Lsi05G015080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G015080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor bHLH95
Location	chr05 : 22877280 .. 22877980 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTGCACAGATTCTGTGGTTCCACTTTTTCCCCTCATATTGCCCGTGCATCAGTCTGAAGCCACTGAAAAGAAGGCTTCGGCCTCAAGAAAGCGTAGCAGAGCTCTGGAAGCCAACGGCGGTGTACAGAAGAAAGGGAGGGAGAAGAGGAAAGAGATGAGTGAGAGTTTCGATGTACTTCAATCTCTTGTCCCGAATCTCTCTCCTAAGGTTAGTGGATCATGGATTTGATTCTCGCTTTAGTATAATCTGGCTATTTCTAGGTACATTTTGTGTTTGCGGTTTTAATCCTGTTTTGGTGCTGAAATAATCAGGCTACGAGAGAGACTATTGTTTCCGAAACGATCCAGTTCATCGAGTTTCTACAGAAGCAGTTGATGAGGCTGGAAATGGAGAAGAAATCATCGGAATCGGTGACGATGCTTCCGAATACGAACTCGGATTCATCAGGCGGCGGCGTCATTGTCTCGGTCTCCGGCAACATTGTGTTGTTTGGAATTATTATTGCTTCTGTTCAACGAGGTATGGTGACACAGATTTTAATGGTGTTTGAAAGACACCAGGCTGAAGTTCTTGCAGCGAATGTTGCAGTCAGCCATGGCAATTTAACTTTAACAGTCACAGCTTCTGTACACGGTAACGTAGAGAATACCATAGAGCAGATTAGAAACGATATCTTAAGCTTAAAGAAGTAA

mRNA sequence

ATGGAAGCCTGCACAGATTCTGTGGTTCCACTTTTTCCCCTCATATTGCCCGTGCATCAGTCTGAAGCCACTGAAAAGAAGGCTTCGGCCTCAAGAAAGCGTAGCAGAGCTCTGGAAGCCAACGGCGGTGTACAGAAGAAAGGGAGGGAGAAGAGGAAAGAGATGAGTGAGAGTTTCGATGTACTTCAATCTCTTGTCCCGAATCTCTCTCCTAAGGCTACGAGAGAGACTATTGTTTCCGAAACGATCCAGTTCATCGAGTTTCTACAGAAGCAGTTGATGAGGCTGGAAATGGAGAAGAAATCATCGGAATCGGTGACGATGCTTCCGAATACGAACTCGGATTCATCAGGCGGCGGCGTCATTGTCTCGGTCTCCGGCAACATTGTGTTGTTTGGAATTATTATTGCTTCTGTTCAACGAGGTATGGTGACACAGATTTTAATGGTGTTTGAAAGACACCAGGCTGAAGTTCTTGCAGCGAATGTTGCAGTCAGCCATGGCAATTTAACTTTAACAGTCACAGCTTCTGTACACGGTAACGTAGAGAATACCATAGAGCAGATTAGAAACGATATCTTAAGCTTAAAGAAGTAA

Coding sequence (CDS)

ATGGAAGCCTGCACAGATTCTGTGGTTCCACTTTTTCCCCTCATATTGCCCGTGCATCAGTCTGAAGCCACTGAAAAGAAGGCTTCGGCCTCAAGAAAGCGTAGCAGAGCTCTGGAAGCCAACGGCGGTGTACAGAAGAAAGGGAGGGAGAAGAGGAAAGAGATGAGTGAGAGTTTCGATGTACTTCAATCTCTTGTCCCGAATCTCTCTCCTAAGGCTACGAGAGAGACTATTGTTTCCGAAACGATCCAGTTCATCGAGTTTCTACAGAAGCAGTTGATGAGGCTGGAAATGGAGAAGAAATCATCGGAATCGGTGACGATGCTTCCGAATACGAACTCGGATTCATCAGGCGGCGGCGTCATTGTCTCGGTCTCCGGCAACATTGTGTTGTTTGGAATTATTATTGCTTCTGTTCAACGAGGTATGGTGACACAGATTTTAATGGTGTTTGAAAGACACCAGGCTGAAGTTCTTGCAGCGAATGTTGCAGTCAGCCATGGCAATTTAACTTTAACAGTCACAGCTTCTGTACACGGTAACGTAGAGAATACCATAGAGCAGATTAGAAACGATATCTTAAGCTTAAAGAAGTAA

