Lsi05G008960 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G008960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionZinc finger family protein
Locationchr05 : 15713798 .. 15714640 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGCCACATGCGATCTCACTCGCCCAAGTTTTCCCTCCATCCCAATTCCAAACCAATGCCGACTCCGACCCCGACACCGAAACCGACGATAGACCATGATCGTCCTTCCTCGCCGTCTAACTCCTCCAATCTCCAATCTCCTCCTCCACACTCAAATTTCGTCTGTAGGGTTCGACAGTCGAAGGGGAAGCGTCGCCGAGACGAGCATTGGTATGATGAAGCGGAGACGACTTCGATCTTGTCCTCCTCGTCTCCTCCACATTCAAAACTCGTCGTTCAAGAGAAACGGTCTAGGGACGACAAAGCGGAGACGTCGATCTCGCCGACGTTGGATGCGGCATTGTGTCTTCTAATGATGAAAAGAGAGGGAAGAAAGAGAATGGAAGAAGAAAAAGAATCAAAAACCAAAGAAGATCAAAGTGAATTTGTGAGTGATTATGAAGAAGAATTTGAATATAAAGTTGAAGAAAAAGAAGAAGAAAAGGATGAAGATTCAGTGAGATTGAAATTCAAATGCAAAAAATGCAAGAAAGCATTTAGTTCATATCAAGCATTAGGAGGTCACAATGCAAGCCATAAAAGAATGGAGAATTATAATGGTGAAGTTCAACAAAAGGTTTTTAAATGTTCATTTTGCCCAAAAGTTTTTTATTCTGGCCAGGCACTTGGAGGCCACAAGAAAGTACATTTTTCAAACTTGAATAATAATAATTATTATTTTAACAATTCTCAACCTCATAGATTTGCCAAAACATCCGTAGATCTCAACCGTCCACCTCCTTATGGAGATTATGATCAAGATGAAGAAGATGAATTTTCTGAAATCTTCCATCCATGA

mRNA sequence

ATGGGCGGCCACATGCGATCTCACTCGCCCAAGTTTTCCCTCCATCCCAATTCCAAACCAATGCCGACTCCGACCCCGACACCGAAACCGACGATAGACCATGATCGTCCTTCCTCGCCGTCTAACTCCTCCAATCTCCAATCTCCTCCTCCACACTCAAATTTCGTCTGTAGGGTTCGACAGTCGAAGGGGAAGCGTCGCCGAGACGAGCATTGGTATGATGAAGCGGAGACGACTTCGATCTTGTCCTCCTCGTCTCCTCCACATTCAAAACTCGTCGTTCAAGAGAAACGGTCTAGGGACGACAAAGCGGAGACGTCGATCTCGCCGACGTTGGATGCGGCATTGTGTCTTCTAATGATGAAAAGAGAGGGAAGAAAGAGAATGGAAGAAGAAAAAGAATCAAAAACCAAAGAAGATCAAAGTGAATTTGTGAGTGATTATGAAGAAGAATTTGAATATAAAGTTGAAGAAAAAGAAGAAGAAAAGGATGAAGATTCAGTGAGATTGAAATTCAAATGCAAAAAATGCAAGAAAGCATTTAGTTCATATCAAGCATTAGGAGGTCACAATGCAAGCCATAAAAGAATGGAGAATTATAATGGTGAAGTTCAACAAAAGGTTTTTAAATGTTCATTTTGCCCAAAAGTTTTTTATTCTGGCCAGGCACTTGGAGGCCACAAGAAAGTACATTTTTCAAACTTGAATAATAATAATTATTATTTTAACAATTCTCAACCTCATAGATTTGCCAAAACATCCGTAGATCTCAACCGTCCACCTCCTTATGGAGATTATGATCAAGATGAAGAAGATGAATTTTCTGAAATCTTCCATCCATGA

Coding sequence (CDS)

ATGGGCGGCCACATGCGATCTCACTCGCCCAAGTTTTCCCTCCATCCCAATTCCAAACCAATGCCGACTCCGACCCCGACACCGAAACCGACGATAGACCATGATCGTCCTTCCTCGCCGTCTAACTCCTCCAATCTCCAATCTCCTCCTCCACACTCAAATTTCGTCTGTAGGGTTCGACAGTCGAAGGGGAAGCGTCGCCGAGACGAGCATTGGTATGATGAAGCGGAGACGACTTCGATCTTGTCCTCCTCGTCTCCTCCACATTCAAAACTCGTCGTTCAAGAGAAACGGTCTAGGGACGACAAAGCGGAGACGTCGATCTCGCCGACGTTGGATGCGGCATTGTGTCTTCTAATGATGAAAAGAGAGGGAAGAAAGAGAATGGAAGAAGAAAAAGAATCAAAAACCAAAGAAGATCAAAGTGAATTTGTGAGTGATTATGAAGAAGAATTTGAATATAAAGTTGAAGAAAAAGAAGAAGAAAAGGATGAAGATTCAGTGAGATTGAAATTCAAATGCAAAAAATGCAAGAAAGCATTTAGTTCATATCAAGCATTAGGAGGTCACAATGCAAGCCATAAAAGAATGGAGAATTATAATGGTGAAGTTCAACAAAAGGTTTTTAAATGTTCATTTTGCCCAAAAGTTTTTTATTCTGGCCAGGCACTTGGAGGCCACAAGAAAGTACATTTTTCAAACTTGAATAATAATAATTATTATTTTAACAATTCTCAACCTCATAGATTTGCCAAAACATCCGTAGATCTCAACCGTCCACCTCCTTATGGAGATTATGATCAAGATGAAGAAGATGAATTTTCTGAAATCTTCCATCCATGA

