Lsi05G015910 vs. NCBI nr
Match: gi|657996344|ref|XP_008390539.1| (PREDICTED: uncharacterized protein LOC103452781 isoform X2 [Malus domestica])

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 14 NSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNT-PGWSWIAS 73
          NSAM++D+++       +DP LKF+DYARSVL+ E +E+ DPN NG ET+T P W+W AS
Sbjct: 5  NSAMDIDEQK-----DHEDPLLKFIDYARSVLSPETDENLDPNQNGPETSTRPSWNWTAS 64

Query: 74 RVLRTCIAYSSSVTPAILLSELSQ 97
          R+L+TC AYSS VT AILLS+L+Q
Sbjct: 65 RILKTCSAYSSGVTTAILLSDLAQ 83

The following BLAST results are available for this feature:
BLAST of Lsi05G015910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G015910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5D2_CUCSA2.0e-3987.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G166300 PE=4 SV=1[more]
A0A067JVK7_JATCU2.8e-1760.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19002 PE=4 SV=1[more]
B9HX11_POPTR4.8e-1766.20Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15440g PE=4 SV=2[more]
A0A061EQ03_THECC4.8e-1757.32Nucleic acid-binding proteins superfamily, putative isoform 2 OS=Theobroma cacao... [more]
A0A061EWV0_THECC4.8e-1757.32Nucleic acid-binding proteins superfamily isoform 3 OS=Theobroma cacao GN=TCM_02... [more]
BLAST of Lsi05G015910 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17030.11.3e-1647.37 Nucleic acid-binding proteins superfamily[more]
BLAST of Lsi05G015910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076944|ref|XP_008438949.1|2.6e-4091.49PREDICTED: uncharacterized protein LOC103483891 isoform X1 [Cucumis melo][more]
gi|449433435|ref|XP_004134503.1|2.9e-3987.23PREDICTED: uncharacterized protein LOC101215087 isoform X2 [Cucumis sativus][more]
gi|778679070|ref|XP_011651084.1|2.9e-3987.23PREDICTED: uncharacterized protein LOC101215087 isoform X1 [Cucumis sativus][more]
gi|985463682|ref|XP_006488990.2|2.4e-1753.13PREDICTED: uncharacterized protein LOC102613316 [Citrus sinensis][more]
gi|657996344|ref|XP_008390539.1|2.4e-1758.33PREDICTED: uncharacterized protein LOC103452781 isoform X2 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G015910.1Lsi05G015910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36033FAMILY NOT NAMEDcoord: 14..96
score: 5.4
NoneNo IPR availablePANTHERPTHR36033:SF1NUCLEIC ACID-BINDING PROTEIN-RELATEDcoord: 14..96
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G015910Cla021793Watermelon (97103) v1lsiwmB362
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G015910Melon (DHL92) v3.6.1lsimedB385
Lsi05G015910Silver-seed gourdcarlsiB254
Lsi05G015910Silver-seed gourdcarlsiB869
Lsi05G015910Cucumber (Chinese Long) v3cuclsiB218
Lsi05G015910Watermelon (97103) v2lsiwmbB330
Lsi05G015910Wax gourdlsiwgoB432
Lsi05G015910Cucumber (Gy14) v1cgylsiB420
Lsi05G015910Cucurbita maxima (Rimu)cmalsiB757
Lsi05G015910Cucurbita moschata (Rifu)cmolsiB238
Lsi05G015910Cucurbita moschata (Rifu)cmolsiB752
Lsi05G015910Cucurbita pepo (Zucchini)cpelsiB512
Lsi05G015910Cucurbita pepo (Zucchini)cpelsiB718
Lsi05G015910Wild cucumber (PI 183967)cpilsiB198
Lsi05G015910Cucumber (Chinese Long) v2culsiB199
Lsi05G015910Melon (DHL92) v3.5.1lsimeB369
Lsi05G015910Watermelon (Charleston Gray)lsiwcgB333
Lsi05G015910Cucumber (Gy14) v2cgyblsiB184