Lsi05G009040 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G009040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_55
Location	chr05 : 16212314 .. 16215719 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAATAGGAATCAAGAACAAGGACAACACAATTGCGCAAGATTCAACATCAGGGCACGATCACCATCTCCAGCAAGAAATCAATCCTAGTAAACTTTTTAAGAAATCAAGAAACAGAGTCTTCCAGCAATGATGAACTTCTTTGAAGATTTTCCAAGAATAGGCAACTAATAAGCATTAATCATGACCAAGAACATGAAAGCCAGCCACCATGATCTCCACATCGTCCTCTCCTCTCTTTCAACGGCTCAGAGTCGCCATCGCCACCTCTCTCTGGTTCAATGCCACTGCCGCTGTATTTCTTGCACCCGTGCCTCTGCAGCCTCCCTCTTAGAGGGTTTGCACTCATTTTCTACTCTCTCTTTGTTTCTGCATCAAGGGAGAAGAGAGCTTATGGTGGAAGTATGGTGGTCGCTATTGGGGGCAGCTATTCCAGCAGTAGTTGCAGAGCAAGCATACAAAATGAGGAGGCATTCTGAGGAACACAGAATAAAGACTGCTAGGGAAAGGGAGAAGAATTCGGATGACATTTTTGTCTGTGAGAGGGTCTGCACATCAAAGAGAATGTTGAAAAAGGTAGGGTCTTTCTCGAAAGACCCAATTCCTGATACTTGCGTGACTGTCCGTGGATTATCTGAACTTGATGCCTACACAGATGCATGCGCTCGCACTGTTTGTGTGAACCAGCATAAAGTACCAAACTGCAATGACGTTTGTCTTAGGAGATGCCAGAGTGAATGTCTTAAGCTTTCGGCTTCACATTCATCTTAGTGAAATGATATGATGAGTAAATAACGCAGTTTTTCTAGTATTGCATTTTGGATTGCGAACATTGGCCTAGAACTTTTGGCTTTCTGGAGATGATATGAAATGTTTTCTCAATTTACCCATGTTCCTCTTGTTAAAAGAACATGACAGCCAGCCACAAGACTACAAAATGAAGATTGACATGCCAACATTTAAGAAAAAGATTAATAGCCTTTCAAACAACAGAATACTAACTAACCCAACATTAGCAAGAACCAAGACTCCATCATACATGGTGATCTCTAAAAAGAAGTTTATATGGAGCACCCACCTAGATTTGATACCAAGAAGCAGAGTGATAAAGTTTGTAGTCTTAGAAAATCTTTGTAAGAAAATCTTTGTATGGTTTAAAACAGAGTCCACGTGCATGGTTTGATAAATTTGGTGAACCACTTCAAAATTTTGGTATGAAGAAGAATAAGTCTGATCACTTTATTTTCTACCAACGATCCAAGAGTGATATTACTTTACATGTTGTATATGTTGATGATATTGTTATCACAGGAAATGATAAGTTAGGTATATCTTCTCGTAAAACCTTCCTTTACTTCCCCAACTCAGAATCCACAAAGAACCTCATGACCCGATGAACATTTCATAACCAAATTTGAGCATCTCAATTGTTCGAATAAACCATGAGACAATAGAAGTTGACCCGCCTGATAACCTCAAGGCAGACTCTAATAGTAATAGGTGAATCTGTTTCATTTTGCTATTGTTGGGATAAAGAACAATCACATTGCTAGGACAAGGTTTTCAAAAGGAAGGTGCAACAAGAGCAAACCTAATAGATCAATCTAAGTAGTTCACCTTTTAAGAGCTACAAAACGAAAAGAAATGAATAAGAGAAAACCAAAGAGATGGAATTAACCGTTCTGCATGTGAGTTGGTTACAACACCAATAGTAGACTTGAGAGATGCTACCCAGATAAAGTAAGGGTAAAAGTTAACTGGTTAAGCTTGTCAATAGATTTAGAAGGAACAATAAATCTTTCAAATTAGTAGGACTGTGAGCTAAGAAGCACGGACACTTTAGTTTGGTTAGCGTGTCCGTGTCCGACACGTGTCGGACACTCCGACACTCAGATACTTATTGGACACGTATCGAACACTTGTTAGTGTAACAAATGTGTTAGACATGCATTGAACACTTGTTGAGTAGACTAAAAAGACACATATATGACAATAATAATAACTTTTTAGTGTGAACTTTAAGGTAAGTCTTTTAAGCATATAAATGCATCAACCCGTTTACTTTCAATTTTATATTGGTATGAAATGATATAAATTTTTAAAAAATGTATATTTTAATAAACATGTCATTGCCGTGTCGTGTCCTAGATATTTAAAATATGGAGTGTCGCCGTGTCCGTGTCCGTGTCGTTGTCGTGTCTCGTATCTGTATCCGTGCTTCTTAGATTGTGAGTATCATAGATCCAATTTCTATCTTAGACTATAAGCAGAAGAAGATTGAATGAAAAAAAAAAAAAAAAAAAAAACCAAATTTGTCCACATCAAGGTTTAAACATTATGAGACAAAATCTTTCAGACGGATATGAAAAGGGGTAGAGTCGCCAAGAAGGAAGAGGGCTAATAACAGGTCAATGAAAAATATATGGAGAGGAAAAACTGATTCTCATTGAATGATGAGAAAAAGCCTCTAATTATATCTATACAGTGCTAGAGTTAATTTAATTAAGAATAAATCTAACTCTAGTTACAAAATAAGAATTATAGGTAACAAACTAACTACAATCACTAAAATGTAAAAATAAAAACGCTAAAATACCTTTTGGAATATTGGATACTCAGCTTTGAATCTTGTACAGGCAAATTCCTGTGCCTCCTGGCTCGATCCAGGTTCCTGATTCAAAAATTGATTGCATGGAAAAGCCAAGATCTCAAGTCCTGGAAATCAGGGTATAGATACAGTTAACGAAGTAAAGAAGCTAATGGACCAAACTAAACCAAAGAGAAGATTATAGTATAGCCTTCAAGGAAACTCTAATAGTCCATCATTGCACAAAAGAAGAGGAGGAACCAATACCTGTAAGAAATAAAAATCTTGCTAACATGAAAATTAGGAAAATCAATAGAAGTAGAAGCAAGAAACGTAAAGACCTTTTTCTTTGTATTTGCTGTAAAGTTCCGTCAGCTGGGTATAATTTGAATCTGTGTAACCACTGCCCAAACAATTCAAAATTCTCTAGGAATTAGAACCCCATGAATTCGAGTAACCAAGAGGAACAAAGTTCAGAGGAAAAGAAGACGCACCATTTGGAAGCAACATTTACCACAAGAAGAACCTTTCCCCGGTAGATGCTAAGGTCCACGTCTTGTCCTCTGGCATCCTTCAACAAGCCAAGAGACTTAACTTCGTAAATTTCCGTTTTGAAGCGTCTTTGGGAGGAGAACAAGCCAAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGCCAGGAAAGCAGATGAGAATTTACCTTCACCACGAATTCATGAATGGACTTCTCAGAGACTGATTGAGAAGCACCCATTTTCTTCTCTCTCTTCTGTTCTTGTTCTTCTCAGGCAGGATATCCTGTTTATTGATGTTTTATAA

