Lsi05G009790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G009790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	CCR4-NOT transcription complex subunit 4
Location	chr05 : 17099686 .. 17100559 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAATGGATGCCCTCTTATCATCCCTTGTGCAGCTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTCTAAAAGTGTCGATGTCCCGTACAACAACTAGAGTCATTCAACAATTTCCTAATAATACGTGTAGTGTGTAAGTTCAAATGTTCATATGGCAATGACTAACCTATTTTTTCCCCTTAAAACAAATTATTTTTATTATTTACGTAGGTTATTTAACTTTCTTATATTTCATTACATAGTAAATTCCCTCTTTGGAACATTTTCTTCATATGGTATCTACACGAAGGCTGAATAGCTTAGTTTGAATTGGGCATTGACATAATTCTTATTCTGTGCTCTACTTAGGTGTATCATGTATGCATTCAAAAATATTTATTTATGTGTTATGTCATTATTTAACTTTTTTGGGTTAGATATATTACATACTCAAAAGAGGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAATTTTTCTTGGAGGGCAAACCATTAAGGTTAGTGCATATATGAGTTGTAAATTCTAGAGTACATCTTGAGTATTCTAAGTAACGTATTGGCGAAGATTTTGTAATTTGTTTTCTCTGGGTGCCTCAATATTAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGGTATGCATTTTATAATTTGTTTCCCTTGTTTTTGAATTTTGTAGTTTTACCAATGAAAATTTCACAACTTCTACATCTGCTTTAGATCATAATGTTATCAACTAATGTTTCAGCCCTGCACCAACCCTGATTGTTTGTATTTACACGAGGTTGGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACA

mRNA sequence

ATGGAACTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTCTAAAAGTGTCGATGTCCCGTACAACAACTAGAGTCATTCAACAATTTCCTAATAATACGTGTAGTGTATATATTACATACTCAAAAGAGGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAATTTTTCTTGGAGGGCAAACCATTAAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGCCCTGCACCAACCCTGATTGTTTGTATTTACACGAGGTTGGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACA

Coding sequence (CDS)

ATGGAACTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTCTAAAAGTGTCGATGTCCCGTACAACAACTAGAGTCATTCAACAATTTCCTAATAATACGTGTAGTGTATATATTACATACTCAAAAGAGGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAATTTTTCTTGGAGGGCAAACCATTAAGGGCATGCTTTGGAACGACAAAGTATTGTCATGCTTGGTTGAGGAATGTGCCCTGCACCAACCCTGATTGTTTGTATTTACACGAGGTTGGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACA

Protein sequence

MELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT

Homology

[Close]

BLAST of Lsi05G009790 vs. Swiss-Prot
Match: CNOT4_HUMAN (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           E+L+R EYFG++GK+ KV ++ +T+    Q P+   S Y+TY + E+ +R IQ V+   +
Sbjct: 124 EVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVV 183

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 109
           +G+ L+A  GTTKYC  +L+N+ C  PDC+YLHE+G +  SFTK+E+
Sbjct: 184 DGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEM 228

[Close]

BLAST of Lsi05G009790 vs. Swiss-Prot
Match: CNOT4_MOUSE (CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           E+L+R EYFG++GK+ KV ++ +T+    Q P+   S Y+TY + E+ +R IQ V+   +
Sbjct: 124 EVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVV 183

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 109
           +G+ L+A  GTTKYC  +L+N+ C  PDC+YLHE+G +  SFTK+E+
Sbjct: 184 DGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEM 228

[Close]

BLAST of Lsi05G009790 vs. Swiss-Prot
Match: YAC4_SCHPO (Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16C9.04c PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-22
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = 1


Query: 1   MELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFF 60
           + +L+  EYFGQYGK++K+++++   +      N    VYITY ++E+  R I  +    
Sbjct: 133 INVLKGPEYFGQYGKIIKIAINK---KAAANSANGHVGVYITYQRKEDAARAIAAIDGSV 192