Protein sequence

MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK

Homology

[Close]

BLAST of Lsi05G015080 vs. TrEMBL
Match: A0A0A0L5R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G151510 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.9e-84
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 1


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSV+PLFPLILPVH  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVIPLFPLILPVHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESV +LPNTNSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVALLPNTNSDSSGGI 120

Query: 121 ---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTA 180
              GVIVS+SGNIVLFG+IIASVQRG+VTQIL+VFERH+AEVLAANV VSHGNLTLTVTA
Sbjct: 121 NGDGVIVSISGNIVLFGVIIASVQRGIVTQILLVFERHKAEVLAANVVVSHGNLTLTVTA 180

Query: 181 SVHGNVENTIEQIRNDILSLKK 199
           SVHG VENTIEQIRNDIL LKK
Sbjct: 181 SVHGYVENTIEQIRNDILGLKK 202

[Close]

BLAST of Lsi05G015080 vs. TrEMBL
Match: A0A061EPZ0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021144 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-32
Identity = 98/204 (48.04%), Postives = 135/204 (66.18%), Query Frame = 1


Query: 1   MEACTDSVVPLFPLILPVHQSEAT--EKKASASRKRSRALEANGGVQ--KKGREKRKEMS 60
           ME   D ++P      P  Q+ A   E+K S+SR+R RA EA    +  KK R++R++M+
Sbjct: 37  MEGYNDKLIPPLSQFSPSRQAAAAIVEEKGSSSRERGRAKEAKEVTESLKKERDRREKMA 96

Query: 61  ESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSES----VTMLPNT 120
           E++D+LQS+VPNL PKATRE IV ETI +I+ L+K++ R+E  K SSES    + +  N 
Sbjct: 97  ENYDLLQSMVPNLFPKATREMIVGETIAYIQSLEKEITRMEELKNSSESSKGKMHLYSNR 156

Query: 121 NSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTL 180
           NS      + V+VS N+V FGI  + V+  +VT I MV  +H+AEVL ANVAV+H  LTL
Sbjct: 157 NSS-----IDVTVSSNVVFFGIQ-SMVRPRLVTDIFMVLHKHKAEVLGANVAVNHRQLTL 216

Query: 181 TVTASVHGNVENTIEQIRNDILSL 197
           TVTA V+GN + TIE+I+ DIL L
Sbjct: 217 TVTAVVNGNRDRTIEKIKGDILIL 234

[Close]

BLAST of Lsi05G015080 vs. TrEMBL
Match: W9RQ46_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008473 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-22
Identity = 84/209 (40.19%), Postives = 125/209 (59.81%), Query Frame = 1


Query: 1   MEACTDSVVPLFPLILPVHQSEA----TEKKASASRKRS--RALEANGGVQKKGREKRKE 60
           ME  +DSV+P            A     E  +S+ RKR   R          + R++R +
Sbjct: 30  MEGYSDSVIPPLSHFQSPRSESAINVVAEYNSSSKRKRENIRPKPPKEDCLGRERDRRVK 89

Query: 61  MSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVT------M 120
           M+ESF +L+S+VP+L PK+++E ++  T ++I++L+++   LE  K+SS S        +
Sbjct: 90  MNESFALLESIVPSLLPKSSKEKVLQTTTEYIKYLEEKKKMLEKLKESSRSPMAATRSLV 149

Query: 121 LPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHG 180
            P T+ +SS   V V+  G++ LFGI  +  + G VTQI MVF++H+AEVLAANV V+ G
Sbjct: 150 FPCTSRNSS---VTVTACGSVALFGIE-SRKRHGFVTQIFMVFQKHRAEVLAANVVVNDG 209