mRNA sequence

ATGCAAGAAATAGGAATCAAGAACAAGGACAACACAATTGCGCAAGATTCAACATCAGGGCACGATCACCATCTCCAGCAAGAAATCAATCCTACTATTCCAGCAGTAGTTGCAGAGCAAGCATACAAAATGAGGAGGCATTCTGAGGAACACAGAATAAAGACTGCTAGGGAAAGGGAGAAGAATTCGGATGACATTTTTGTCTGTGAGAGGGTCTGCACATCAAAGAGAATGTTGAAAAAGGTAGGGTCTTTCTCGAAAGACCCAATTCCTGATACTTGCGTGACTGTCCGTGGATTATCTGAACTTGATGCCTACACAGATGCATGCGCTCGCACTGTTTGTGTGAACCAGCATAAAGTACCAAACTGCAATGACGTTTGTCTTAGGAGATGCCAGAGTGAATGTCTTAAGCTTTCGGCTTCACATTCATCTTAGCAAATTCCTGTGCCTCCTGGCTCGATCCAGGTTCCTGATTCAAAAATTGATTGCATGGAAAAGCCAAGATCTCAAGTCCTGGAAATCAGGTCCATCATTGCACAAAAGAAGAGGAGGAACCAATACCTAGGAAAAGAAGACGCACCATTTGGAAGCAACATTTACCACAAGAAGAACCTTTCCCCGGTAGATGCTAAGGTCCACGTCTTGTCCTCTGGCATCCTTCAACAAGCCAAGAGACTTAACTTCGTAAATTTCCGTTTTGAAGCGTCTTTGGGAGGAGAACAAGCCAAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGCCAGGAAAGCAGATGAGAATTTACCTTCACCACGAATTCATGAATGGACTTCTCAGAGACTGATTGAGAAGCACCCATTTTCTTCTCTCTCTTCTGTTCTTGTTCTTCTCAGGCAGGATATCCTGTTTATTGATGTTTTATAA

