Lsi05G012920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G012920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 20709772 .. 20710484 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACGCCGAGTTTTCCGTCCATGTCCTCTTCGCGTATGGCTGAAAGGTAACTTCTATCATCGAAGGATGTCTGTGTCCGAAGCGTTTTAAATAGTTTATATTTTGAAGAATCTTTCGCTTCTTTTCTGTTGGTGAGCAAAATAGCGGCACTGCCCATTCGGAAGTAGCAGTTAAGGATTAATCTGGAGTGTTCCTTTCCTGCATACCAACCGTTTGATAAAATTTCTGTACTAAGCACAACTGCATTTGAGTTTTCGTGAACTTGAAGAAGATTTTCAGCTAAATGAATGGCAACAGCACTTGCACTGCACCCCATTCCAGAGAGGTTATAGCTTTTAATGTCACTTCTCATGGAATATTTGTTGATGACTATGGATGACAGAGAAGGAGAAGGGCAAAAGCCACTACAATTAACGATAAGAATATCAATGTTGGAAGGAGAGAGATGGGTTTTGGTTAAAAGATCATCCATGACAGGAAACAGTACCATATGGACTTCATTAATGGATTCCTGTTGATGGGTTTTGGGTGGTATGAAATGCAGGGCTGGAGGGAGGCATGTTTGTTCACTCTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGAGGCTCTCTTTGTCAAAAATATCCATCAACGTTGCATTTTCAAGGAAAAGGGAGAAGGGAATCCTGCAGAAGCTTGGTGGTCTGAGGCATGAGAAGTCAACTAAA

mRNA sequence

AGACGCCGAGTTTTCCGTCCATGTCCTCTTCGCGTATGGCTGAAAGGGCTGGAGGGAGGCATGTTTGTTCACTCTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGAGGCTCTCTTTGTCAAAAATATCCATCAACGTTGCATTTTCAAGGAAAAGGGAGAAGGGAATCCTGCAGAAGCTTGGTGGTCTGAGGCATGAGAAGTCAACTAAA

Coding sequence (CDS)

ATGTCCTCTTCGCGTATGGCTGAAAGGGCTGGAGGGAGGCATGTTTGTTCACTCTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGAGGCTCTCTTTGTCAAAAATATCCATCAACGTTGCATTTTCAAGGAAAAGGGAGAAGGGAATCCTGCAGAAGCTTGGTGGTCTGAGGCATGAGAAGTCAACTAAA

Protein sequence

MSSSRMAERAGGRHVCSLCPEDLRVLAMKLRLSLSKISINVAFSRKREKGILQKLGGLRHEKSTK
Homology
[Close]
BLAST of Lsi05G012920 vs. TrEMBL
Match: A0A0A0L5P9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178515 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-18
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 9  RAGGRHVCSLCPEDLRVLAMKLRLSLSKISINVAFSRKREKGILQKLGGLRHEKSTK 66
          RAGGR VCSLCPEDLRVLAMKL LSLSKISI VAFSRK EKG L+KLGGLRHEKSTK
Sbjct: 25 RAGGRQVCSLCPEDLRVLAMKLILSLSKISIKVAFSRKVEKGTLKKLGGLRHEKSTK 81

[Close]
BLAST of Lsi05G012920 vs. NCBI nr
Match: gi|700202177|gb|KGN57310.1| (hypothetical protein Csa_3G178515 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 9  RAGGRHVCSLCPEDLRVLAMKLRLSLSKISINVAFSRKREKGILQKLGGLRHEKSTK 66
          RAGGR VCSLCPEDLRVLAMKL LSLSKISI VAFSRK EKG L+KLGGLRHEKSTK
Sbjct: 25 RAGGRQVCSLCPEDLRVLAMKLILSLSKISIKVAFSRKVEKGTLKKLGGLRHEKSTK 81