Query: 181 NLTLTVTASVHGNVENTIEQIRNDILSLK 198
            LTLTVTA V+G+   TIE I+ DIL LK
Sbjct: 210 LLTLTVTAFVNGDESTTIEGIKRDILMLK 234

[Close]

BLAST of Lsi05G015080 vs. TrEMBL
Match: A0A0S3R8Y3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G526400 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 82/206 (39.81%), Postives = 120/206 (58.25%), Query Frame = 1


Query: 2   EACTDSVVPLFPLILP-----VHQSEATEKKASA-SRKR-SRALEANGGVQKKGREKRKE 61
           E  T S +P F  I P     +H S   E  A+  SRKR  R   +N G     RE+R +
Sbjct: 9   ETETHSTMPPFSQIPPSSSSFLHPSTIAEATANTTSRKRVKRTSHSNCGSVNMERERRSK 68

Query: 62  MSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNT-- 121
           M++ F  LQ+ VP L P+ATRE I++ETI +I+ L+K+  RLE  KK  E++  +  +  
Sbjct: 69  MTQMFTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKKLKETMKGVEGSTV 128

Query: 122 --NSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNL 181
              +++    ++V+VS N+  FGI     + G+VTQIL VF  HQAE+LAANV V++G L
Sbjct: 129 ECGNNNRNCSLVVTVSDNVAFFGIQWMP-RPGLVTQILKVFCNHQAEILAANVTVNNGKL 188

Query: 182 TLTVTASVHGNVENTIEQIRNDILSL 197
            L +TA V  N    +E+I+ +I+ L
Sbjct: 189 ILAITALVQNNGNCVVEKIKREIMGL 213

[Close]

BLAST of Lsi05G015080 vs. TrEMBL
Match: V7CAD8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G101300g PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 80/202 (39.60%), Postives = 118/202 (58.42%), Query Frame = 1


Query: 5   TDSVVPLFPLILP---VHQSEATEKKASA-SRKRSRALEANGGVQKKG--REKRKEMSES 64
           T S +P    I P   +H S   E  A+  SRKR + +      Q     RE+R +M++ 
Sbjct: 13  THSTMPPLSEIPPSSFLHPSTIAENTANTTSRKRVKRIMGQTNCQSLNIERERRSKMTQM 72

Query: 65  FDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKS----SESVTMLPNTNS 124
           F  LQ+ VP L P+ATRE I++ETI +I+ L+K+  RLE  K++     ES     N+N 
Sbjct: 73  FTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKETMKGVEESAVECGNSNR 132

Query: 125 DSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTV 184
           + S   ++V+VS N+  FGI     + G+VTQIL VF  HQA++LAANV+V++G L L +
Sbjct: 133 NCS---IMVTVSANVAFFGIQWVP-RPGLVTQILKVFCNHQADILAANVSVNNGKLILAI 192

Query: 185 TASVHGNVENTIEQIRNDILSL 197
           TA V  N +  +E I+ +I+ L
Sbjct: 193 TALVQNNGKCVVENIKREIMGL 210

[Close]

BLAST of Lsi05G015080 vs. TAIR10
Match: AT1G49770.1 (AT1G49770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 7.1e-06
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1


Query: 49  REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK-----KSS 108
           RE+RK+M + F  L +L+P L PKA + TIV E +  I+ L++ L +LEM+K      SS
Sbjct: 79  RERRKKMRDMFSKLHALLPQLPPKADKSTIVDEAVSSIKSLEQTLQKLEMQKLEKLQYSS 138

Query: 109 ESVTMLPNT------NSDSSGGGVIVSVSGN 129
            S    P T      +S SS   ++  +S +
Sbjct: 139 ASTNTTPTTTFAYAPSSSSSPTALLTPISNH 169

[Close]

