Lsi05G013800 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G013800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Non-specific serine/threonine protein kinase
Location	chr05 : 21701183 .. 21702115 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGACATAGCTTTCCTTTTCTGCATCTTTAGTTGAAATTGATTCAAGAGATAAGAAGTCAAAGAAGCCTAAGTAATCTATCATTTGTAGCAGAGGTAAAAATTTCATTAGAGTTGCGTGTTAAATTTTCATGAAACCTGATGCCAACAATTGCTCCCTTTACCAAACCTGGTGAATTCTGGTCTCAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTACAGACAGGTACAAGACAGAATGGGTTGGTTTTTAATGACGTTTGAGTGCTTAAAAATAAATCTCTTGCTCTGGAAAATACCTTTTTAACACTTAAAACGACATTCCAAACATGACGAAGTCAAGTAAGCCATTTATCACACTAACTTCTAACATTCAATTCATTTCAAACCTTGCAGTTGTGTGAAAGGCTGTCAAATGATTTGGGCACAAACCCAGAGCTCGAACGACAAAATTCAAGCTCATTTGCATTAAACAGTACATGTTAGAAGAAAGGTATAGGATTTTTATTAGAATGATTATTATTCTTATTTTATAATTTGGGTTGATATCAAGCAAGGCCTTTGATTGGTGCATAAGTGGGTTTAAATGTAGATAATAGATAGAGCCAAATATTACATGGCAGGAAGCCTCCTTTGTATCTCCCTTTGTATGTAACACTGAATATCAAATGTAAAAGAACAGAAAGTTCATTTGTATAATAGAAGCTTGAGAATATGATCATAGATTTCTCCTCTTCTATAACTTAGATACAAATATTCTAAACAAATTTGATATACATTACTTCATCCTATTTGGATTCTTTCCATACATAGTTTACATTTTCTGATGAAAATATGCGACTTCCAAATCATAATGCTGCACAGGAATTGGCTTCCTTTTCAACTTTATAA

mRNA sequence

ATGACTTTGAAATTGATTCAAGAGATAAGAAGTCAAAGAAGCCTAAGTAATCTATCATTTGTAGCAGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTACAGACAGGTACAAGACAGAATGGTACATGTTAGAAGAAAGTTTACATTTTCTGATGAAAATATGCGACTTCCAAATCATAATGCTGCACAGGAATTGGCTTCCTTTTCAACTTTATAA

Coding sequence (CDS)

ATGACTTTGAAATTGATTCAAGAGATAAGAAGTCAAAGAAGCCTAAGTAATCTATCATTTGTAGCAGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTACAGACAGGTACAAGACAGAATGGTACATGTTAGAAGAAAGTTTACATTTTCTGATGAAAATATGCGACTTCCAAATCATAATGCTGCACAGGAATTGGCTTCCTTTTCAACTTTATAA

Protein sequence

MTLKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRMVHVRRKFTFSDENMRLPNHNAAQELASFSTL

Homology

[Close]

BLAST of Lsi05G013800 vs. Swiss-Prot
Match: CIPK1_ARATH (CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIPK1 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRMV 55
           L++ QE R+Q+    LS  AEVFEI P L+VVEL+KS+GDS  YRQ+ +R++
Sbjct: 379 LRVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSYGDSCLYRQLYERLL 430

[Close]

BLAST of Lsi05G013800 vs. Swiss-Prot
Match: CIPKH_ARATH (CBL-interacting serine/threonine-protein kinase 17 OS=Arabidopsis thaliana GN=CIPK17 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRMVH 56
           LK I+E  +Q+    LS  AEVFEISP L+VVEL+KS GDSS Y+Q+ +R+++
Sbjct: 367 LKAIKEESTQKRQCGLSVTAEVFEISPSLNVVELRKSHGDSSLYKQLYERLLN 419

[Close]

BLAST of Lsi05G013800 vs. TrEMBL
Match: A0A0A0L993_CUCSA (Non-specific serine/threonine protein kinase OS=Cucumis sativus GN=Csa_3G171200 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-15
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRM 54
           LKLIQEIRSQ+SLSNLSFVAEVFEI PLLHVVELKKSFGDSSAYRQ+ +R+
Sbjct: 368 LKLIQEIRSQKSLSNLSFVAEVFEIRPLLHVVELKKSFGDSSAYRQLCERL 418

[Close]