Protein sequence

MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRVRQSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLKFKCKKCKKAFSSYQALGGHNASHKRMENYNGEVQQKVFKCSFCPKVFYSGQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLNRPPPYGDYDQDEEDEFSEIFHP
Homology
[Close]
BLAST of Lsi05G008960 vs. Swiss-Prot
Match: ZAT4_ARATH (Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.2e-14
Identity = 74/236 (31.36%), Postives = 116/236 (49.15%), Query Frame = 1 

Query: 60  RQSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLL 119
           R+SK  R+     +D  +    L++S P     +V E       ++T+     D A CL+
Sbjct: 106 RRSKRTRKLGSFDFDFEK----LTTSQPSE---LVAEPEHHSSASDTTTEE--DLAFCLI 165

Query: 120 MMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLKFKCKKCKK 179
           M+ R+  K+ +++K+ + +ED+++  S+     +YK  +          R +FKC+ C K
Sbjct: 166 MLSRDKWKQQKKKKQ-RVEEDETDHDSE-----DYKSSKS---------RGRFKCETCGK 225

Query: 180 AFSSYQALGGHNASHKR------------MENYNGEVQQKVFKCSFCPKVFYSGQALGGH 239
            F SYQALGGH ASHK+             E   G  ++KV +C  C +VF SGQALGGH
Sbjct: 226 VFKSYQALGGHRASHKKNKACMTKTEQVETEYVLGVKEKKVHECPICFRVFTSGQALGGH 285

Query: 240 KKVHFSNLN-----NNNYYFNNSQPHRFAKTSVDLNRPPPYGDYDQDEEDEFSEIF 279
           K+ H SN+      + +      +     +  +DLN P P      +EEDE S +F
Sbjct: 286 KRSHGSNIGAGRGLSVSQIVQIEEEVSVKQRMIDLNLPAP------NEEDETSLVF 311

[Close]
BLAST of Lsi05G008960 vs. Swiss-Prot
Match: ZAT9_ARATH (Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-11
Identity = 91/305 (29.84%), Postives = 130/305 (42.62%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRV- 60
           +GGHMRSH    S     +P      T       D   + ++S  L+     S     V 
Sbjct: 19  LGGHMRSHMSN-SHEEEQRPSQLSYETESDVSSSDPKFAFTSSVLLEDGESESESSRNVI 78

Query: 61  ----RQSKGKRRRDEHWYDEAETTSI----LSSSSPPHSKLVVQEKRSRDDKAETSISPT 120
               ++SK  R+ D     + +T+ +     S   PPHS        + D   E      
Sbjct: 79  NLTRKRSKRTRKLDSFVTKKVKTSQLGYKPESDQEPPHSS-------ASDTTTEE----- 138

Query: 121 LDAALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLK 180
            D A CL+M+ R+  K+ +  KE          V + E E E    E   + +  + + +
Sbjct: 139 -DLAFCLMMLSRDKWKKNKSNKE---------VVEEIETEEE---SEGYNKINRATTKGR 198

Query: 181 FKCKKCKKAFSSYQALGGHNASHKRMENYNGEVQQ--------------KVFKCSFCPKV 240
           +KC+ C K F SYQALGGH ASHK+    N + +Q              ++ +C  C +V
Sbjct: 199 YKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQRSETEYDNVVVVAKRIHECPICLRV 258

Query: 241 FYSGQALGGHKKVH-FSNLNNN---NYYFNNSQPHRFAKTSVDLNRPPPYGDYDQDEEDE 279
           F SGQALGGHK+ H   NL+ N     + N S   R     +DLN P P       EEDE
Sbjct: 259 FASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQRM----IDLNLPAP------TEEDE 287

[Close]
BLAST of Lsi05G008960 vs. Swiss-Prot
Match: AZF2_ARATH (Zinc finger protein AZF2 OS=Arabidopsis thaliana GN=AZF2 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 58/192 (30.21%), Postives = 82/192 (42.71%), Query Frame = 1 

Query: 65  KRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLLMMKRE 124
           KR+R +     + ++S   SSSPP S+     K    D  E         ALCLLM+ ++
Sbjct: 34  KRKRSKRQRSHSPSSS---SSSPPRSR----PKSQNQDLTEEEY-----LALCLLMLAKD 93