BLAST of Lsi05G015080 vs. NCBI nr
Match: gi|659076675|ref|XP_008438808.1| (PREDICTED: transcription factor bHLH95-like [Cucumis melo])

HSP 1 Score: 322.4 bits (825), Expect = 5.5e-85
Identity = 178/201 (88.56%), Postives = 189/201 (94.03%), Query Frame = 1


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSVVPLFPLILP+H  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVVPLFPLILPIHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESVT+LPN+NSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVTLLPNSNSDSSGGN 120

Query: 121 --GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTAS 180
             GVIVS+SGNIVLFG+IIASVQRGMVTQIL+VFERH+ EVLAANV VSHGNLTLTVTAS
Sbjct: 121 GDGVIVSISGNIVLFGVIIASVQRGMVTQILLVFERHKTEVLAANVVVSHGNLTLTVTAS 180

Query: 181 VHGNVENTIEQIRNDILSLKK 199
           VHG VENTIEQIRNDILSLKK
Sbjct: 181 VHGYVENTIEQIRNDILSLKK 201

[Close]

BLAST of Lsi05G015080 vs. NCBI nr
Match: gi|449432807|ref|XP_004134190.1| (PREDICTED: transcription factor bHLH95-like [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 2.7e-84
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 1


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSV+PLFPLILPVH  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVIPLFPLILPVHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESV +LPNTNSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVALLPNTNSDSSGGI 120

Query: 121 ---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTA 180
              GVIVS+SGNIVLFG+IIASVQRG+VTQIL+VFERH+AEVLAANV VSHGNLTLTVTA
Sbjct: 121 NGDGVIVSISGNIVLFGVIIASVQRGIVTQILLVFERHKAEVLAANVVVSHGNLTLTVTA 180

Query: 181 SVHGNVENTIEQIRNDILSLKK 199
           SVHG VENTIEQIRNDIL LKK
Sbjct: 181 SVHGYVENTIEQIRNDILGLKK 202

[Close]

BLAST of Lsi05G015080 vs. NCBI nr
Match: gi|590660785|ref|XP_007035491.1| (Uncharacterized protein TCM_021144 [Theobroma cacao])

HSP 1 Score: 146.4 bits (368), Expect = 5.4e-32
Identity = 98/204 (48.04%), Postives = 135/204 (66.18%), Query Frame = 1


Query: 1   MEACTDSVVPLFPLILPVHQSEAT--EKKASASRKRSRALEANGGVQ--KKGREKRKEMS 60
           ME   D ++P      P  Q+ A   E+K S+SR+R RA EA    +  KK R++R++M+
Sbjct: 37  MEGYNDKLIPPLSQFSPSRQAAAAIVEEKGSSSRERGRAKEAKEVTESLKKERDRREKMA 96

Query: 61  ESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSES----VTMLPNT 120
           E++D+LQS+VPNL PKATRE IV ETI +I+ L+K++ R+E  K SSES    + +  N 
Sbjct: 97  ENYDLLQSMVPNLFPKATREMIVGETIAYIQSLEKEITRMEELKNSSESSKGKMHLYSNR 156

Query: 121 NSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTL 180
           NS      + V+VS N+V FGI  + V+  +VT I MV  +H+AEVL ANVAV+H  LTL
Sbjct: 157 NSS-----IDVTVSSNVVFFGIQ-SMVRPRLVTDIFMVLHKHKAEVLGANVAVNHRQLTL 216

Query: 181 TVTASVHGNVENTIEQIRNDILSL 197
           TVTA V+GN + TIE+I+ DIL L
Sbjct: 217 TVTAVVNGNRDRTIEKIKGDILIL 234

[Close]

BLAST of Lsi05G015080 vs. NCBI nr
Match: gi|731388880|ref|XP_010649780.1| (PREDICTED: basic helix-loop-helix protein A-like [Vitis vinifera])

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23
Identity = 81/182 (44.51%), Postives = 115/182 (63.19%), Query Frame = 1


