Lsi05G014510 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G014510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Aluminum-induced protein
Location	chr05 : 22363601 .. 22364244 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAATTAAAAAAAGAAGAAGGGGAAAATGACGAGAATACCCTCGTAATCTCCTATATATGCCAACAAAGCAAGCGATCACTCATCCATGTCCGGGCTTCTGATATTTCTACCTTCACCAGTTCCATAAAACAACTCTCTGTTTCCATTTTTTTCTTTTTTTTTCTGTTCAATTGGCTTTTTTTTTTTAAAGGAAAGCTATGTTGGGGGTATTTAGCAGTTCCATTATGTCTCCGCCGGACGAGTTAGTCGCCGCCGGCAGCCGTACGCCATCGCCAAAAACCACATCGGCGGCTCTTTTGAACCGGTTCGTCCAGACCAACTCCTCCGCCGTGTCGCTGCAGCTTGGGGACCACGTCCAGCTTGCTTACACTCACGAAACTGAATCCGCCTTATGTCCCAGGTAAATTACTCTATTTAATTTCCTACACTCTGTTTTACGATGTCGTTTTAAATCCACCGCCGCCGTATCGGAATCTTTTTTTTCCCGAATTACTAGTAAACTCAATGGAACTCGAAATACGGTCAGATCGGTGATCGGACGGTCCAGGGTGACGGAGGCTTTTAATTCTTCGAATCTCTGCCGTTCAATTGATGGATGTTTGGTTGCTGAGGAAACTGGAAGGAAACCGACGGAAATATAA

mRNA sequence

TTTAAATTAAAAAAAGAAGAAGGGGAAAATGACGAGAATACCCTCGTAATCTCCTATATATGCCAACAAAGCAAGCGATCACTCATCCATGTCCGGGCTTCTGATATTTCTACCTTCACCAGTTCCATAAAACAACTCTCTGTTTCCATTTTTTTCTTTTTTTTTCTGTTCAATTGGCTTTTTTTTTTTAAAGGAAAGCTATGTTGGGGGTATTTAGCAGTTCCATTATGTCTCCGCCGGACGAGTTAGTCGCCGCCGGCAGCCGTACGCCATCGCCAAAAACCACATCGGCGGCTCTTTTGAACCGGTTCGTCCAGACCAACTCCTCCGCCGTGTCGCTGCAGCTTGGGGACCACGTCCAGCTTGCTTACACTCACGAAACTGAATCCGCCTTATGTCCCAGTAAACTCAATGGAACTCGAAATACGGTCAGATCGGTGATCGGACGGTCCAGGGTGACGGAGGCTTTTAATTCTTCGAATCTCTGCCGTTCAATTGATGGATGTTTGGTTGCTGAGGAAACTGGAAGGAAACCGACGGAAATATAA

Coding sequence (CDS)

ATGTTGGGGGTATTTAGCAGTTCCATTATGTCTCCGCCGGACGAGTTAGTCGCCGCCGGCAGCCGTACGCCATCGCCAAAAACCACATCGGCGGCTCTTTTGAACCGGTTCGTCCAGACCAACTCCTCCGCCGTGTCGCTGCAGCTTGGGGACCACGTCCAGCTTGCTTACACTCACGAAACTGAATCCGCCTTATGTCCCAGTAAACTCAATGGAACTCGAAATACGGTCAGATCGGTGATCGGACGGTCCAGGGTGACGGAGGCTTTTAATTCTTCGAATCTCTGCCGTTCAATTGATGGATGTTTGGTTGCTGAGGAAACTGGAAGGAAACCGACGGAAATATAA

Protein sequence

MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHETESALCPSKLNGTRNTVRSVIGRSRVTEAFNSSNLCRSIDGCLVAEETGRKPTEI

Homology

[Close]

BLAST of Lsi05G014510 vs. TrEMBL
Match: A0A0A0L511_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149950 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-26
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLG+FSSSIMSPPDELVAAGSRTPSPKTTSA LLNRFVQTN SAVSLQLGDHVQLAYTHE
Sbjct: 1  MLGLFSSSIMSPPDELVAAGSRTPSPKTTSATLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61 TESALCP 68
          TESALCP
Sbjct: 61 TESALCP 67

[Close]

BLAST of Lsi05G014510 vs. TrEMBL
Match: C5IWL4_9ROSI (Aluminum-induced protein OS=Cucumis hystrix PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-26
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLG+FSSSIMSPPDELVAAGSRTPSPKTTSA LLNRFVQTN SAVSLQLGDHVQLAYTHE
Sbjct: 1  MLGLFSSSIMSPPDELVAAGSRTPSPKTTSATLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61 TESALCP 68
          TESALCP
Sbjct: 61 TESALCP 67

[Close]

