Lsi05G010440 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G010440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA-binding protein-like
Locationchr05 : 17964488 .. 17964889 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCGACGAGGGGAAGCTTTTCATTGGAGGAATAGCTTGGGACACCTCCGAGGAGAAGCTTAGAGACTATTTCTCCCAATTCGGTGAAGTTATTCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCCCGTGGCTTTGGCTTTGTCGTCTTCTCTGATCCTTCCGTTCTTGATCAGGTTCTTCAAGATAAGCACACCATCGATGGCCGCCAGGTTTTTTTTTTTTCCCCTCGCCTCTTCTTCTGCAATTTTCTATCTGCATTACTTCGTTGTTTTATTTTGTTTTGTATTTCCTCCACGGTTTTGCTTTTTGTTGTTTTCATTATGGGGATTTTGGGAATCATGTTGTTGTGGCCTGTAGGTAGTGGTGGACTGTTGATTACTTTAATTTAG

mRNA sequence

ATGGACTCCGACGAGGGGAAGCTTTTCATTGGAGGAATAGCTTGGGACACCTCCGAGGAGAAGCTTAGAGACTATTTCTCCCAATTCGGTGAAGTTATTCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCCCGTGGCTTTGGCTTTGTCGTCTTCTCTGATCCTTCCGTTCTTGATCAGGTTCTTCAAGATAAGCACACCATCGATGGCCGCCAGGTTTTTTTTTTTTCCCCTCGCCTCTTCTTCTGCAATTTTCTATCTGCATTACTTCGTTGTTTTATTTTGTTTTGTATTTCCTCCACGGTTTTGCTTTTTGTTGTTTTCATTATGGGGATTTTGGGAATCATGTTGTTGTGGCCTGTAGGTAGTGGTGGACTGTTGATTACTTTAATTTAG

Coding sequence (CDS)

ATGGACTCCGACGAGGGGAAGCTTTTCATTGGAGGAATAGCTTGGGACACCTCCGAGGAGAAGCTTAGAGACTATTTCTCCCAATTCGGTGAAGTTATTCAAGCCGTTATTATGCGCGACAAGACCACTGGCCGTCCCCGTGGCTTTGGCTTTGTCGTCTTCTCTGATCCTTCCGTTCTTGATCAGGTTCTTCAAGATAAGCACACCATCGATGGCCGCCAGGTTTTTTTTTTTTCCCCTCGCCTCTTCTTCTGCAATTTTCTATCTGCATTACTTCGTTGTTTTATTTTGTTTTGTATTTCCTCCACGGTTTTGCTTTTTGTTGTTTTCATTATGGGGATTTTGGGAATCATGTTGTTGTGGCCTGTAGGTAGTGGTGGACTGTTGATTACTTTAATTTAG

Protein sequence

MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQVFFFSPRLFFCNFLSALLRCFILFCISSTVLLFVVFIMGILGIMLLWPVGSGGLLITLI
Homology
[Close]
BLAST of Lsi05G010440 vs. Swiss-Prot
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-29
Identity = 54/75 (72.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSD+GKLF+GGI+W+T E+KLR++F+ +GEV QA++MRDK TGRPRGFGFV+FSDPSVL
Sbjct: 1  MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61 DQVLQDKHTIDGRQV 76
          D+VLQ+KH+ID R+V
Sbjct: 61 DRVLQEKHSIDTREV 75

[Close]
BLAST of Lsi05G010440 vs. Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-20
Identity = 41/74 (55.41%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 3  SDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
          +D GK+FIGG++W TS E LRDYF ++G++ +A++M+D TT R RGFGFV FSDP+ +D+
Sbjct: 26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85

Query: 63 VL-QDKHTIDGRQV 76
          VL Q  H +DG++V
Sbjct: 86 VLTQGTHELDGKKV 99

[Close]
BLAST of Lsi05G010440 vs. Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-20
Identity = 36/70 (51.43%), Postives = 55/70 (78.57%), Query Frame = 1 