Query: 61  LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIIS 111
            +G+ LRA +GTTKYC ++LRN  C NP C+YLHE G + DS+TK+++ S
Sbjct: 193 SDGRHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLAS 239

[Close]

BLAST of Lsi05G009790 vs. Swiss-Prot
Match: NOT4_YEAST (General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-21
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 4   LQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCS-----------VYITYSKEEEVVRC 63
           L+  +YFGQYGK+ K+ ++R T        NNT S           VYIT+  +++  RC
Sbjct: 157 LKSEKYFGQYGKINKIVVNRKTPH-----SNNTTSEHYHHHSPGYGVYITFGSKDDAARC 216

Query: 64  IQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 109
           I  V   +++G+ ++A +GTTKYC ++LR +PC NP+C++LHE G + DSF K E+
Sbjct: 217 IAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADSFNKREL 267

[Close]

BLAST of Lsi05G009790 vs. TrEMBL
Match: A0A0A0KC75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G296980 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.3e-57
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYS+EEE VRCIQNVHQF L
Sbjct: 201 DLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSREEEAVRCIQNVHQFVL 260

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 261 EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 312

[Close]

BLAST of Lsi05G009790 vs. TrEMBL
Match: A0A151TN31_CAJCA (CCR4-NOT transcription complex subunit 4 OS=Cajanus cajan GN=KK1_022084 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-54
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT   VIQQFPN+TCSVYITYSKEEE +RCIQNVH F L
Sbjct: 125 DLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVL 184

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EG+PLRACFGTTKYCHAWLRNVPC+NPDCLYLHE+GSQEDSFTKDEIISAYT
Sbjct: 185 EGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYT 236

[Close]

BLAST of Lsi05G009790 vs. TrEMBL
Match: M5W8G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000664mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-54
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT   +IQQFPNNTCSVYITYSKEEE VRCIQNVH F L
Sbjct: 126 DLLQRREYFGQYGKVLKVSMSRTAAGIIQQFPNNTCSVYITYSKEEEAVRCIQNVHGFLL 185

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           +G+ LRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 186 DGRSLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237

[Close]

BLAST of Lsi05G009790 vs. TrEMBL
Match: A0A067GCH9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001872mg PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.4e-54
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT   VIQQFPNNTCSVYITYSKEEE VRCIQ+VH F L
Sbjct: 126 DLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 185

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EGK L+ACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 186 EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 237

[Close]

BLAST of Lsi05G009790 vs. TrEMBL
Match: A0A0R0H6J3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G329600 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.4e-54
Identity = 98/112 (87.50%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           + LQ+REYFGQYGKVLKVSMSRTT  V+QQFPNNTCSVYITYSKEEE +RCIQNVH F L
Sbjct: 161 DFLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVL 220

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EG+PLRACFGTTKYCHAWLRN+PC+NPDCLYLHE+GSQEDSFTKDEIISAYT
Sbjct: 221 EGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYT 272

[Close]

BLAST of Lsi05G009790 vs. TAIR10
Match: AT5G60170.2 (AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-54
Identity = 96/112 (85.71%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQ +EYFGQYGKVLKVSMSRT + VIQQFPNNTCSVYITY KEEE VRCIQ VH F L
Sbjct: 125 DLLQHKEYFGQYGKVLKVSMSRTASGVIQQFPNNTCSVYITYGKEEEAVRCIQAVHGFIL 184

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           +GKPL+ACFGTTKYCHAWLRNV C NPDCLYLHEVGSQ+DSFTKDEIISAYT
Sbjct: 185 DGKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYT 236

[Close]

BLAST of Lsi05G009790 vs. TAIR10
Match: AT3G45630.1 (AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-53
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQR+EYFGQYGKVLKVSMSRT T +IQQFPNNTCSVYITY KEEE +RCIQ+VH F L
Sbjct: 124 DLLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSVHGFIL 183

