Lsi05G012230 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G012230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	PAR1 protein
Location	chr05 : 20137374 .. 20138320 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGATAAAATGCGAGAGTCTAGAGAAAAGCAAATGCGCATTTGCAGTATCATGGTCGGGAAAAAGGTGTGTGCTTGAAAAGACAGTGAAACGTGGTGGAGAAGAAGCATTTACATGTCGAACGTCGAAGATTATTGAAGTGAAGGGATTAAGGAACAGAGTGGAAACCGAGGAGTGTGTCCAAGGTTGTGGCCTCGACCGAAACACCCTCGGCATCTCCTCCGATTCCTTCCTCGATACTCGCTTCACTCACACCCTTTGTTCCTCTCGCTGCTACGACCATTGTCCCAATGTCGTCCACCTCTTCTTCAACCTCGCTGCCGCTGAAGGTCACTTCACTACTTTGATAATCGTTTTGTTTTTTGCAATTTTTTTTTGTTTAAATACTATTTTTGTAGTTCTTTACTTTTAGTTTTGATTAATTTCAATTTATACACTTTTAACTTTGGTTCATTTTAATCATTATATTTTTCAAAATGTTTAGTTTGATCCTTGTACTTTTAAATTTGGAGCATTTTGGTTGTTGTACTTCTAAAAGGTGACCATTTTGTTCATTTCATTTTCATTTTCAAGAGATCAAAATAGTCTATTTTTTAAAGTTTAAGAACTAAAATGAACCAAAATAAACATTTTAAAAGTACCTATACCAAAATGAAGAAAAGAAAAGTATAGTAACCTATTAAACATTTTTTACTTGTCTCAGCTAGTTTAATAAACATTGGATTGTTGGCATTGGCAGGTGTGTTTCTTCCAAAACTTTGTGAAGGTCAAGGAAAAAATATGAGAAGAGAAATCTCGGAGATTAGAAGTTCTGGAATTGTTGCACCGGGACCGATTCAGTCGACTTCTATTTCGATAGCGCTCGCAGTCACACAAGGGCCAGTTCAGCTCAGCTCTCTTTCGTTTGCTCCGACACTCGCACCGACCACAAATGGAGCTTGA

mRNA sequence

ATGAAGAAGATAAAATGCGAGAGTCTAGAGAAAAGCAAATGCGCATTTGCAGTATCATGGTCGGGAAAAAGGTGTGTGCTTGAAAAGACAGTGAAACGTGGTGGAGAAGAAGCATTTACATGTCGAACGTCGAAGATTATTGAAGTGAAGGGATTAAGGAACAGAGTGGAAACCGAGGAGTGTGTCCAAGGTCAAGGAAAAAATATGAGAAGAGAAATCTCGGAGATTAGAAGTTCTGGAATTGTTGCACCGGGACCGATTCAGTCGACTTCTATTTCGATAGCGCTCGCAGTCACACAAGGGCCAGTTCAGCTCAGCTCTCTTTCGTTTGCTCCGACACTCGCACCGACCACAAATGGAGCTTGA

Coding sequence (CDS)

ATGAAGAAGATAAAATGCGAGAGTCTAGAGAAAAGCAAATGCGCATTTGCAGTATCATGGTCGGGAAAAAGGTGTGTGCTTGAAAAGACAGTGAAACGTGGTGGAGAAGAAGCATTTACATGTCGAACGTCGAAGATTATTGAAGTGAAGGGATTAAGGAACAGAGTGGAAACCGAGGAGTGTGTCCAAGGTCAAGGAAAAAATATGAGAAGAGAAATCTCGGAGATTAGAAGTTCTGGAATTGTTGCACCGGGACCGATTCAGTCGACTTCTATTTCGATAGCGCTCGCAGTCACACAAGGGCCAGTTCAGCTCAGCTCTCTTTCGTTTGCTCCGACACTCGCACCGACCACAAATGGAGCTTGA

Protein sequence

MKKIKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECVQGQGKNMRREISEIRSSGIVAPGPIQSTSISIALAVTQGPVQLSSLSFAPTLAPTTNGA

Homology

[Close]

BLAST of Lsi05G012230 vs. TrEMBL
Match: A0A0A0L8Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182150 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 4  IKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECVQ 63
          IKCESLEK+KCAFAVSWSGKRCVLEK+VKR GE+AFTCRTS+ IE   L+N VETEECV+
Sbjct: 33 IKCESLEKNKCAFAVSWSGKRCVLEKSVKRSGEDAFTCRTSE-IEADRLQNIVETEECVE 92

Query: 64 GQG 67
          G G
Sbjct: 93 GCG 94

[Close]

BLAST of Lsi05G012230 vs. TrEMBL
Match: V7C5S8_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_004G1144000g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 3  KIKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECV 62
          +++CE L K  CAFAVSW GKRCVLEK VKR GEEA+TCR+S+ IE +  +  +ETEEC+
Sbjct: 27 EVECERLSKDTCAFAVSWEGKRCVLEKRVKRSGEEAYTCRSSE-IETESEKGHIETEECI 86