BLAST of Lsi05G014510 vs. TrEMBL
Match: A0A068TSH0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026002001 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.7e-21
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLGVFSSSIMSPPDELVAAGSRTPSPK T+AAL+NRF+QTNSSAVS+Q+GD  QLAYTH 
Sbjct: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKITAAALVNRFLQTNSSAVSMQIGDDAQLAYTHH 60

Query: 61 TESALCP 68
           ES L P
Sbjct: 61 NESPLHP 67

[Close]

BLAST of Lsi05G014510 vs. TrEMBL
Match: K4AXN3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-20
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLGVFSSSI+SPPDELVAAGSRTPSPK TS AL+NRFVQ+NSSA+S+Q+GD VQLAY+H 
Sbjct: 1  MLGVFSSSIVSPPDELVAAGSRTPSPKITSDALVNRFVQSNSSAISMQIGDFVQLAYSHS 60

Query: 61 TESALCP 68
           ESA+ P
Sbjct: 61 KESAVLP 67

[Close]

BLAST of Lsi05G014510 vs. TrEMBL
Match: M1AHY9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008988 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLGVFSSSI+SPP+ELVAAGSRTPSPK TS AL+NRFVQ NSSA+S+Q+GD VQLAY+H 
Sbjct: 1  MLGVFSSSIVSPPEELVAAGSRTPSPKITSDALVNRFVQRNSSAISMQIGDFVQLAYSHS 60

Query: 61 TESALCP 68
           ESA+ P
Sbjct: 61 NESAVLP 67

[Close]

BLAST of Lsi05G014510 vs. TAIR10
Match: AT5G19140.1 (AT5G19140.1 Aluminium induced protein with YGL and LRDR motifs)

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-21
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLG+FS +I+SPP+ELVAAGSRTPSPKTT + L+NRFV+ N SAVS+Q+GD+VQLAY+H 
Sbjct: 1  MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query: 61 TESALCP 68
           ES L P
Sbjct: 61 NESPLRP 67

[Close]

BLAST of Lsi05G014510 vs. NCBI nr
Match: gi|778678566|ref|XP_011650989.1| (PREDICTED: stem-specific protein TSJT1 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 4.4e-26
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLG+FSSSIMSPPDELVAAGSRTPSPKTTSA LLNRFVQTN SAVSLQLGDHVQLAYTHE
Sbjct: 1  MLGLFSSSIMSPPDELVAAGSRTPSPKTTSATLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61 TESALCP 68
          TESALCP
Sbjct: 61 TESALCP 67

[Close]

BLAST of Lsi05G014510 vs. NCBI nr
Match: gi|238800460|gb|ACR56069.1| (aluminum-induced protein [Cucumis hystrix])

HSP 1 Score: 125.9 bits (315), Expect = 4.4e-26
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLG+FSSSIMSPPDELVAAGSRTPSPKTTSA LLNRFVQTN SAVSLQLGDHVQLAYTHE
Sbjct: 1  MLGLFSSSIMSPPDELVAAGSRTPSPKTTSATLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61 TESALCP 68
          TESALCP
Sbjct: 61 TESALCP 67

[Close]

BLAST of Lsi05G014510 vs. NCBI nr
Match: gi|659076493|ref|XP_008438711.1| (PREDICTED: stem-specific protein TSJT1 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLG+FSSSIMSPPDELVAAGSRTPSPKTTS  LLNRFVQTN SAVSLQLGDHVQLAYTHE
Sbjct: 1  MLGLFSSSIMSPPDELVAAGSRTPSPKTTSTTLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61 TESALCP 68
          TESALCP
Sbjct: 61 TESALCP 67

[Close]

BLAST of Lsi05G014510 vs. NCBI nr
Match: gi|661897290|emb|CDO99002.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLGVFSSSIMSPPDELVAAGSRTPSPK T+AAL+NRF+QTNSSAVS+Q+GD  QLAYTH 
Sbjct: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKITAAALVNRFLQTNSSAVSMQIGDDAQLAYTHH 60

Query: 61 TESALCP 68
           ES L P
Sbjct: 61 NESPLHP 67

[Close]

BLAST of Lsi05G014510 vs. NCBI nr
Match: gi|460367130|ref|XP_004229428.1| (PREDICTED: stem-specific protein TSJT1 [Solanum lycopersicum])

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-20
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 1  MLGVFSSSIMSPPDELVAAGSRTPSPKTTSAALLNRFVQTNSSAVSLQLGDHVQLAYTHE 60
          MLGVFSSSI+SPPDELVAAGSRTPSPK TS AL+NRFVQ+NSSA+S+Q+GD VQLAY+H 
Sbjct: 1  MLGVFSSSIVSPPDELVAAGSRTPSPKITSDALVNRFVQSNSSAISMQIGDFVQLAYSHS 60