Query: 125 --GRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLKFKCKKCKKAFS 184
              + R  ++ +S T   +S+                          L +KC  C+KAF 
Sbjct: 94  QPSQTRFHQQSQSLTPPPESK-------------------------NLPYKCNVCEKAFP 153

Query: 185 SYQALGGHNASHK----------------------RMENYNGEVQQKVFKCSFCPKVFYS 233
           SYQALGGH ASH+                        E +      K+ +CS C KVF +
Sbjct: 154 SYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPT 188

[Close]
BLAST of Lsi05G008960 vs. Swiss-Prot
Match: AZF3_ARATH (Zinc finger protein AZF3 OS=Arabidopsis thaliana GN=AZF3 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 45/118 (38.14%), Postives = 58/118 (49.15%), Query Frame = 1 

Query: 164 DEDSVRL----KFKCKKCKKAFSSYQALGGHNASHKRM------ENYNGEVQQKVFKCSF 223
           D DSV +     +KC  C K FSSYQALGGH ASH+ +      +        K   CS 
Sbjct: 63  DLDSVTVAEKPSYKCGVCYKTFSSYQALGGHKASHRSLYGGGENDKSTPSTAVKSHVCSV 122

Query: 224 CPKVFYSGQALGGHKKVHF-SNLNNNNYYFNNSQPHRFAKTSVDLNRPPPYGDYDQDE 271
           C K F +GQALGGHK+ H+   ++N+    + S     +    DLN  P  G    DE
Sbjct: 123 CGKSFATGQALGGHKRCHYDGGVSNSEGVGSTSHVSSSSHRGFDLNIIPVQGFSPDDE 180

[Close]
BLAST of Lsi05G008960 vs. Swiss-Prot
Match: ZAT11_ARATH (Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-09
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1 

Query: 171 KFKCKKCKKAFSSYQALGGHNASHKR---------MENYNGEVQQKVF-KCSFCPKVFYS 230
           +F+CK C K FSS+QALGGH ASHK+         +++ + + +   F KCS C + F +
Sbjct: 46  QFECKTCNKRFSSFQALGGHRASHKKPKLTVEQKDVKHLSNDYKGNHFHKCSICSQSFGT 105

Query: 231 GQALGGHKKVHFSNL 236
           GQALGGH + H S++
Sbjct: 106 GQALGGHMRRHRSSM 120

[Close]
BLAST of Lsi05G008960 vs. TrEMBL
Match: A0A067JI04_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26269 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.3e-21
Identity = 110/330 (33.33%), Postives = 153/330 (46.36%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHP---NSKPMPTP-TPTPKPTIDHDRPSSPSN------SSNLQSP- 60
           MGGHMRSH  K  L P   +S+  P+P +P+P  +   + P +  N      S N + P 
Sbjct: 20  MGGHMRSHLAKLPLPPKPISSQLYPSPKSPSPSSSSSFNYPLTDQNPMQSYRSVNHELPF 79

Query: 61  --------PPHSNFVCRVRQSKGKRRRDEHWYDEAETT--SILSSSSPPHSKLVVQEKRS 120
                      S      R +   RRR +     AE    S+L S+  P     +     
Sbjct: 80  MSKANLANDGESETESSPRNNNPTRRRSKRRRKSAEKVAESVLKSAESPEQVSSISSDFF 139

Query: 121 RDDKAETSISPTLDAALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEK 180
            ++          D A+CLLM+ R+ R  +++        D S  + +Y +E E   E++
Sbjct: 140 NEE----------DVAMCLLMLSRDKRTIVKQ-----VAYDHSYTIQEYRDEIED--EDE 199

Query: 181 EEEKDEDSVRL----------KFKCKKCKKAFSSYQALGGHNASHKRMENYNGEV----- 240
             E D++S  L          K+KC+ CKK F SYQALGGH ASHK+M+ ++  V     
Sbjct: 200 TFEDDDESFGLIHVGSNKSQGKYKCQTCKKRFRSYQALGGHKASHKKMKTHDLYVEGSGS 259

Query: 241 -----------QQKVFKCSFCPKVFYSGQALGGHKKVHFSNLNNNNYYFNNSQPH---RF 280
                      Q ++FKC FC KVF SGQALGGHKKVHFS L NN    NNS      +F
Sbjct: 260 GSRSGAVMAIDQPRIFKCPFCDKVFDSGQALGGHKKVHFSYLGNNCNSNNNSDTKISVKF 319

[Close]
BLAST of Lsi05G008960 vs. TrEMBL
Match: A0A067E3Y0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038614mg PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 105/286 (36.71%), Postives = 149/286 (52.10%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRVR 60
           MGGHMRSH   F+ HP S     P+P PK       PSS S+ SN+Q+    +N     R
Sbjct: 1   MGGHMRSH---FAKHPISSSNINPSP-PK------YPSSSSSLSNMQTYRSVNN-----R 60

Query: 61  QSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLLM 120
              G    DE    EAE++  L+ +    SK  ++   S  +    +     + A+CLL 
Sbjct: 61  PFSGLE--DE---SEAESSRNLTKA---RSKRPLRTIESVSNSVTENFLSDREVAMCLLK 120