BLAST of Lsi05G013800 vs. TrEMBL
Match: E5GC46_CUCME (Non-specific serine/threonine protein kinase OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRM 54
           LKLIQEIRSQ+S SNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQ+ +R+
Sbjct: 361 LKLIQEIRSQKSPSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERL 411

[Close]

BLAST of Lsi05G013800 vs. TrEMBL
Match: K7MCB5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQV 50
           LK++QEI++Q+ L NLS  AEVFEISP L+VVEL KS GD+S YRQ+
Sbjct: 350 LKVVQEIKTQKCLGNLSVAAEVFEISPSLYVVELSKSCGDASVYRQL 396

[Close]

BLAST of Lsi05G013800 vs. TrEMBL
Match: A0A067JVL0_JATCU (Non-specific serine/threonine protein kinase OS=Jatropha curcas GN=JCGZ_19091 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQV 50
           LK++QE +  RSL +LS  AEVFEISP L+VVEL+KS+GDSS YRQ+
Sbjct: 372 LKVVQENKEHRSLGSLSVAAEVFEISPSLYVVELRKSYGDSSVYRQL 418

[Close]

BLAST of Lsi05G013800 vs. TrEMBL
Match: I1MHN9_SOYBN (Non-specific serine/threonine protein kinase OS=Glycine max GN=GLYMA_15G187400 PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQV 50
           LK++QEI++Q+ L NLS  AEVFEISP L+VVEL KS GD+S YRQ+
Sbjct: 377 LKVVQEIKTQKCLGNLSVAAEVFEISPSLYVVELSKSCGDASVYRQL 423

[Close]

BLAST of Lsi05G013800 vs. TAIR10
Match: AT3G17510.1 (AT3G17510.1 CBL-interacting protein kinase 1)

HSP 1 Score: 57.0 bits (136), Expect = 6.5e-09
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRMV 55
           L++ QE R+Q+    LS  AEVFEI P L+VVEL+KS+GDS  YRQ+ +R++
Sbjct: 379 LRVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSYGDSCLYRQLYERLL 430

[Close]

BLAST of Lsi05G013800 vs. TAIR10
Match: AT1G48260.1 (AT1G48260.1 CBL-interacting protein kinase 17)

HSP 1 Score: 57.0 bits (136), Expect = 6.5e-09
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRMVH 56
           LK I+E  +Q+    LS  AEVFEISP L+VVEL+KS GDSS Y+Q+ +R+++
Sbjct: 367 LKAIKEESTQKRQCGLSVTAEVFEISPSLNVVELRKSHGDSSLYKQLYERLLN 419

[Close]

BLAST of Lsi05G013800 vs. NCBI nr
Match: gi|778679183|ref|XP_011651100.1| (PREDICTED: CBL-interacting protein kinase 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-15
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRM 54
           LKLIQEIRSQ+SLSNLSFVAEVFEI PLLHVVELKKSFGDSSAYRQ+ +R+
Sbjct: 308 LKLIQEIRSQKSLSNLSFVAEVFEIRPLLHVVELKKSFGDSSAYRQLCERL 358

[Close]

BLAST of Lsi05G013800 vs. NCBI nr
Match: gi|778679180|ref|XP_011651099.1| (PREDICTED: CBL-interacting serine/threonine-protein kinase 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-15
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRM 54
           LKLIQEIRSQ+SLSNLSFVAEVFEI PLLHVVELKKSFGDSSAYRQ+ +R+
Sbjct: 368 LKLIQEIRSQKSLSNLSFVAEVFEIRPLLHVVELKKSFGDSSAYRQLCERL 418

[Close]

BLAST of Lsi05G013800 vs. NCBI nr
Match: gi|659077065|ref|XP_008439014.1| (PREDICTED: CBL-interacting serine/threonine-protein kinase 1 isoform X3 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRM 54
           LKLIQEIRSQ+S SNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQ+ +R+
Sbjct: 308 LKLIQEIRSQKSPSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERL 358

[Close]

BLAST of Lsi05G013800 vs. NCBI nr
Match: gi|307136206|gb|ADN34044.1| (CBL-interacting serine/threonine-protein kinase [Cucumis melo subsp. melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRM 54
           LKLIQEIRSQ+S SNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQ+ +R+
Sbjct: 361 LKLIQEIRSQKSPSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERL 411

[Close]

