Lsi05G014150 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G014150
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 22109791 .. 22111165 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAGGTTTTAAGAACCATCTTATAAAATCACAAACAAATCTTCAGGTTTAGAAAGTTCGACAAACCTAATCTACATGAATTTGTCGGTTTATGAGTTTTCTTAAAATTTGTTTAGTTCAACAAAGCCAATTCCAAATTATTAATTAAAAGTCCTTTTTACTTGTGATAAAATTACACACAAATATATCTATCTTAATTTCAATTCATCAAATAATTCCTATGATATATTTTAACCTTCAACAATTTTTTTTGTTGCAATTATTCCTCTAATTCAAGGAGTATAAGTTTTTATTCAAAAAGTTTTTACTGATCTTAATTTAAAATTTAAGAGTTAGTAAATAGCTTACTTAAGTTACTAATAATTTCACTATTTTGTTTATGTATTTCTCTAAGAAATAATTCGAACACCATAACCGACTCCACCCAAATAATTCACGTTAGATTGGATCAAGTTCATCAACTAACTAAGACCATTTGAATTTGATAAGTTTCTAACCTAGATTAGGTCTAAAAACTACAAAATACCTTTTACCTTTCTTTTATCGACGCAGTCAAAGAGTAGAGATTTGAACCTCTAACCTTTTGGTCAATGATATATGTCTTAACCAATGGATCTATATTCAAGTTGGCCAAAAAAAGTCTTTCAACCTAACTAAACCTATAAACACCCTTTACACAGGCATCCATTAATAAAATTAGATGCAAACGCAATGTCTGGACCAATAAAACTGATGAACTGGTCACTCAATAATCTTCTTGCATTTTCAGATGCCTTAAAATAAAAAATAAAAAATGAAACAGAAAAAAGAAAACACCAGTACACTGCATTTTCTACCCTGATTCTTGCCTGTAAAGGTTTCCATTTTCTACTTTCCTTTTCAGTGCCAGAAGGCATCATTTTCATTGATTCTACTTTTCAGTTCATTACAATGTATTCAAATTTACCTGTGTTAGAGAGAATAATGTGCAAGTTGACTACTGCTAAGCTATCAGTTCATTTGATATGTGACATCAGTTTGGAGAAGGAAAAGAAAAGGAGAGAGAGAGAGAGAGAGAAAGAGATCCGCGAAAGGATTCCATCTGCCAATATTCAGATTCTTTCATCATGCATTAGCATGTGATGCGCAACAATACATCTTGATGGGAAACATCTTATCAATAATTCTGTTACAGAAATAACATGCTATAAGAACAATTATCGTGTATCATACTCACAGTGCAGAAGCTCAAGGTCTCCATGGCACCCGCAATATTCTATCATAACGGGTTCATTGTCTGCCCCTCAACAGGAGAACTACTCAGCCTCTTTACCTTTGGAGAAGTCACCAAACACAAGACTCAATTTTCCATTCAACGCTCAACAAAAATAA

mRNA sequence

ATGTATAAGTTCATTACAATGTATTCAAATTTACCTGTGTTAGAGAGAATAATGTGCAAGTTGACTACTGCTAAGCTATCAGTTCATTTGATATGTGACATCAGTTTGGAGAAGGAAAAGAAAAGGAGAGAGAGAGAGAGAGAGAAAGAGATCCGCGAAAGGATTCCATCTGCCAATATTCAGATTCTTTCATCATGCATTAGCATAAGCTCAAGGTCTCCATGGCACCCGCAATATTCTATCATAACGGGTTCATTGTCTGCCCCTCAACAGGAGAACTACTCAGCCTCTTTACCTTTGGAGAAGTCACCAAACACAAGACTCAATTTTCCATTCAACGCTCAACAAAAATAA

Coding sequence (CDS)