Query: 121 MKREGRKRMEEEKESKTKE---DQSEFVSDYEEEFEYKVEEKEEEKDEDSVRL-----KF 180
           + R+    ++++K+    E   D+ E+V    ++ +    ++EE+K+ED   L     K+
Sbjct: 121 LSRDNW--LQKDKQVVVAEAVVDEDEYVRGKSDDGD---NDEEEDKEEDESSLVSRTNKY 180

Query: 181 KCKKCKKAFSSYQALGGHNASHKRME-NYNGE------------VQQKVFKCSFCPKVFY 240
           KCK CKK F SYQALGGH ASHK+++ ++NG             + Q+VFKC FC KVF 
Sbjct: 181 KCKTCKKEFRSYQALGGHKASHKKIKIHHNGSSDAAAAGGDAVVMDQRVFKCPFCDKVFD 240

Query: 241 SGQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLNRPPPYGD 266
           SGQALGGHKK+HF+ L        +S     AK  +DLN P P  D
Sbjct: 241 SGQALGGHKKIHFTYLATPITKITSSAKSSGAK-FIDLNLPAPEDD 257

[Close]
BLAST of Lsi05G008960 vs. TrEMBL
Match: V4RL22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007101mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.1e-19
Identity = 104/285 (36.49%), Postives = 149/285 (52.28%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRVR 60
           MGGHMRSH   F+ HP S     P+P PK       PSS S+ SN+Q+    +N     R
Sbjct: 20  MGGHMRSH---FAKHPISSSNINPSP-PK------YPSSSSSLSNMQTYRSVNN-----R 79

Query: 61  QSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLLM 120
              G    DE    EAE++  L+ +    SK  ++   S  +    +     + A+CLL 
Sbjct: 80  PFSGLE--DE---SEAESSRNLTKA---RSKRPLRTIESVSNSVTENFLSDREVAMCLLK 139

Query: 121 MKREGRKRMEEEKESKTKE---DQSEFVSDYEEEFEYKVEEKEEEKDEDSVRL-----KF 180
           + ++    ++++K+    E   D+ E+V    ++ +    ++EE+K+ED   L     K+
Sbjct: 140 LSKDNW--LQKDKQVVVAEAVVDEDEYVRGKSDDGD---NDEEEDKEEDESSLVSRTNKY 199

Query: 181 KCKKCKKAFSSYQALGGHNASHKRME-NYNGE-----------VQQKVFKCSFCPKVFYS 240
           KCK CKK F SYQALGGH ASHK+++ ++NG            + Q+VFKC FC KVF S
Sbjct: 200 KCKTCKKEFRSYQALGGHKASHKKIKIHHNGSSDAAAAGDAVVMDQRVFKCPFCDKVFDS 259

Query: 241 GQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLNRPPPYGD 266
           GQALGGHKK+HF+ L        +S     AK  +DLN P P  D
Sbjct: 260 GQALGGHKKIHFTYLATPITKITSSAKSSGAK-FIDLNLPAPEDD 275

[Close]
BLAST of Lsi05G008960 vs. TrEMBL
Match: A0A058ZY51_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K00165 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.3e-17
Identity = 88/267 (32.96%), Postives = 123/267 (46.07%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPP-HSNFVCRV 60
           MGGHMRSH  K    P   P+P PTPTP P+          +    Q+P   H       
Sbjct: 20  MGGHMRSHFAKL---PPRLPLPQPTPTPTPSSSLSLSPQRLHQGKPQTPAAVHDRGSDTE 79

Query: 61  RQSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLL 120
              + KR R + W       ++L++            +++    +ET      D ALCL+
Sbjct: 80  SSRRRKRNRSKRWGRAVGADALLNADV----------EQAISSVSETETLSEADGALCLM 139

Query: 121 MMKR-EGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLKFKCKKCK 180
           M+ R +  KR   E +   ++D  + VS             +      S R K++C+ C 
Sbjct: 140 MLSRGKWPKRSSAETDGHEEDDGDDSVS-----------VTQMNGRAGSSRPKYRCETCN 199

Query: 181 KAFSSYQALGGHNASHKRM--ENYNGEVQQKV-FKCSFCPKVFYSGQALGGHKKVHFSNL 240
           K F SYQALGGH ASHK+   EN  G   +++ F+C +C KVF SGQALGGHKKVH    
Sbjct: 200 KGFGSYQALGGHRASHKKTSEENLIGHNHKRLAFECPYCHKVFDSGQALGGHKKVH---- 258

Query: 241 NNNNYYFNNSQPHRFAKTSVDLNRPPP 263
           N        S+     ++ +DLN P P
Sbjct: 260 NEAITVTAKSKNCDAGESLIDLNLPAP 258