Query: 61 TESALCP 68
           ESA+ P
Sbjct: 61 KESAVLP 67

The following BLAST results are available for this feature:

BLAST of Lsi05G014510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G014510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L511_CUCSA	3.1e-26	95.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G149950 PE=4 SV=1	[more]
C5IWL4_9ROSI	3.1e-26	95.52	Aluminum-induced protein OS=Cucumis hystrix PE=2 SV=1	[more]
A0A068TSH0_COFCA	8.7e-21	82.09	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026002001 PE=4 SV=1	[more]
K4AXN3_SOLLC	4.3e-20	79.10	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1AHY9_SOLTU	1.6e-19	77.61	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008988 PE=4 SV=1	[more]

BLAST of Lsi05G014510 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19140.1	7.8e-21	70.15	Aluminium induced protein with YGL and LRDR motifs	[more]

BLAST of Lsi05G014510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778678566\|ref\|XP_011650989.1\|	4.4e-26	95.52	PREDICTED: stem-specific protein TSJT1 [Cucumis sativus]	[more]
gi\|238800460\|gb\|ACR56069.1\|	4.4e-26	95.52	aluminum-induced protein [Cucumis hystrix]	[more]
gi\|659076493\|ref\|XP_008438711.1\|	1.3e-25	94.03	PREDICTED: stem-specific protein TSJT1 [Cucumis melo]	[more]
gi\|661897290\|emb\|CDO99002.1\|	1.2e-20	82.09	unnamed protein product [Coffea canephora]	[more]
gi\|460367130\|ref\|XP_004229428.1\|	6.2e-20	79.10	PREDICTED: stem-specific protein TSJT1 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR024286	DUF3700

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006529	asparagine biosynthetic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0006541	glutamine metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G014510.1	Lsi05G014510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024286	Domain of unknown function DUF3700	PFAM	PF12481	DUF3700	coord: 2..72 score: 5.4
None	No IPR available	PANTHER	PTHR11772	ASPARAGINE SYNTHETASE	coord: 1..65 score: 2.6
None	No IPR available	PANTHER	PTHR11772:SF18	ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS	coord: 1..65 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G014510	Cp4.1LG12g02230	Cucurbita pepo (Zucchini)	cpelsiB118
Lsi05G014510	Cp4.1LG17g01160	Cucurbita pepo (Zucchini)	cpelsiB273

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G014510	Melon (DHL92) v3.6.1	lsimedB359
Lsi05G014510	Melon (DHL92) v3.6.1	lsimedB385
Lsi05G014510	Silver-seed gourd	carlsiB065
Lsi05G014510	Silver-seed gourd	carlsiB200
Lsi05G014510	Silver-seed gourd	carlsiB298
Lsi05G014510	Silver-seed gourd	carlsiB552
Lsi05G014510	Cucumber (Chinese Long) v3	cuclsiB218
Lsi05G014510	Watermelon (97103) v2	lsiwmbB330
Lsi05G014510	Watermelon (97103) v2	lsiwmbB344
Lsi05G014510	Wax gourd	lsiwgoB422
Lsi05G014510	Wax gourd	lsiwgoB432
Lsi05G014510	Bottle gourd (USVL1VR-Ls)	lsilsiB006
Lsi05G014510	Cucumber (Gy14) v1	cgylsiB420
Lsi05G014510	Cucurbita maxima (Rimu)	cmalsiB250
Lsi05G014510	Cucurbita maxima (Rimu)	cmalsiB353
Lsi05G014510	Cucurbita maxima (Rimu)	cmalsiB757
Lsi05G014510	Cucurbita maxima (Rimu)	cmalsiB834
Lsi05G014510	Cucurbita moschata (Rifu)	cmolsiB238
Lsi05G014510	Cucurbita moschata (Rifu)	cmolsiB342
Lsi05G014510	Cucurbita moschata (Rifu)	cmolsiB752
Lsi05G014510	Cucurbita moschata (Rifu)	cmolsiB819
Lsi05G014510	Cucurbita pepo (Zucchini)	cpelsiB512
Lsi05G014510	Cucurbita pepo (Zucchini)	cpelsiB718
Lsi05G014510	Wild cucumber (PI 183967)	cpilsiB198
Lsi05G014510	Cucumber (Chinese Long) v2	culsiB199
Lsi05G014510	Melon (DHL92) v3.5.1	lsimeB342
Lsi05G014510	Melon (DHL92) v3.5.1	lsimeB369
Lsi05G014510	Watermelon (Charleston Gray)	lsiwcgB333
Lsi05G014510	Watermelon (Charleston Gray)	lsiwcgB345
Lsi05G014510	Watermelon (97103) v1	lsiwmB362
Lsi05G014510	Watermelon (97103) v1	lsiwmB384
Lsi05G014510	Cucumber (Gy14) v2	cgyblsiB184