Coding sequence (CDS)

ATGCAAGAAATAGGAATCAAGAACAAGGACAACACAATTGCGCAAGATTCAACATCAGGGCACGATCACCATCTCCAGCAAGAAATCAATCCTACTATTCCAGCAGTAGTTGCAGAGCAAGCATACAAAATGAGGAGGCATTCTGAGGAACACAGAATAAAGACTGCTAGGGAAAGGGAGAAGAATTCGGATGACATTTTTGTCTGTGAGAGGGTCTGCACATCAAAGAGAATGTTGAAAAAGGTAGGGTCTTTCTCGAAAGACCCAATTCCTGATACTTGCGTGACTGTCCGTGGATTATCTGAACTTGATGCCTACACAGATGCATGCGCTCGCACTGTTTGTGTGAACCAGCATAAAGTACCAAACTGCAATGACGTTTGTCTTAGGAGATGCCAGAGTGAATGTCTTAAGCTTTCGGCTTCACATTCATCTTAG

Protein sequence

MQEIGIKNKDNTIAQDSTSGHDHHLQQEINPTIPAVVAEQAYKMRRHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS

Homology

[Close]

BLAST of Lsi05G009040 vs. Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.4e-45
Identity = 89/118 (75.42%), Postives = 105/118 (88.98%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKMR-RHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           I   +PA++A QA++++ RH EE RIK+AR REK+SD+IFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   IGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV G+SELDA +DACARTVCVNQH+V N ND+CLRRCQSECLKLS+S SS
Sbjct: 69  DPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKLSSSSSS 126

[Close]

BLAST of Lsi05G009040 vs. TrEMBL
Match: A0A0A0KJ71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486990 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKM-RRHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAVVA Q YKM RRHSEE RIKTAR REKNSDDIFVCERVCTSKRMLKKVGSFSK
Sbjct: 9   LGAAIPAVVAGQVYKMKRRHSEEQRIKTARGREKNSDDIFVCERVCTSKRMLKKVGSFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV GLSELDA TDACARTVCVNQH+VPN NDVCLRRCQSECLKLSAS+SS
Sbjct: 69  DPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSASYSS 126

[Close]

BLAST of Lsi05G009040 vs. TrEMBL
Match: A0A0D2SQP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G245000 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.8e-46
Identity = 93/118 (78.81%), Postives = 108/118 (91.53%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKMRR-HSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAV+A QA++M++ H+EE RIK+AR REK+SDDIFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   LGAAIPAVIAGQAFRMKKKHAEEERIKSARGREKSSDDIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV G+SELDA +DACARTVCVNQH+VPN ND+CLRRCQSECL+LSASHSS
Sbjct: 69  DPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHSS 126

[Close]

BLAST of Lsi05G009040 vs. TrEMBL
Match: A0A0J8C4P0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155120 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 97/118 (82.20%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKM-RRHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAVVA QA+++ RR  EE RIKTAR REK+SDDIFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   LGAAIPAVVAGQAFRIKRRRDEEQRIKTARGREKSSDDIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV G+SELDA TDACARTVCVNQH VPN NDVCLRRCQSECLKLSAS SS
Sbjct: 69  DPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWNDVCLRRCQSECLKLSASRSS 126

[Close]

BLAST of Lsi05G009040 vs. TrEMBL
Match: A0A061DJX8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44
Identity = 92/118 (77.97%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKMR-RHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAV+A QA++M+ R +EE RIK+AR REK+SDDIFVCERVCTSKRMLKKVG+FSK
Sbjct: 48  LGAAIPAVIAGQAFRMKKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRMLKKVGAFSK 107

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPI DTCVTV G+SELDA +DACARTVCVNQH+VPN ND+CLRRCQSECL+LSASHSS
Sbjct: 108 DPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHSS 165