[Close]
BLAST of Lsi05G008960 vs. TrEMBL
Match: B9R9U7_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1500710 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.1e-16
Identity = 103/303 (33.99%), Postives = 138/303 (45.54%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPS-------SPSNSSNLQSPPPHS 60
           MGGHMRSH  K        P+P     PKP I    PS       SPS+SS+L     + 
Sbjct: 20  MGGHMRSHLAKL-------PLP-----PKPIIKVQYPSPIKSLSPSPSSSSSL-----NY 79

Query: 61  NFVCRVRQSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLD 120
           +F     QS          Y          SS+P  +        S DD    + SP  +
Sbjct: 80  SFTKNPIQS----------YRSINHELPFMSSNPAAA--------SNDDGESETDSPKNN 139

Query: 121 AALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRL--- 180
                   +R  R+R   EK    K+     V +Y EE E + EE+E+++  D++ +   
Sbjct: 140 PT-----RRRSKRRRKSIEKRIPIKQ-----VYEYMEEVESENEEEEDDESFDAIPMRSK 199

Query: 181 -KFKCKKCKKAFSSYQALGGHNASHKRMENY--------NGE-----------VQQKVFK 240
            K+KCK CKK F SYQALGGH ASHK+++ +        +G            V  K+FK
Sbjct: 200 GKYKCKTCKKEFRSYQALGGHKASHKKIKTHVKVEHEEGSGSGSGVGGNCVTVVDHKMFK 259

Query: 241 CSFCPKVFYSGQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLNRPPPYGDYDQDE 274
           C FC K+F SGQALGGHKKVHFS L N      +S         +DLN P P  D +  +
Sbjct: 260 CPFCDKMFDSGQALGGHKKVHFSYLGNAKMSAKSSH------DLLDLNLPAPEDDGEVSQ 271

[Close]
BLAST of Lsi05G008960 vs. TAIR10
Match: AT2G45120.1 (AT2G45120.1 C2H2-like zinc finger protein)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-15
Identity = 74/236 (31.36%), Postives = 116/236 (49.15%), Query Frame = 1 

Query: 60  RQSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLL 119
           R+SK  R+     +D  +    L++S P     +V E       ++T+     D A CL+
Sbjct: 106 RRSKRTRKLGSFDFDFEK----LTTSQPSE---LVAEPEHHSSASDTTTEE--DLAFCLI 165

Query: 120 MMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLKFKCKKCKK 179
           M+ R+  K+ +++K+ + +ED+++  S+     +YK  +          R +FKC+ C K
Sbjct: 166 MLSRDKWKQQKKKKQ-RVEEDETDHDSE-----DYKSSKS---------RGRFKCETCGK 225

Query: 180 AFSSYQALGGHNASHKR------------MENYNGEVQQKVFKCSFCPKVFYSGQALGGH 239
            F SYQALGGH ASHK+             E   G  ++KV +C  C +VF SGQALGGH
Sbjct: 226 VFKSYQALGGHRASHKKNKACMTKTEQVETEYVLGVKEKKVHECPICFRVFTSGQALGGH 285

Query: 240 KKVHFSNLN-----NNNYYFNNSQPHRFAKTSVDLNRPPPYGDYDQDEEDEFSEIF 279
           K+ H SN+      + +      +     +  +DLN P P      +EEDE S +F
Sbjct: 286 KRSHGSNIGAGRGLSVSQIVQIEEEVSVKQRMIDLNLPAP------NEEDETSLVF 311

[Close]
BLAST of Lsi05G008960 vs. TAIR10
Match: AT3G60580.1 (AT3G60580.1 C2H2-like zinc finger protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-12
Identity = 91/305 (29.84%), Postives = 130/305 (42.62%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRV- 60
           +GGHMRSH    S     +P      T       D   + ++S  L+     S     V 
Sbjct: 19  LGGHMRSHMSN-SHEEEQRPSQLSYETESDVSSSDPKFAFTSSVLLEDGESESESSRNVI 78

Query: 61  ----RQSKGKRRRDEHWYDEAETTSI----LSSSSPPHSKLVVQEKRSRDDKAETSISPT 120
               ++SK  R+ D     + +T+ +     S   PPHS        + D   E      
Sbjct: 79  NLTRKRSKRTRKLDSFVTKKVKTSQLGYKPESDQEPPHSS-------ASDTTTEE----- 138

Query: 121 LDAALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLK 180
            D A CL+M+ R+  K+ +  KE          V + E E E    E   + +  + + +
Sbjct: 139 -DLAFCLMMLSRDKWKKNKSNKE---------VVEEIETEEE---SEGYNKINRATTKGR 198

Query: 181 FKCKKCKKAFSSYQALGGHNASHKRMENYNGEVQQ--------------KVFKCSFCPKV 240
           +KC+ C K F SYQALGGH ASHK+    N + +Q              ++ +C  C +V
Sbjct: 199 YKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQRSETEYDNVVVVAKRIHECPICLRV 258

Query: 241 FYSGQALGGHKKVH-FSNLNNN---NYYFNNSQPHRFAKTSVDLNRPPPYGDYDQDEEDE 279
           F SGQALGGHK+ H   NL+ N     + N S   R     +DLN P P       EEDE
Sbjct: 259 FASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQRM----IDLNLPAP------TEEDE 287