Query: 4   DEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQV 63
           ++GK+FIGG+ W+T+++ LRDYF QFGEV+   +MRD TTGR RGFGF+ F +P  +++V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220

Query: 64  LQDKHTIDGR 74
           +  +H +DG+
Sbjct: 221 MSKEHHLDGK 230

[Close]
BLAST of Lsi05G010440 vs. Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1 

Query: 6  GKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
          GKLF+GG+ W T++E LR YFSQ+GEV+  VIM+DKTT + RGFGFV F DP+ +  VL 
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 66 DK-HTIDGRQV 76
           + HT+DGR +
Sbjct: 70 SRPHTLDGRNI 80

[Close]
BLAST of Lsi05G010440 vs. Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1 

Query: 6  GKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQ 65
          GKLF+GG+ W T++E LR YFSQ+GEV+  VIM+DKTT + RGFGFV F DP+ +  VL 
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 66 DK-HTIDGRQV 76
           + HT+DGR +
Sbjct: 70 SRPHTLDGRNI 80

[Close]
BLAST of Lsi05G010440 vs. TrEMBL
Match: A0A0A0L8W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G608180 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.5e-36
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPS+L
Sbjct: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLL 60

Query: 61 DQVLQDKHTIDGRQV 76
          DQVLQDKHTIDGRQV
Sbjct: 61 DQVLQDKHTIDGRQV 75

[Close]
BLAST of Lsi05G010440 vs. TrEMBL
Match: B9IBE6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18470g PE=4 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-32
Identity = 70/93 (75.27%), Postives = 75/93 (80.65%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSDEGKLFIGGIAWDT+EE LRD+F+ +GEV Q VIMRDKTTGRPRGFGFVVFSDPS+L
Sbjct: 1  MDSDEGKLFIGGIAWDTTEETLRDHFNLYGEVSQVVIMRDKTTGRPRGFGFVVFSDPSLL 60

Query: 61 DQVLQDKHTIDGRQVFFFSP------RLFFCNF 88
          D VLQDKHTIDGR V   SP         FCNF
Sbjct: 61 DPVLQDKHTIDGRSVMTLSPFSSNSSNFLFCNF 93

[Close]
BLAST of Lsi05G010440 vs. TrEMBL
Match: U5G3V3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07790g PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-31
Identity = 62/75 (82.67%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSD+GKLFIGGI+W+TSEEKLRDYF Q+G+V+QAV+M+DKTTGRPRGFGFVVF+DP+VL
Sbjct: 1  MDSDQGKLFIGGISWETSEEKLRDYFGQYGDVLQAVVMKDKTTGRPRGFGFVVFADPAVL 60

Query: 61 DQVLQDKHTIDGRQV 76
          D VLQDKHTIDGR V
Sbjct: 61 DMVLQDKHTIDGRMV 75

[Close]
BLAST of Lsi05G010440 vs. TrEMBL
Match: A0A067K3U3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17642 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-31
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSDEGKLFIGGIAWDT+E+ LRD+FSQ+G+V Q VIMRDKTTGRPRGFGFVVFSDPS+L
Sbjct: 1  MDSDEGKLFIGGIAWDTTEDTLRDHFSQYGDVSQVVIMRDKTTGRPRGFGFVVFSDPSIL 60

Query: 61 DQVLQDKHTIDGRQV 76
          D+VLQDKHTIDGR V
Sbjct: 61 DRVLQDKHTIDGRTV 75

[Close]
BLAST of Lsi05G010440 vs. TrEMBL
Match: W9QSX8_9ROSA (DAZ-associated protein 1 OS=Morus notabilis GN=L484_005944 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-31
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          M+SDEGKLFIGGIAWDT+EE LRDYF Q+GEV Q VIMRDKTTGRPRGFGFVVFSDPSVL
Sbjct: 1  MESDEGKLFIGGIAWDTTEENLRDYFGQYGEVTQTVIMRDKTTGRPRGFGFVVFSDPSVL 60