[Close]

BLAST of Lsi05G009040 vs. TrEMBL
Match: A0A061DJ25_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44
Identity = 92/118 (77.97%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKMR-RHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAV+A QA++M+ R +EE RIK+AR REK+SDDIFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   LGAAIPAVIAGQAFRMKKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPI DTCVTV G+SELDA +DACARTVCVNQH+VPN ND+CLRRCQSECL+LSASHSS
Sbjct: 69  DPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHSS 126

[Close]

BLAST of Lsi05G009040 vs. TAIR10
Match: AT5G64816.1 (AT5G64816.1 unknown protein)

HSP 1 Score: 181.8 bits (460), Expect = 3.0e-46
Identity = 89/118 (75.42%), Postives = 105/118 (88.98%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKMR-RHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           I   +PA++A QA++++ RH EE RIK+AR REK+SD+IFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   IGAAVPALIAGQAWRIKKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV G+SELDA +DACARTVCVNQH+V N ND+CLRRCQSECLKLS+S SS
Sbjct: 69  DPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKLSSSSSS 126

[Close]

BLAST of Lsi05G009040 vs. NCBI nr
Match: gi|449448416|ref|XP_004141962.1| (PREDICTED: uncharacterized protein At5g64816 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-49
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKM-RRHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAVVA Q YKM RRHSEE RIKTAR REKNSDDIFVCERVCTSKRMLKKVGSFSK
Sbjct: 9   LGAAIPAVVAGQVYKMKRRHSEEQRIKTARGREKNSDDIFVCERVCTSKRMLKKVGSFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV GLSELDA TDACARTVCVNQH+VPN NDVCLRRCQSECLKLSAS+SS
Sbjct: 69  DPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSASYSS 126

[Close]

BLAST of Lsi05G009040 vs. NCBI nr
Match: gi|659079210|ref|XP_008440134.1| (PREDICTED: uncharacterized protein At5g64816 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-47
Identity = 101/118 (85.59%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKM-RRHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAVVA Q Y+M RRHSEE RIK A  REKN DDIFVCERVCTSKRMLKKVGSFSK
Sbjct: 9   LGAAIPAVVAGQVYRMKRRHSEEQRIKIAWGREKNPDDIFVCERVCTSKRMLKKVGSFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV GLSELDA TDACARTVCVNQH+VPN NDVCLRRCQSECLKLSASHSS
Sbjct: 69  DPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSASHSS 126

[Close]

BLAST of Lsi05G009040 vs. NCBI nr
Match: gi|823194207|ref|XP_012492275.1| (PREDICTED: uncharacterized protein At5g64816 [Gossypium raimondii])

HSP 1 Score: 191.8 bits (486), Expect = 8.3e-46
Identity = 93/118 (78.81%), Postives = 108/118 (91.53%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKMRR-HSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAV+A QA++M++ H+EE RIK+AR REK+SDDIFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   LGAAIPAVIAGQAFRMKKKHAEEERIKSARGREKSSDDIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV G+SELDA +DACARTVCVNQH+VPN ND+CLRRCQSECL+LSASHSS
Sbjct: 69  DPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHSS 126

[Close]

BLAST of Lsi05G009040 vs. NCBI nr
Match: gi|731344273|ref|XP_010683322.1| (PREDICTED: uncharacterized protein At5g64816 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-45
Identity = 97/118 (82.20%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKM-RRHSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPAVVA QA+++ RR  EE RIKTAR REK+SDDIFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   LGAAIPAVVAGQAFRIKRRRDEEQRIKTARGREKSSDDIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV G+SELDA TDACARTVCVNQH VPN NDVCLRRCQSECLKLSAS SS
Sbjct: 69  DPIPDTCVTVCGVSELDACTDACARTVCVNQHHVPNWNDVCLRRCQSECLKLSASRSS 126

[Close]

BLAST of Lsi05G009040 vs. NCBI nr
Match: gi|697143982|ref|XP_009626114.1| (PREDICTED: uncharacterized protein At5g64816 [Nicotiana tomentosiformis])

HSP 1 Score: 189.9 bits (481), Expect = 3.1e-45
Identity = 94/118 (79.66%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 29  INPTIPAVVAEQAYKMRR-HSEEHRIKTAREREKNSDDIFVCERVCTSKRMLKKVGSFSK 88
           +   IPA+VA QAY++RR H+EE RIK+AR REK++DDIFVCERVCTSKRMLKKVG+FSK
Sbjct: 9   LGAAIPAIVAGQAYRIRRNHAEEQRIKSARGREKSTDDIFVCERVCTSKRMLKKVGAFSK 68