Query: 17  PVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRE 76
           P   +E      S SRKR+R  EA    Q+  R +R++MS+ + +LQ++VP L PKATR 
Sbjct: 31  PPPMAEGRAAFTSTSRKRTRT-EAG---QETERGRREKMSDMYALLQTMVPTLFPKATRV 90

Query: 77  TIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSG--GGVIVSVSGNIVLFGI 136
            I+SET ++I+ L+++  RLE  KKS  +V   P   S  S     + V+VSGN+  FGI
Sbjct: 91  KIISETAEYIKELERRRDRLEEMKKSIGAVAATPILVSQCSNPDSSLRVTVSGNVAFFGI 150

Query: 137 IIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDIL 196
                +RG+ TQI+MVFE+H+A+V AANVAV+HG L +TVTA V  N +  I++I  DI 
Sbjct: 151 QSVRARRGLATQIIMVFEKHEAQVFAANVAVNHGLLMVTVTAFVGNNGDGVIDKIIRDIR 208

[Close]

BLAST of Lsi05G015080 vs. NCBI nr
Match: gi|703132051|ref|XP_010105032.1| (hypothetical protein L484_008473 [Morus notabilis])

HSP 1 Score: 112.8 bits (281), Expect = 6.7e-22
Identity = 84/209 (40.19%), Postives = 125/209 (59.81%), Query Frame = 1


Query: 1   MEACTDSVVPLFPLILPVHQSEA----TEKKASASRKRS--RALEANGGVQKKGREKRKE 60
           ME  +DSV+P            A     E  +S+ RKR   R          + R++R +
Sbjct: 30  MEGYSDSVIPPLSHFQSPRSESAINVVAEYNSSSKRKRENIRPKPPKEDCLGRERDRRVK 89

Query: 61  MSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVT------M 120
           M+ESF +L+S+VP+L PK+++E ++  T ++I++L+++   LE  K+SS S        +
Sbjct: 90  MNESFALLESIVPSLLPKSSKEKVLQTTTEYIKYLEEKKKMLEKLKESSRSPMAATRSLV 149

Query: 121 LPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHG 180
            P T+ +SS   V V+  G++ LFGI  +  + G VTQI MVF++H+AEVLAANV V+ G
Sbjct: 150 FPCTSRNSS---VTVTACGSVALFGIE-SRKRHGFVTQIFMVFQKHRAEVLAANVVVNDG 209

Query: 181 NLTLTVTASVHGNVENTIEQIRNDILSLK 198
            LTLTVTA V+G+   TIE I+ DIL LK
Sbjct: 210 LLTLTVTAFVNGDESTTIEGIKRDILMLK 234

The following BLAST results are available for this feature:

BLAST of Lsi05G015080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G015080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5R7_CUCSA	1.9e-84	87.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G151510 PE=4 SV=1	[more]
A0A061EPZ0_THECC	3.8e-32	48.04	Uncharacterized protein OS=Theobroma cacao GN=TCM_021144 PE=4 SV=1	[more]
W9RQ46_9ROSA	4.6e-22	40.19	Uncharacterized protein OS=Morus notabilis GN=L484_008473 PE=4 SV=1	[more]
A0A0S3R8Y3_PHAAN	1.5e-20	39.81	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G526400 PE=...	[more]
V7CAD8_PHAVU	2.2e-19	39.60	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G101300g PE=4 SV=1	[more]