Query: 61 DQVLQDKHTIDGRQV 76
          D VL DKHTIDGR V
Sbjct: 61 DTVLNDKHTIDGRTV 75

[Close]
BLAST of Lsi05G010440 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-31
Identity = 54/75 (72.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSD+GKLF+GGI+W+T E+KLR++F+ +GEV QA++MRDK TGRPRGFGFV+FSDPSVL
Sbjct: 1  MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61 DQVLQDKHTIDGRQV 76
          D+VLQ+KH+ID R+V
Sbjct: 61 DRVLQEKHSIDTREV 75

[Close]
BLAST of Lsi05G010440 vs. TAIR10
Match: AT2G33410.1 (AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-29
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          M+SD+GKLFIGGI+WDT E  LR+YFS FGEV+Q  +MR+K TGRPRGFGFV FSDP+V+
Sbjct: 1  MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60

Query: 61 DQVLQDKHTIDGRQV 76
          D+VLQDKH ID R V
Sbjct: 61 DRVLQDKHHIDNRDV 75

[Close]
BLAST of Lsi05G010440 vs. TAIR10
Match: AT5G55550.3 (AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          M+SD GKLFIGGI+WDT EE+LRDYFS +G+V++AVIMRD+ TGR RGFGF+VF+DP V 
Sbjct: 1  MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61 DQVLQDKHTIDGRQV 76
          ++V+ DKH IDGR V
Sbjct: 61 ERVIMDKHIIDGRTV 75

[Close]
BLAST of Lsi05G010440 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-28
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          M SD GKLFIGGI+WDT+EE+L++YFS FGEVI+AVI++D+TTGR RGFGFVVF+DP+V 
Sbjct: 1  MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61 DQVLQDKHTIDGRQV 76
          + V+ +KH IDGR V
Sbjct: 61 EIVITEKHNIDGRLV 75

[Close]
BLAST of Lsi05G010440 vs. TAIR10
Match: AT4G26650.1 (AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27
Identity = 49/73 (67.12%), Postives = 65/73 (89.04%), Query Frame = 1 

Query: 3  SDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQ 62
          SD GKLFIGGI+WDT EE+L++YF ++G++++AVIMRD+TTGR RGFGF+VF+DPSV ++
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71

Query: 63 VLQDKHTIDGRQV 76
          V+ DKH IDGR V
Sbjct: 72 VIMDKHIIDGRTV 84

[Close]
BLAST of Lsi05G010440 vs. NCBI nr
Match: gi|449468578|ref|XP_004151998.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 9.3e-36
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPS+L
Sbjct: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLL 60

Query: 61 DQVLQDKHTIDGRQV 76
          DQVLQDKHTIDGRQV
Sbjct: 61 DQVLQDKHTIDGRQV 75

[Close]
BLAST of Lsi05G010440 vs. NCBI nr
Match: gi|659093132|ref|XP_008447387.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 9.3e-36
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPS+L
Sbjct: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSLL 60

Query: 61 DQVLQDKHTIDGRQV 76
          DQVLQDKHTIDGRQV
Sbjct: 61 DQVLQDKHTIDGRQV 75

[Close]
BLAST of Lsi05G010440 vs. NCBI nr
Match: gi|566204969|ref|XP_002320621.2| (hypothetical protein POPTR_0014s18470g [Populus trichocarpa])

HSP 1 Score: 145.6 bits (366), Expect = 6.2e-32
Identity = 70/93 (75.27%), Postives = 75/93 (80.65%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSDEGKLFIGGIAWDT+EE LRD+F+ +GEV Q VIMRDKTTGRPRGFGFVVFSDPS+L
Sbjct: 1  MDSDEGKLFIGGIAWDTTEETLRDHFNLYGEVSQVVIMRDKTTGRPRGFGFVVFSDPSLL 60

Query: 61 DQVLQDKHTIDGRQVFFFSP------RLFFCNF 88
          D VLQDKHTIDGR V   SP         FCNF
Sbjct: 61 DPVLQDKHTIDGRSVMTLSPFSSNSSNFLFCNF 93

[Close]
BLAST of Lsi05G010440 vs. NCBI nr
Match: gi|743896293|ref|XP_011041422.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Populus euphratica])