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           +GK L+ACFGTTKYCHAWLRNV C N DCLYLHEVGSQEDSFTKDEIISA+T
Sbjct: 184 DGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHT 235

[Close]

BLAST of Lsi05G009790 vs. TAIR10
Match: AT2G28540.2 (AT2G28540.2 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 189.5 bits (480), Expect = 1.1e-48
Identity = 81/111 (72.97%), Postives = 99/111 (89.19%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           ++ QRREYFGQYGKV+KV+MSRT    +QQFPNNTCSVYITYSKEEE +RCI++VH F L
Sbjct: 124 DMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFIL 183

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAY 113
           +G+ L+ACFGT KYCHAWLRN+PC+N +CLYLHE+G+QEDSF+KDE ISA+
Sbjct: 184 DGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAH 234

[Close]

BLAST of Lsi05G009790 vs. NCBI nr
Match: gi|659127764|ref|XP_008463877.1| (PREDICTED: dentin sialophosphoprotein-like isoform X4 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF L
Sbjct: 125 DLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVL 184

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 185 EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 236

[Close]

BLAST of Lsi05G009790 vs. NCBI nr
Match: gi|659127762|ref|XP_008463876.1| (PREDICTED: dentin sialophosphoprotein-like isoform X3 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF L
Sbjct: 125 DLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVL 184

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 185 EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 236

[Close]

BLAST of Lsi05G009790 vs. NCBI nr
Match: gi|659127760|ref|XP_008463875.1| (PREDICTED: dentin sialophosphoprotein-like isoform X2 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF L
Sbjct: 125 DLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVL 184

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 185 EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 236

[Close]

BLAST of Lsi05G009790 vs. NCBI nr
Match: gi|659127756|ref|XP_008463873.1| (PREDICTED: dentin sialophosphoprotein-like isoform X1 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF L
Sbjct: 125 DLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVL 184

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 185 EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 236

[Close]

BLAST of Lsi05G009790 vs. NCBI nr
Match: gi|659127766|ref|XP_008463878.1| (PREDICTED: dentin sialophosphoprotein-like isoform X5 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 2   ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFL 61
           +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF L
Sbjct: 125 DLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSKEEEAVRCIQNVHQFVL 184

Query: 62  EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 114
           EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT
Sbjct: 185 EGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYT 236

The following BLAST results are available for this feature:

BLAST of Lsi05G009790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CNOT4_HUMAN	1.3e-22	44.86	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3	[more]
CNOT4_MOUSE	1.3e-22	44.86	CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2	[more]
YAC4_SCHPO	8.5e-22	41.82	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharo...	[more]
NOT4_YEAST	4.2e-21	40.52	General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisia...	[more]

BLAST of Lsi05G009790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC75_CUCSA	4.3e-57	94.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G296980 PE=4 SV=1	[more]
A0A151TN31_CAJCA	2.0e-54	89.29	CCR4-NOT transcription complex subunit 4 OS=Cajanus cajan GN=KK1_022084 PE=4 SV=...	[more]
M5W8G1_PRUPE	2.0e-54	90.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000664mg PE=4 SV=1	[more]
A0A067GCH9_CITSI	3.4e-54	91.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001872mg PE=4 SV=1	[more]
A0A0R0H6J3_SOYBN	3.4e-54	87.50	Uncharacterized protein OS=Glycine max GN=GLYMA_13G329600 PE=4 SV=1	[more]