Query: 89  DPIPDTCVTVRGLSELDAYTDACARTVCVNQHKVPNCNDVCLRRCQSECLKLSASHSS 146
           DPIPDTCVTV G+SELDA +DACARTVCVNQH+VPN NDVCLRRCQSECLKLS+S SS
Sbjct: 69  DPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSSSFSS 126

The following BLAST results are available for this feature:

BLAST of Lsi05G009040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5486_ARATH	5.4e-45	75.42	Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1	[more]

BLAST of Lsi05G009040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ71_CUCSA	1.9e-49	88.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486990 PE=4 SV=1	[more]
A0A0D2SQP1_GOSRA	5.8e-46	78.81	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G245000 PE=4 SV=1	[more]
A0A0J8C4P0_BETVU	1.7e-45	82.20	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g155120 PE=4 S...	[more]
A0A061DJX8_THECC	2.4e-44	77.97	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1	[more]
A0A061DJ25_THECC	2.4e-44	77.97	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1	[more]

BLAST of Lsi05G009040 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64816.1	3.0e-46	75.42	unknown protein	[more]

BLAST of Lsi05G009040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448416\|ref\|XP_004141962.1\|	2.7e-49	88.14	PREDICTED: uncharacterized protein At5g64816 [Cucumis sativus]	[more]
gi\|659079210\|ref\|XP_008440134.1\|	2.0e-47	85.59	PREDICTED: uncharacterized protein At5g64816 [Cucumis melo]	[more]
gi\|823194207\|ref\|XP_012492275.1\|	8.3e-46	78.81	PREDICTED: uncharacterized protein At5g64816 [Gossypium raimondii]	[more]
gi\|731344273\|ref\|XP_010683322.1\|	2.4e-45	82.20	PREDICTED: uncharacterized protein At5g64816 [Beta vulgaris subsp. vulgaris]	[more]
gi\|697143982\|ref\|XP_009626114.1\|	3.1e-45	79.66	PREDICTED: uncharacterized protein At5g64816 [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009040.1	Lsi05G009040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35548	FAMILY NOT NAMED	coord: 33..145 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G009040	Bottle gourd (USVL1VR-Ls)	lsilsiB108
Lsi05G009040	Cucurbita maxima (Rimu)	cmalsiB491
Lsi05G009040	Cucurbita maxima (Rimu)	cmalsiB582
Lsi05G009040	Cucurbita moschata (Rifu)	cmolsiB474
Lsi05G009040	Cucurbita moschata (Rifu)	cmolsiB561
Lsi05G009040	Cucurbita pepo (Zucchini)	cpelsiB211
Lsi05G009040	Cucurbita pepo (Zucchini)	cpelsiB625
Lsi05G009040	Melon (DHL92) v3.5.1	lsimeB349
Lsi05G009040	Wild cucumber (PI 183967)	cpilsiB466
Lsi05G009040	Wild cucumber (PI 183967)	cpilsiB472
Lsi05G009040	Cucumber (Chinese Long) v2	culsiB459
Lsi05G009040	Cucumber (Chinese Long) v2	culsiB465
Lsi05G009040	Melon (DHL92) v3.5.1	lsimeB361
Lsi05G009040	Watermelon (Charleston Gray)	lsiwcgB312
Lsi05G009040	Watermelon (Charleston Gray)	lsiwcgB348
Lsi05G009040	Watermelon (97103) v1	lsiwmB345
Lsi05G009040	Watermelon (97103) v1	lsiwmB356
Lsi05G009040	Cucumber (Gy14) v2	cgyblsiB427
Lsi05G009040	Melon (DHL92) v3.6.1	lsimedB376
Lsi05G009040	Silver-seed gourd	carlsiB691
Lsi05G009040	Silver-seed gourd	carlsiB861
Lsi05G009040	Cucumber (Chinese Long) v3	cuclsiB488
Lsi05G009040	Watermelon (97103) v2	lsiwmbB346
Lsi05G009040	Watermelon (97103) v2	lsiwmbB351
Lsi05G009040	Wax gourd	lsiwgoB470
Lsi05G009040	Wax gourd	lsiwgoB459