HSP 1 Score: 143.3 bits (360), Expect = 3.1e-31
Identity = 62/75 (82.67%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSD+GKLFIGGI+W+TSEEKLRDYF Q+G+V+QAV+M+DKTTGRPRGFGFVVF+DP+VL
Sbjct: 1  MDSDQGKLFIGGISWETSEEKLRDYFGQYGDVLQAVVMKDKTTGRPRGFGFVVFADPAVL 60

Query: 61 DQVLQDKHTIDGRQV 76
          D VLQDKHTIDGR V
Sbjct: 61 DMVLQDKHTIDGRMV 75

[Close]
BLAST of Lsi05G010440 vs. NCBI nr
Match: gi|566189662|ref|XP_006378320.1| (hypothetical protein POPTR_0010s07790g [Populus trichocarpa])

HSP 1 Score: 143.3 bits (360), Expect = 3.1e-31
Identity = 62/75 (82.67%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVL 60
          MDSD+GKLFIGGI+W+TSEEKLRDYF Q+G+V+QAV+M+DKTTGRPRGFGFVVF+DP+VL
Sbjct: 1  MDSDQGKLFIGGISWETSEEKLRDYFGQYGDVLQAVVMKDKTTGRPRGFGFVVFADPAVL 60

Query: 61 DQVLQDKHTIDGRQV 76
          D VLQDKHTIDGR V
Sbjct: 61 DMVLQDKHTIDGRMV 75

The following BLAST results are available for this feature:
BLAST of Lsi05G010440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNP1_ARATH1.7e-2972.00Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 S... [more]
MSIR6_DROME4.2e-2055.41RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2... [more]
YHKF_SCHPO7.1e-2051.43Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
DAZP1_HUMAN1.2e-1957.75DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1[more]
DAZP1_MOUSE1.2e-1957.75DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=1 SV=2[more]
BLAST of Lsi05G010440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8W1_CUCSA6.5e-3698.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G608180 PE=4 SV=1[more]
B9IBE6_POPTR4.3e-3275.27Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18470g PE=4 SV=2[more]
U5G3V3_POPTR2.2e-3182.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07790g PE=4 SV=1[more]
A0A067K3U3_JATCU3.7e-3185.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17642 PE=4 SV=1[more]
W9QSX8_9ROSA4.8e-3186.67DAZ-associated protein 1 OS=Morus notabilis GN=L484_005944 PE=4 SV=1[more]
BLAST of Lsi05G010440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14300.19.6e-3172.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G33410.11.4e-2972.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G55550.31.5e-2869.33 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G07810.24.4e-2869.33 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G26650.12.2e-2767.12 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Lsi05G010440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449468578|ref|XP_004151998.1|9.3e-3698.67PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis sativus][more]
gi|659093132|ref|XP_008447387.1|9.3e-3698.67PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo][more]
gi|566204969|ref|XP_002320621.2|6.2e-3275.27hypothetical protein POPTR_0014s18470g [Populus trichocarpa][more]
gi|743896293|ref|XP_011041422.1|3.1e-3182.67PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Populus euphratica][more]
gi|566189662|ref|XP_006378320.1|3.1e-3182.67hypothetical protein POPTR_0010s07790g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G010440.1Lsi05G010440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 8..74
score: 2.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..78