The following BLAST results are available for this feature:
BLAST of Lsi05G012920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G012920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5P9_CUCSA8.7e-1889.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G178515 PE=4 SV=1[more]
BLAST of Lsi05G012920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G012920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202177|gb|KGN57310.1|1.2e-1789.47hypothetical protein Csa_3G178515 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G012920.1Lsi05G012920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G012920Bhi01G001031Wax gourdlsiwgoB434
Lsi05G012920CsGy3G016400Cucumber (Gy14) v2cgyblsiB197
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G012920Cucumber (Chinese Long) v3cuclsiB229
Lsi05G012920Cucumber (Chinese Long) v3cuclsiB405
Lsi05G012920Cucumber (Chinese Long) v3cuclsiB399
Lsi05G012920Cucumber (Chinese Long) v3cuclsiB490
Lsi05G012920Watermelon (97103) v2lsiwmbB315
Lsi05G012920Watermelon (97103) v2lsiwmbB334
Lsi05G012920Watermelon (97103) v2lsiwmbB343
Lsi05G012920Bottle gourd (USVL1VR-Ls)lsilsiB008
Lsi05G012920Cucumber (Gy14) v1cgylsiB416
Lsi05G012920Cucumber (Gy14) v1cgylsiB490
Lsi05G012920Cucumber (Gy14) v1cgylsiB587
Lsi05G012920Cucurbita maxima (Rimu)cmalsiB288
Lsi05G012920Cucurbita maxima (Rimu)cmalsiB312
Lsi05G012920Cucurbita maxima (Rimu)cmalsiB387
Lsi05G012920Cucurbita maxima (Rimu)cmalsiB580
Lsi05G012920Cucurbita maxima (Rimu)cmalsiB836
Lsi05G012920Cucurbita moschata (Rifu)cmolsiB277
Lsi05G012920Cucurbita moschata (Rifu)cmolsiB300
Lsi05G012920Cucurbita moschata (Rifu)cmolsiB372
Lsi05G012920Cucurbita moschata (Rifu)cmolsiB560
Lsi05G012920Cucurbita moschata (Rifu)cmolsiB570
Lsi05G012920Cucurbita pepo (Zucchini)cpelsiB035
Lsi05G012920Cucurbita pepo (Zucchini)cpelsiB153
Lsi05G012920Cucurbita pepo (Zucchini)cpelsiB172
Lsi05G012920Cucurbita pepo (Zucchini)cpelsiB624
Lsi05G012920Wild cucumber (PI 183967)cpilsiB208
Lsi05G012920Wild cucumber (PI 183967)cpilsiB379
Lsi05G012920Wild cucumber (PI 183967)cpilsiB384
Lsi05G012920Wild cucumber (PI 183967)cpilsiB469
Lsi05G012920Cucumber (Chinese Long) v2culsiB210
Lsi05G012920Cucumber (Chinese Long) v2culsiB376
Lsi05G012920Cucumber (Chinese Long) v2culsiB380
Lsi05G012920Cucumber (Chinese Long) v2culsiB461
Lsi05G012920Melon (DHL92) v3.5.1lsimeB340
Lsi05G012920Melon (DHL92) v3.5.1lsimeB345
Lsi05G012920Melon (DHL92) v3.5.1lsimeB379
Lsi05G012920Watermelon (Charleston Gray)lsiwcgB322
Lsi05G012920Watermelon (Charleston Gray)lsiwcgB328
Lsi05G012920Watermelon (Charleston Gray)lsiwcgB336
Lsi05G012920Watermelon (97103) v1lsiwmB366
Lsi05G012920Watermelon (97103) v1lsiwmB373
Lsi05G012920Cucumber (Gy14) v2cgyblsiB342
Lsi05G012920Cucumber (Gy14) v2cgyblsiB346
Lsi05G012920Melon (DHL92) v3.6.1lsimedB356
Lsi05G012920Melon (DHL92) v3.6.1lsimedB357
Lsi05G012920Melon (DHL92) v3.6.1lsimedB362
Lsi05G012920Melon (DHL92) v3.6.1lsimedB397
Lsi05G012920Silver-seed gourdcarlsiB092
Lsi05G012920Silver-seed gourdcarlsiB791
Lsi05G012920Silver-seed gourdcarlsiB841
Lsi05G012920Silver-seed gourdcarlsiB852