Query: 63 QGQGKNMR 71
          +G G N +
Sbjct: 87 KGCGLNRK 93

[Close]

BLAST of Lsi05G012230 vs. TrEMBL
Match: A0A0A0L6J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182140 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 14 CAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECVQGQG 67
          CAFAVSW G RCVLEKTVK  GEE FTCRTSKI+EVK LRNRVETE+CV+  G
Sbjct: 2  CAFAVSWWGNRCVLEKTVKLDGEEGFTCRTSKIMEVKKLRNRVETEKCVRRCG 54

[Close]

BLAST of Lsi05G012230 vs. TrEMBL
Match: M1CXZ4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030006 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 4  IKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECVQ 63
          I CE+L K  CAFA+S +GKRCVLEK+++R GE+ +TCRTS+I     L+NR+ET+ C+Q
Sbjct: 29 ITCENLNKDSCAFAISSTGKRCVLEKSLRRSGEQVYTCRTSEIEADNKLKNRIETDNCIQ 88

Query: 64 GQGKN 69
            G N
Sbjct: 89 SCGVN 93

[Close]

BLAST of Lsi05G012230 vs. TrEMBL
Match: A0A0S3TAS7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G181900 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 3  KIKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECV 62
          +++CE L +  CAFAVSW GKRCVLEK VKR GEEA+TCRTS+ I+ +     +ETE+C+
Sbjct: 27 EVECERLSEDTCAFAVSWEGKRCVLEKRVKRSGEEAYTCRTSE-IQTETQNGLIETEDCI 86

Query: 63 QGQG 67
          +G G
Sbjct: 87 KGCG 89

[Close]

BLAST of Lsi05G012230 vs. TAIR10
Match: AT5G52390.1 (AT5G52390.1 PAR1 protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-13
Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 4  IKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECVQ 63
          +KCE+L+++ CAFAVS +GKRCVLEK++KR G E +TCR+S+ IE   + N +E++EC++
Sbjct: 26 VKCENLDENTCAFAVSSTGKRCVLEKSMKRSGIEVYTCRSSE-IEANKVTNIIESDECIK 85

Query: 64 GQG 67
            G
Sbjct: 86 ACG 87

[Close]

BLAST of Lsi05G012230 vs. TAIR10
Match: AT3G54040.1 (AT3G54040.1 PAR1 protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 2   KKIKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEEC 61
           + I CE+L  + C+F++S SGKRC+LE T    GE  FTCRTS  ++V+G+ N VET+EC
Sbjct: 24  ENIVCENLPTNMCSFSISASGKRCILE-TANVAGE--FTCRTS-AVDVEGIVNHVETDEC 83

Query: 62  VQGQGKNMRREISEIRSSGIVAPG 86
           V   G  + R+   I S  ++  G
Sbjct: 84  VSACG--VDRKTVGISSDSLMEAG 101

[Close]

BLAST of Lsi05G012230 vs. NCBI nr
Match: gi|449446155|ref|XP_004140837.1| (PREDICTED: uncharacterized protein LOC101212311 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 1  MKKIKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEE 60
          +KKIKCE LE + CAFAVSW G RCVLEKTVK  GEE FTCRTSKI+EVK LRNRVETE+
Sbjct: 28 LKKIKCEDLEINMCAFAVSWWGNRCVLEKTVKLDGEEGFTCRTSKIMEVKKLRNRVETEK 87

Query: 61 CVQGQG 67
          CV+  G
Sbjct: 88 CVRRCG 93

[Close]

BLAST of Lsi05G012230 vs. NCBI nr
Match: gi|449446033|ref|XP_004140776.1| (PREDICTED: uncharacterized protein LOC101216404 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 4  IKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECVQ 63
          IKCESLEK+KCAFAVSWSGKRCVLEK+VKR GE+AFTCRTS+ IE   L+N VETEECV+
Sbjct: 33 IKCESLEKNKCAFAVSWSGKRCVLEKSVKRSGEDAFTCRTSE-IEADRLQNIVETEECVE 92

Query: 64 GQG 67
          G G
Sbjct: 93 GCG 94

[Close]

BLAST of Lsi05G012230 vs. NCBI nr
Match: gi|659077486|ref|XP_008439231.1| (PREDICTED: uncharacterized protein LOC103484081 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 4  IKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECVQ 63
          IKC+SLEK+KCAFAVSWSGKRCVLEK+VKR GEEAFTCRTS+ IE   L+N VETEECV+
Sbjct: 33 IKCKSLEKNKCAFAVSWSGKRCVLEKSVKRSGEEAFTCRTSE-IEADRLQNIVETEECVK 92

Query: 64 GQG 67
          G G
Sbjct: 93 GCG 94

[Close]

BLAST of Lsi05G012230 vs. NCBI nr
Match: gi|659077484|ref|XP_008439229.1| (PREDICTED: uncharacterized protein LOC103484080 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 1  MKKIKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEE 60
          MKKIKCE L  + CAFAVSW GKRCVLEKTVK  GEE FTC+ SKI+EVK LRNRVET++
Sbjct: 1  MKKIKCEDLGINMCAFAVSWWGKRCVLEKTVKHDGEEGFTCQISKIMEVKKLRNRVETDK 60