score: 8.0
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 6..90
score: 1
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 3..75
score: 1.4
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 3..75
score: 1.22
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 2..75
score: 1.8
NoneNo IPR availablePANTHERPTHR24012:SF452SUBFAMILY NOT NAMEDcoord: 2..75
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G010440MELO3C012850.2Melon (DHL92) v3.6.1lsimedB370
Lsi05G010440MELO3C023033.2Melon (DHL92) v3.6.1lsimedB379
Lsi05G010440Cla97C06G116940Watermelon (97103) v2lsiwmbB342
Lsi05G010440Cla97C07G129560Watermelon (97103) v2lsiwmbB346
Lsi05G010440Bhi12G001392Wax gourdlsiwgoB425
Lsi05G010440Bhi05G000127Wax gourdlsiwgoB459
Lsi05G010440Cp4.1LG15g01000Cucurbita pepo (Zucchini)cpelsiB209
Lsi05G010440Cp4.1LG12g01260Cucurbita pepo (Zucchini)cpelsiB124
Lsi05G010440Cp4.1LG17g02210Cucurbita pepo (Zucchini)cpelsiB269
Lsi05G010440CsGy2G010170Cucumber (Gy14) v2cgyblsiB117
Lsi05G010440CsGy3G024950Cucumber (Gy14) v2cgyblsiB185
Lsi05G010440Carg10980Silver-seed gourdcarlsiB984
Lsi05G010440CsaV3_3G028220Cucumber (Chinese Long) v3cuclsiB219
Lsi05G010440CsaV3_2G012530Cucumber (Chinese Long) v3cuclsiB140
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi05G010440Lsi09G012040Bottle gourd (USVL1VR-Ls)lsilsiB012
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G010440Wax gourdlsiwgoB453
Lsi05G010440Bottle gourd (USVL1VR-Ls)lsilsiB156
Lsi05G010440Cucumber (Gy14) v1cgylsiB011
Lsi05G010440Cucumber (Gy14) v1cgylsiB417
Lsi05G010440Cucumber (Gy14) v1cgylsiB621
Lsi05G010440Cucurbita maxima (Rimu)cmalsiB247
Lsi05G010440Cucurbita maxima (Rimu)cmalsiB486
Lsi05G010440Cucurbita maxima (Rimu)cmalsiB585
Lsi05G010440Cucurbita maxima (Rimu)cmalsiB769
Lsi05G010440Cucurbita maxima (Rimu)cmalsiB840
Lsi05G010440Cucurbita moschata (Rifu)cmolsiB235
Lsi05G010440Cucurbita moschata (Rifu)cmolsiB470
Lsi05G010440Cucurbita moschata (Rifu)cmolsiB565
Lsi05G010440Cucurbita moschata (Rifu)cmolsiB761
Lsi05G010440Cucurbita moschata (Rifu)cmolsiB824
Lsi05G010440Cucurbita pepo (Zucchini)cpelsiB508
Lsi05G010440Cucurbita pepo (Zucchini)cpelsiB616
Lsi05G010440Cucurbita pepo (Zucchini)cpelsiB716
Lsi05G010440Wild cucumber (PI 183967)cpilsiB127
Lsi05G010440Wild cucumber (PI 183967)cpilsiB199
Lsi05G010440Wild cucumber (PI 183967)cpilsiB213
Lsi05G010440Cucumber (Chinese Long) v2culsiB129
Lsi05G010440Cucumber (Chinese Long) v2culsiB200
Lsi05G010440Cucumber (Chinese Long) v2culsiB215
Lsi05G010440Melon (DHL92) v3.5.1lsimeB356
Lsi05G010440Melon (DHL92) v3.5.1lsimeB364
Lsi05G010440Melon (DHL92) v3.5.1lsimeB382
Lsi05G010440Watermelon (Charleston Gray)lsiwcgB337
Lsi05G010440Watermelon (Charleston Gray)lsiwcgB344
Lsi05G010440Watermelon (Charleston Gray)lsiwcgB348
Lsi05G010440Watermelon (97103) v1lsiwmB356
Lsi05G010440Watermelon (97103) v1lsiwmB367
Lsi05G010440Watermelon (97103) v1lsiwmB383
Lsi05G010440Cucumber (Gy14) v2cgyblsiB204
Lsi05G010440Melon (DHL92) v3.6.1lsimedB398
Lsi05G010440Silver-seed gourdcarlsiB211
Lsi05G010440Silver-seed gourdcarlsiB689
Lsi05G010440Silver-seed gourdcarlsiB717
Lsi05G010440Silver-seed gourdcarlsiB879
Lsi05G010440Cucumber (Chinese Long) v3cuclsiB234
Lsi05G010440Watermelon (97103) v2lsiwmbB335