BLAST of Lsi05G013800 vs. NCBI nr
Match: gi|659077061|ref|XP_008439012.1| (PREDICTED: CBL-interacting serine/threonine-protein kinase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 3   LKLIQEIRSQRSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQVQDRM 54
           LKLIQEIRSQ+S SNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQ+ +R+
Sbjct: 368 LKLIQEIRSQKSPSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERL 418

The following BLAST results are available for this feature:

BLAST of Lsi05G013800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CIPK1_ARATH	1.2e-07	53.85	CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIP...	[more]
CIPKH_ARATH	1.2e-07	54.72	CBL-interacting serine/threonine-protein kinase 17 OS=Arabidopsis thaliana GN=CI...	[more]

BLAST of Lsi05G013800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L993_CUCSA	6.8e-15	88.24	Non-specific serine/threonine protein kinase OS=Cucumis sativus GN=Csa_3G171200 ...	[more]
E5GC46_CUCME	1.2e-14	88.24	Non-specific serine/threonine protein kinase OS=Cucumis melo subsp. melo PE=3 SV...	[more]
K7MCB5_SOYBN	1.0e-07	65.96	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A067JVL0_JATCU	1.0e-07	65.96	Non-specific serine/threonine protein kinase OS=Jatropha curcas GN=JCGZ_19091 PE...	[more]
I1MHN9_SOYBN	1.0e-07	65.96	Non-specific serine/threonine protein kinase OS=Glycine max GN=GLYMA_15G187400 P...	[more]

BLAST of Lsi05G013800 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17510.1	6.5e-09	53.85	CBL-interacting protein kinase 1	[more]
AT1G48260.1	6.5e-09	54.72	CBL-interacting protein kinase 17	[more]

BLAST of Lsi05G013800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679183\|ref\|XP_011651100.1\|	9.7e-15	88.24	PREDICTED: CBL-interacting protein kinase 1 isoform X2 [Cucumis sativus]	[more]
gi\|778679180\|ref\|XP_011651099.1\|	9.7e-15	88.24	PREDICTED: CBL-interacting serine/threonine-protein kinase 1 isoform X1 [Cucumis...	[more]
gi\|659077065\|ref\|XP_008439014.1\|	1.7e-14	88.24	PREDICTED: CBL-interacting serine/threonine-protein kinase 1 isoform X3 [Cucumis...	[more]
gi\|307136206\|gb\|ADN34044.1\|	1.7e-14	88.24	CBL-interacting serine/threonine-protein kinase [Cucumis melo subsp. melo]	[more]
gi\|659077061\|ref\|XP_008439012.1\|	1.7e-14	88.24	PREDICTED: CBL-interacting serine/threonine-protein kinase 1 isoform X1 [Cucumis...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G013800.1	Lsi05G013800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24343	SERINE/THREONINE KINASE	coord: 3..53 score: 2.0
None	No IPR available	PANTHER	PTHR24343:SF143	CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1-RELATED	coord: 3..53 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G013800	MELO3C006758.2	Melon (DHL92) v3.6.1	lsimedB397
Lsi05G013800	Cp4.1LG08g05460	Cucurbita pepo (Zucchini)	cpelsiB715
Lsi05G013800	Carg25661	Silver-seed gourd	carlsiB678
Lsi05G013800	CsaV3_3G015590	Cucumber (Chinese Long) v3	cuclsiB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G013800	Wax gourd	lsiwgoB444
Lsi05G013800	Cucumber (Gy14) v1	cgylsiB416
Lsi05G013800	Cucurbita maxima (Rimu)	cmalsiB246
Lsi05G013800	Cucurbita maxima (Rimu)	cmalsiB765
Lsi05G013800	Cucurbita moschata (Rifu)	cmolsiB234
Lsi05G013800	Cucurbita moschata (Rifu)	cmolsiB759
Lsi05G013800	Cucurbita pepo (Zucchini)	cpelsiB507
Lsi05G013800	Wild cucumber (PI 183967)	cpilsiB208
Lsi05G013800	Cucumber (Chinese Long) v2	culsiB210
Lsi05G013800	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G013800	Watermelon (Charleston Gray)	lsiwcgB336
Lsi05G013800	Watermelon (97103) v1	lsiwmB366
Lsi05G013800	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G013800	Silver-seed gourd	carlsiB253
Lsi05G013800	Cucumber (Chinese Long) v3	cuclsiB245
Lsi05G013800	Watermelon (97103) v2	lsiwmbB334