Query: 61 CVQGQG 67
          CV+  G
Sbjct: 61 CVRRCG 66

[Close]

BLAST of Lsi05G012230 vs. NCBI nr
Match: gi|593703709|ref|XP_007152257.1| (hypothetical protein PHAVU_004G1144000g, partial [Phaseolus vulgaris])

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 3  KIKCESLEKSKCAFAVSWSGKRCVLEKTVKRGGEEAFTCRTSKIIEVKGLRNRVETEECV 62
          +++CE L K  CAFAVSW GKRCVLEK VKR GEEA+TCR+S+ IE +  +  +ETEEC+
Sbjct: 27 EVECERLSKDTCAFAVSWEGKRCVLEKRVKRSGEEAYTCRSSE-IETESEKGHIETEECI 86

Query: 63 QGQGKNMR 71
          +G G N +
Sbjct: 87 KGCGLNRK 93

The following BLAST results are available for this feature:

BLAST of Lsi05G012230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G012230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Q0_CUCSA	1.9e-18	79.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182150 PE=4 SV=1	[more]
V7C5S8_PHAVU	2.2e-14	58.82	Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_004G1144000g P...	[more]
A0A0A0L6J6_CUCSA	2.8e-14	79.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182140 PE=4 SV=1	[more]
M1CXZ4_SOLTU	1.2e-12	55.38	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030006 PE=4 SV=1	[more]
A0A0S3TAS7_PHAAN	1.6e-12	57.81	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G181900 PE=...	[more]

BLAST of Lsi05G012230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52390.1	2.8e-13	52.38	PAR1 protein	[more]
AT3G54040.1	1.9e-09	44.05	PAR1 protein	[more]

BLAST of Lsi05G012230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446155\|ref\|XP_004140837.1\|	1.6e-18	75.76	PREDICTED: uncharacterized protein LOC101212311 [Cucumis sativus]	[more]
gi\|449446033\|ref\|XP_004140776.1\|	2.7e-18	79.37	PREDICTED: uncharacterized protein LOC101216404 [Cucumis sativus]	[more]
gi\|659077486\|ref\|XP_008439231.1\|	4.7e-18	79.37	PREDICTED: uncharacterized protein LOC103484081 [Cucumis melo]	[more]
gi\|659077484\|ref\|XP_008439229.1\|	2.3e-17	72.73	PREDICTED: uncharacterized protein LOC103484080 [Cucumis melo]	[more]
gi\|593703709\|ref\|XP_007152257.1\|	3.1e-14	58.82	hypothetical protein PHAVU_004G1144000g, partial [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009489	PAR1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012230.1	Lsi05G012230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009489	PAR1	PFAM	PF06521	PAR1	coord: 4..66 score: 2.8
None	No IPR available	PANTHER	PTHR33649	FAMILY NOT NAMED	coord: 4..63 score: 2.7
None	No IPR available	PANTHER	PTHR33649:SF2	PAR1 PROTEIN	coord: 4..63 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G012230	Cucurbita maxima (Rimu)	cmalsiB587
Lsi05G012230	Cucurbita maxima (Rimu)	cmalsiB836
Lsi05G012230	Cucurbita moschata (Rifu)	cmolsiB300
Lsi05G012230	Cucurbita moschata (Rifu)	cmolsiB372
Lsi05G012230	Cucurbita moschata (Rifu)	cmolsiB567
Lsi05G012230	Cucurbita pepo (Zucchini)	cpelsiB035
Lsi05G012230	Cucurbita pepo (Zucchini)	cpelsiB172
Lsi05G012230	Cucurbita pepo (Zucchini)	cpelsiB618
Lsi05G012230	Wild cucumber (PI 183967)	cpilsiB208
Lsi05G012230	Cucumber (Chinese Long) v2	culsiB210
Lsi05G012230	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G012230	Watermelon (Charleston Gray)	lsiwcgB336
Lsi05G012230	Watermelon (97103) v1	lsiwmB366
Lsi05G012230	Cucumber (Gy14) v2	cgyblsiB193
Lsi05G012230	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G012230	Melon (DHL92) v3.6.1	lsimedB394
Lsi05G012230	Melon (DHL92) v3.6.1	lsimedB397
Lsi05G012230	Silver-seed gourd	carlsiB650
Lsi05G012230	Silver-seed gourd	carlsiB675
Lsi05G012230	Silver-seed gourd	carlsiB903
Lsi05G012230	Cucumber (Chinese Long) v3	cuclsiB229
Lsi05G012230	Watermelon (97103) v2	lsiwmbB331
Lsi05G012230	Watermelon (97103) v2	lsiwmbB334
Lsi05G012230	Wax gourd	lsiwgoB434
Lsi05G012230	Wax gourd	lsiwgoB443
Lsi05G012230	Bottle gourd (USVL1VR-Ls)	lsilsiB160
Lsi05G012230	Cucumber (Gy14) v1	cgylsiB143
Lsi05G012230	Cucurbita maxima (Rimu)	cmalsiB312
Lsi05G012230	Cucurbita maxima (Rimu)	cmalsiB387