[Close]
BLAST of Lsi05G008960 vs. TAIR10
Match: AT3G49930.1 (AT3G49930.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-11
Identity = 59/182 (32.42%), Postives = 72/182 (39.56%), Query Frame = 1 

Query: 97  KRSRDDKAETSISPTLDAALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKV 156
           KR R D+     S     ALCLLM+ R          +  +    S+   DY        
Sbjct: 43  KRHRIDQPNPPPSEEEYLALCLLMLARGSSDHHSPPSDHHSLSPLSDHQKDY-------- 102

Query: 157 EEKEEEKDEDSVRLKFKCKKCKKAFSSYQALGGHNASHKR-----MENYNGEVQQ----- 216
                           KC  C K+F SYQALGGH  SH++     + N NG V       
Sbjct: 103 ----------------KCSVCGKSFPSYQALGGHKTSHRKPVSVDVNNSNGTVTNNGNIS 162

Query: 217 --------KVFKCSFCPKVFYSGQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLN 261
                   K   CS C K F SGQALGGHK+ H+   N N+   N    H+F     DLN
Sbjct: 163 NGLVGQSGKTHNCSICFKSFPSGQALGGHKRCHYDGGNGNS---NGDNSHKF-----DLN 192

[Close]
BLAST of Lsi05G008960 vs. TAIR10
Match: AT1G49900.1 (AT1G49900.1 C2H2 type zinc finger transcription factor family)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-11
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 1 

Query: 172 FKCKKCKKAFSSYQALGGHNASHK----RMENYNGEVQQ-----------KVFKCSFCPK 231
           FKC  C+K F+SYQALGGH ASH     ++EN   +  +           K+ KC  C  
Sbjct: 193 FKCSICEKVFTSYQALGGHKASHSIKAAQLENAGADAGEKTRSKMLSPSGKIHKCDICHV 252

Query: 232 VFYSGQALGGHKKVHFSNL 236
           +F +GQALGGHK+ H+  L
Sbjct: 253 LFPTGQALGGHKRRHYEGL 271

[Close]
BLAST of Lsi05G008960 vs. TAIR10
Match: AT3G19580.1 (AT3G19580.1 zinc-finger protein 2)

HSP 1 Score: 65.5 bits (158), Expect = 6.1e-11
Identity = 58/192 (30.21%), Postives = 82/192 (42.71%), Query Frame = 1 

Query: 65  KRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLLMMKRE 124
           KR+R +     + ++S   SSSPP S+     K    D  E         ALCLLM+ ++
Sbjct: 34  KRKRSKRQRSHSPSSS---SSSPPRSR----PKSQNQDLTEEEY-----LALCLLMLAKD 93

Query: 125 --GRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEKEEEKDEDSVRLKFKCKKCKKAFS 184
              + R  ++ +S T   +S+                          L +KC  C+KAF 
Sbjct: 94  QPSQTRFHQQSQSLTPPPESK-------------------------NLPYKCNVCEKAFP 153

Query: 185 SYQALGGHNASHK----------------------RMENYNGEVQQKVFKCSFCPKVFYS 233
           SYQALGGH ASH+                        E +      K+ +CS C KVF +
Sbjct: 154 SYQALGGHKASHRIKPPTVISTTADDSTAPTISIVAGEKHPIAASGKIHECSICHKVFPT 188

[Close]
BLAST of Lsi05G008960 vs. NCBI nr
Match: gi|643706306|gb|KDP22438.1| (hypothetical protein JCGZ_26269 [Jatropha curcas])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 110/330 (33.33%), Postives = 153/330 (46.36%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHP---NSKPMPTP-TPTPKPTIDHDRPSSPSN------SSNLQSP- 60
           MGGHMRSH  K  L P   +S+  P+P +P+P  +   + P +  N      S N + P 
Sbjct: 20  MGGHMRSHLAKLPLPPKPISSQLYPSPKSPSPSSSSSFNYPLTDQNPMQSYRSVNHELPF 79

Query: 61  --------PPHSNFVCRVRQSKGKRRRDEHWYDEAETT--SILSSSSPPHSKLVVQEKRS 120
                      S      R +   RRR +     AE    S+L S+  P     +     
Sbjct: 80  MSKANLANDGESETESSPRNNNPTRRRSKRRRKSAEKVAESVLKSAESPEQVSSISSDFF 139

Query: 121 RDDKAETSISPTLDAALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEK 180
            ++          D A+CLLM+ R+ R  +++        D S  + +Y +E E   E++
Sbjct: 140 NEE----------DVAMCLLMLSRDKRTIVKQ-----VAYDHSYTIQEYRDEIED--EDE 199

Query: 181 EEEKDEDSVRL----------KFKCKKCKKAFSSYQALGGHNASHKRMENYNGEV----- 240
             E D++S  L          K+KC+ CKK F SYQALGGH ASHK+M+ ++  V     
Sbjct: 200 TFEDDDESFGLIHVGSNKSQGKYKCQTCKKRFRSYQALGGHKASHKKMKTHDLYVEGSGS 259