BLAST of Lsi05G015080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49770.1	7.1e-06	36.26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Lsi05G015080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076675\|ref\|XP_008438808.1\|	5.5e-85	88.56	PREDICTED: transcription factor bHLH95-like [Cucumis melo]	[more]
gi\|449432807\|ref\|XP_004134190.1\|	2.7e-84	87.62	PREDICTED: transcription factor bHLH95-like [Cucumis sativus]	[more]
gi\|590660785\|ref\|XP_007035491.1\|	5.4e-32	48.04	Uncharacterized protein TCM_021144 [Theobroma cacao]	[more]
gi\|731388880\|ref\|XP_010649780.1\|	3.5e-23	44.51	PREDICTED: basic helix-loop-helix protein A-like [Vitis vinifera]	[more]
gi\|703132051\|ref\|XP_010105032.1\|	6.7e-22	40.19	hypothetical protein L484_008473 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G015080.1	Lsi05G015080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 49..103 score: 2.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 49..90 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 47..95 score: 3.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 39..89 score: 9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 49..103 score: 5.37
None	No IPR available	unknown	Coil	Coil	coord: 86..106 scor
None	No IPR available	PFAM	PF13740	ACT_6	coord: 140..196 score: 4.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G015080	Cucurbita maxima (Rimu)	cmalsiB757
Lsi05G015080	Cucurbita maxima (Rimu)	cmalsiB834
Lsi05G015080	Cucurbita moschata (Rifu)	cmolsiB238
Lsi05G015080	Cucurbita moschata (Rifu)	cmolsiB342
Lsi05G015080	Cucurbita moschata (Rifu)	cmolsiB752
Lsi05G015080	Cucurbita moschata (Rifu)	cmolsiB819
Lsi05G015080	Cucurbita pepo (Zucchini)	cpelsiB118
Lsi05G015080	Cucurbita pepo (Zucchini)	cpelsiB268
Lsi05G015080	Cucurbita pepo (Zucchini)	cpelsiB273
Lsi05G015080	Cucurbita pepo (Zucchini)	cpelsiB512
Lsi05G015080	Cucurbita pepo (Zucchini)	cpelsiB718
Lsi05G015080	Wild cucumber (PI 183967)	cpilsiB198
Lsi05G015080	Wild cucumber (PI 183967)	cpilsiB467
Lsi05G015080	Wild cucumber (PI 183967)	cpilsiB474
Lsi05G015080	Cucumber (Chinese Long) v2	culsiB199
Lsi05G015080	Cucumber (Chinese Long) v2	culsiB460
Lsi05G015080	Cucumber (Chinese Long) v2	culsiB466
Lsi05G015080	Melon (DHL92) v3.5.1	lsimeB342
Lsi05G015080	Melon (DHL92) v3.5.1	lsimeB369
Lsi05G015080	Watermelon (Charleston Gray)	lsiwcgB333
Lsi05G015080	Watermelon (Charleston Gray)	lsiwcgB345
Lsi05G015080	Watermelon (97103) v1	lsiwmB362
Lsi05G015080	Watermelon (97103) v1	lsiwmB384
Lsi05G015080	Cucumber (Gy14) v2	cgyblsiB184
Lsi05G015080	Cucumber (Gy14) v2	cgyblsiB433
Lsi05G015080	Melon (DHL92) v3.6.1	lsimedB359
Lsi05G015080	Melon (DHL92) v3.6.1	lsimedB385
Lsi05G015080	Silver-seed gourd	carlsiB065
Lsi05G015080	Silver-seed gourd	carlsiB298
Lsi05G015080	Silver-seed gourd	carlsiB552
Lsi05G015080	Silver-seed gourd	carlsiB761
Lsi05G015080	Cucumber (Chinese Long) v3	cuclsiB218
Lsi05G015080	Cucumber (Chinese Long) v3	cuclsiB494
Lsi05G015080	Watermelon (97103) v2	lsiwmbB330
Lsi05G015080	Watermelon (97103) v2	lsiwmbB344
Lsi05G015080	Wax gourd	lsiwgoB423
Lsi05G015080	Wax gourd	lsiwgoB432
Lsi05G015080	Bottle gourd (USVL1VR-Ls)	lsilsiB006
Lsi05G015080	Cucumber (Gy14) v1	cgylsiB287
Lsi05G015080	Cucumber (Gy14) v1	cgylsiB420
Lsi05G015080	Cucumber (Gy14) v1	cgylsiB586
Lsi05G015080	Cucurbita maxima (Rimu)	cmalsiB250
Lsi05G015080	Cucurbita maxima (Rimu)	cmalsiB353