BLAST of Lsi05G009790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60170.2	1.1e-54	85.71	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G45630.1	1.5e-53	83.93	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G28540.2	1.1e-48	72.97	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Lsi05G009790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127764\|ref\|XP_008463877.1\|	2.8e-57	95.54	PREDICTED: dentin sialophosphoprotein-like isoform X4 [Cucumis melo]	[more]
gi\|659127762\|ref\|XP_008463876.1\|	2.8e-57	95.54	PREDICTED: dentin sialophosphoprotein-like isoform X3 [Cucumis melo]	[more]
gi\|659127760\|ref\|XP_008463875.1\|	2.8e-57	95.54	PREDICTED: dentin sialophosphoprotein-like isoform X2 [Cucumis melo]	[more]
gi\|659127756\|ref\|XP_008463873.1\|	2.8e-57	95.54	PREDICTED: dentin sialophosphoprotein-like isoform X1 [Cucumis melo]	[more]
gi\|659127766\|ref\|XP_008463878.1\|	2.8e-57	95.54	PREDICTED: dentin sialophosphoprotein-like isoform X5 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009790.1	Lsi05G009790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 7..70 score: 8.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 7..82 score: 1.1
None	No IPR available	PANTHER	PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	coord: 2..113 score: 3.3
None	No IPR available	PANTHER	PTHR12603:SF3	RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 2..113 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G009790	Melon (DHL92) v3.6.1	lsimedB379
Lsi05G009790	Melon (DHL92) v3.6.1	lsimedB398
Lsi05G009790	Silver-seed gourd	carlsiB211
Lsi05G009790	Silver-seed gourd	carlsiB689
Lsi05G009790	Silver-seed gourd	carlsiB717
Lsi05G009790	Cucumber (Chinese Long) v3	cuclsiB140
Lsi05G009790	Cucumber (Chinese Long) v3	cuclsiB234
Lsi05G009790	Watermelon (97103) v2	lsiwmbB336
Lsi05G009790	Watermelon (97103) v2	lsiwmbB342
Lsi05G009790	Watermelon (97103) v2	lsiwmbB346
Lsi05G009790	Wax gourd	lsiwgoB459
Lsi05G009790	Bottle gourd (USVL1VR-Ls)	lsilsiB012
Lsi05G009790	Bottle gourd (USVL1VR-Ls)	lsilsiB157
Lsi05G009790	Cucumber (Gy14) v1	cgylsiB418
Lsi05G009790	Cucurbita maxima (Rimu)	cmalsiB247
Lsi05G009790	Cucurbita maxima (Rimu)	cmalsiB486
Lsi05G009790	Cucurbita maxima (Rimu)	cmalsiB585
Lsi05G009790	Cucurbita maxima (Rimu)	cmalsiB840
Lsi05G009790	Cucurbita moschata (Rifu)	cmolsiB235
Lsi05G009790	Cucurbita moschata (Rifu)	cmolsiB470
Lsi05G009790	Cucurbita moschata (Rifu)	cmolsiB565
Lsi05G009790	Cucurbita pepo (Zucchini)	cpelsiB209
Lsi05G009790	Cucurbita pepo (Zucchini)	cpelsiB269
Lsi05G009790	Cucurbita pepo (Zucchini)	cpelsiB616
Lsi05G009790	Cucurbita pepo (Zucchini)	cpelsiB716
Lsi05G009790	Wild cucumber (PI 183967)	cpilsiB127
Lsi05G009790	Wild cucumber (PI 183967)	cpilsiB213
Lsi05G009790	Cucumber (Chinese Long) v2	culsiB129
Lsi05G009790	Cucumber (Chinese Long) v2	culsiB215
Lsi05G009790	Melon (DHL92) v3.5.1	lsimeB364
Lsi05G009790	Melon (DHL92) v3.5.1	lsimeB382
Lsi05G009790	Watermelon (Charleston Gray)	lsiwcgB338
Lsi05G009790	Watermelon (Charleston Gray)	lsiwcgB344
Lsi05G009790	Watermelon (Charleston Gray)	lsiwcgB348
Lsi05G009790	Watermelon (97103) v1	lsiwmB356
Lsi05G009790	Watermelon (97103) v1	lsiwmB367
Lsi05G009790	Watermelon (97103) v1	lsiwmB383
Lsi05G009790	Cucumber (Gy14) v2	cgyblsiB117
Lsi05G009790	Cucumber (Gy14) v2	cgyblsiB206