Query: 241 -----------QQKVFKCSFCPKVFYSGQALGGHKKVHFSNLNNNNYYFNNSQPH---RF 280
                      Q ++FKC FC KVF SGQALGGHKKVHFS L NN    NNS      +F
Sbjct: 260 GSRSGAVMAIDQPRIFKCPFCDKVFDSGQALGGHKKVHFSYLGNNCNSNNNSDTKISVKF 319

[Close]
BLAST of Lsi05G008960 vs. NCBI nr
Match: gi|743808754|ref|XP_011018344.1| (PREDICTED: zinc finger protein ZAT9-like [Populus euphratica])

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 106/313 (33.87%), Postives = 148/313 (47.28%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSN-----LQSPPPHSNF 60
           MGGHMRSH  K  L P  KP+P     P+ T +  + S PS+SS         P   S  
Sbjct: 20  MGGHMRSHLAKLPLPP--KPIP-----PQETYNTPKKSPPSSSSLNYPLLCNKPTQSSRS 79

Query: 61  VCRVRQSKGKRRRDEHWYD-EAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTL-- 120
           + +   S   R      YD E+ET     S+  P  +   + ++S D+ AE+ +  T   
Sbjct: 80  MKQEVSSTVSRPNLATSYDGESET----ESTRKPTRRRSKRSRKSADEVAESMVKVTESS 139

Query: 121 -------------DAALCLLMMKREGRKRMEEEKESKTKEDQSEFVSDYEEEFEYKVEEK 180
                        D ALCLLM+ R+       E   + K++  E + D++   E +  EK
Sbjct: 140 EQVSSISYLLAEEDVALCLLMLSRDNWS----EDAKQVKKEVCEDIKDHQHVNEVENYEK 199

Query: 181 EE-----EKDEDSVRLKFKCKKCKKAFSSYQALGGHNASHKRMENY-------------- 240
           E+      + +   + KFKC+ CKK F SYQALGGH A+HK+++ +              
Sbjct: 200 EDYLFGVTRAKYKSQGKFKCETCKKGFQSYQALGGHRANHKKIKIHEEHEEGNVIGCGED 259

Query: 241 NGEVQQKVFKCSFCPKVFYSGQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLNRP 274
           N  V +++FKC FC KVF SGQALGGHKKVHFS L   N         +     +DLN+P
Sbjct: 260 NRSVGKRIFKCPFCDKVFDSGQALGGHKKVHFSYLPVTN--------AKIPINLLDLNKP 309

[Close]
BLAST of Lsi05G008960 vs. NCBI nr
Match: gi|641830848|gb|KDO49924.1| (hypothetical protein CISIN_1g038614mg [Citrus sinensis])

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-19
Identity = 105/286 (36.71%), Postives = 149/286 (52.10%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRVR 60
           MGGHMRSH   F+ HP S     P+P PK       PSS S+ SN+Q+    +N     R
Sbjct: 1   MGGHMRSH---FAKHPISSSNINPSP-PK------YPSSSSSLSNMQTYRSVNN-----R 60

Query: 61  QSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLLM 120
              G    DE    EAE++  L+ +    SK  ++   S  +    +     + A+CLL 
Sbjct: 61  PFSGLE--DE---SEAESSRNLTKA---RSKRPLRTIESVSNSVTENFLSDREVAMCLLK 120

Query: 121 MKREGRKRMEEEKESKTKE---DQSEFVSDYEEEFEYKVEEKEEEKDEDSVRL-----KF 180
           + R+    ++++K+    E   D+ E+V    ++ +    ++EE+K+ED   L     K+
Sbjct: 121 LSRDNW--LQKDKQVVVAEAVVDEDEYVRGKSDDGD---NDEEEDKEEDESSLVSRTNKY 180

Query: 181 KCKKCKKAFSSYQALGGHNASHKRME-NYNGE------------VQQKVFKCSFCPKVFY 240
           KCK CKK F SYQALGGH ASHK+++ ++NG             + Q+VFKC FC KVF 
Sbjct: 181 KCKTCKKEFRSYQALGGHKASHKKIKIHHNGSSDAAAAGGDAVVMDQRVFKCPFCDKVFD 240

Query: 241 SGQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLNRPPPYGD 266
           SGQALGGHKK+HF+ L        +S     AK  +DLN P P  D
Sbjct: 241 SGQALGGHKKIHFTYLATPITKITSSAKSSGAK-FIDLNLPAPEDD 257

[Close]
BLAST of Lsi05G008960 vs. NCBI nr
Match: gi|567857900|ref|XP_006421633.1| (hypothetical protein CICLE_v10007101mg [Citrus clementina])

HSP 1 Score: 104.0 bits (258), Expect = 4.4e-19
Identity = 104/285 (36.49%), Postives = 149/285 (52.28%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPTPTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRVR 60
           MGGHMRSH   F+ HP S     P+P PK       PSS S+ SN+Q+    +N     R
Sbjct: 20  MGGHMRSH---FAKHPISSSNINPSP-PK------YPSSSSSLSNMQTYRSVNN-----R 79