ATGTATAAGTTCATTACAATGTATTCAAATTTACCTGTGTTAGAGAGAATAATGTGCAAGTTGACTACTGCTAAGCTATCAGTTCATTTGATATGTGACATCAGTTTGGAGAAGGAAAAGAAAAGGAGAGAGAGAGAGAGAGAGAAAGAGATCCGCGAAAGGATTCCATCTGCCAATATTCAGATTCTTTCATCATGCATTAGCATAAGCTCAAGGTCTCCATGGCACCCGCAATATTCTATCATAACGGGTTCATTGTCTGCCCCTCAACAGGAGAACTACTCAGCCTCTTTACCTTTGGAGAAGTCACCAAACACAAGACTCAATTTTCCATTCAACGCTCAACAAAAATAA

Protein sequence

MYKFITMYSNLPVLERIMCKLTTAKLSVHLICDISLEKEKKRREREREKEIRERIPSANIQILSSCISISSRSPWHPQYSIITGSLSAPQQENYSASLPLEKSPNTRLNFPFNAQQK
Homology
[Close]
BLAST of Lsi05G014150 vs. TrEMBL
Match: A0A0A0L5E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167880 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.5e-12
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 

Query: 2  YKFITMYSNLPVLERIMCKLTTAKLSVHLICDISLEKEKKRREREREKEIRERIPSANIQ 61
          ++ +TMY+NLP LERIMCKLT A LS+HLI  ISLE EKKR ER    EIR+RIPSANIQ
Sbjct: 20 HRLVTMYANLPELERIMCKLTPAMLSIHLIHSISLETEKKRGER----EIRKRIPSANIQ 77

Query: 62 IL 64
          IL
Sbjct: 80 IL 77

[Close]
BLAST of Lsi05G014150 vs. NCBI nr
Match: gi|700202042|gb|KGN57175.1| (hypothetical protein Csa_3G167880 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 

Query: 2  YKFITMYSNLPVLERIMCKLTTAKLSVHLICDISLEKEKKRREREREKEIRERIPSANIQ 61
          ++ +TMY+NLP LERIMCKLT A LS+HLI  ISLE EKKR ER    EIR+RIPSANIQ
Sbjct: 20 HRLVTMYANLPELERIMCKLTPAMLSIHLIHSISLETEKKRGER----EIRKRIPSANIQ 77

Query: 62 IL 64
          IL
Sbjct: 80 IL 77

The following BLAST results are available for this feature:
BLAST of Lsi05G014150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G014150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5E0_CUCSA7.5e-1270.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G167880 PE=4 SV=1[more]
BLAST of Lsi05G014150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G014150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202042|gb|KGN57175.1|1.1e-1170.97hypothetical protein Csa_3G167880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G014150.1Lsi05G014150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G014150CsaV3_3G015250Cucumber (Chinese Long) v3cuclsiB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G014150Cucumber (Gy14) v1cgylsiB416
Lsi05G014150Cucurbita maxima (Rimu)cmalsiB246
Lsi05G014150Cucurbita maxima (Rimu)cmalsiB765
Lsi05G014150Cucurbita moschata (Rifu)cmolsiB234
Lsi05G014150Cucurbita moschata (Rifu)cmolsiB759
Lsi05G014150Cucurbita pepo (Zucchini)cpelsiB507
Lsi05G014150Cucurbita pepo (Zucchini)cpelsiB715
Lsi05G014150Wild cucumber (PI 183967)cpilsiB208
Lsi05G014150Cucumber (Chinese Long) v2culsiB210
Lsi05G014150Melon (DHL92) v3.5.1lsimeB379
Lsi05G014150Watermelon (Charleston Gray)lsiwcgB336
Lsi05G014150Watermelon (97103) v1lsiwmB366
Lsi05G014150Cucumber (Gy14) v2cgyblsiB197
Lsi05G014150Melon (DHL92) v3.6.1lsimedB397
Lsi05G014150Silver-seed gourdcarlsiB253
Lsi05G014150Watermelon (97103) v2lsiwmbB334
Lsi05G014150Wax gourdlsiwgoB444