Query: 61  QSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLLM 120
              G    DE    EAE++  L+ +    SK  ++   S  +    +     + A+CLL 
Sbjct: 80  PFSGLE--DE---SEAESSRNLTKA---RSKRPLRTIESVSNSVTENFLSDREVAMCLLK 139

Query: 121 MKREGRKRMEEEKESKTKE---DQSEFVSDYEEEFEYKVEEKEEEKDEDSVRL-----KF 180
           + ++    ++++K+    E   D+ E+V    ++ +    ++EE+K+ED   L     K+
Sbjct: 140 LSKDNW--LQKDKQVVVAEAVVDEDEYVRGKSDDGD---NDEEEDKEEDESSLVSRTNKY 199

Query: 181 KCKKCKKAFSSYQALGGHNASHKRME-NYNGE-----------VQQKVFKCSFCPKVFYS 240
           KCK CKK F SYQALGGH ASHK+++ ++NG            + Q+VFKC FC KVF S
Sbjct: 200 KCKTCKKEFRSYQALGGHKASHKKIKIHHNGSSDAAAAGDAVVMDQRVFKCPFCDKVFDS 259

Query: 241 GQALGGHKKVHFSNLNNNNYYFNNSQPHRFAKTSVDLNRPPPYGD 266
           GQALGGHKK+HF+ L        +S     AK  +DLN P P  D
Sbjct: 260 GQALGGHKKIHFTYLATPITKITSSAKSSGAK-FIDLNLPAPEDD 275

[Close]
BLAST of Lsi05G008960 vs. NCBI nr
Match: gi|802769814|ref|XP_012090460.1| (PREDICTED: zinc finger protein ZAT9 [Jatropha curcas])

HSP 1 Score: 97.8 bits (242), Expect = 3.1e-17
Identity = 105/311 (33.76%), Postives = 145/311 (46.62%), Query Frame = 1 

Query: 1   MGGHMRSHSPKFSLHPNSKPMPTPT-PTPKPTIDHDRPSSPSNSSNLQSPPPHSNFVCRV 60
           MGGHMRSH  K  L P  KP+ +   P+PK         SPS+SS+   P    N +   
Sbjct: 20  MGGHMRSHLAKLPLPP--KPISSQLYPSPKSP-------SPSSSSSFNYPLTDQNPMQSY 79

Query: 61  RQSKGKRRRDEHWYDEAETTSILSSSSPPHSKLVVQEKRSRDDKAETSISPTLDAALCLL 120
           R                     ++   P  SK  +    + D ++ET  SP  +      
Sbjct: 80  RS--------------------VNHELPFMSKANL----ANDGESETESSPRNN------ 139

Query: 121 MMKREGRKRMEEEKESKTKEDQSEF-VSDYEEEFEYKVEEKEEEKDEDSVRL-------- 180
                 R+R +  ++S  K  +S + + +Y +E E   E++  E D++S  L        
Sbjct: 140 ---NPTRRRSKRRRKSAEKVAESVYTIQEYRDEIED--EDETFEDDDESFGLIHVGSNKS 199

Query: 181 --KFKCKKCKKAFSSYQALGGHNASHKRMENYNGEV----------------QQKVFKCS 240
             K+KC+ CKK F SYQALGGH ASHK+M+ ++  V                Q ++FKC 
Sbjct: 200 QGKYKCQTCKKRFRSYQALGGHKASHKKMKTHDLYVEGSGSGSRSGAVMAIDQPRIFKCP 259

Query: 241 FCPKVFYSGQALGGHKKVHFSNLNNNNYYFNNSQPH---RFAKTSVDLNRPPPYGDYDQD 280
           FC KVF SGQALGGHKKVHFS L NN    NNS      +F    +DLN P P  D +  
Sbjct: 260 FCDKVFDSGQALGGHKKVHFSYLGNNCNSNNNSDTKISVKFTDDLLDLNLPAPEDDGEVS 286

The following BLAST results are available for this feature:
BLAST of Lsi05G008960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ZAT4_ARATH7.2e-1431.36Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1[more]
ZAT9_ARATH2.6e-1129.84Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1[more]
AZF2_ARATH1.1e-0930.21Zinc finger protein AZF2 OS=Arabidopsis thaliana GN=AZF2 PE=2 SV=1[more]
AZF3_ARATH1.8e-0938.14Zinc finger protein AZF3 OS=Arabidopsis thaliana GN=AZF3 PE=1 SV=1[more]
ZAT11_ARATH4.1e-0944.00Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1[more]
BLAST of Lsi05G008960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JI04_JATCU7.3e-2133.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26269 PE=4 SV=1[more]
A0A067E3Y0_CITSI1.8e-1936.71Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038614mg PE=4 SV=1[more]
V4RL22_9ROSI3.1e-1936.49Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007101mg PE=4 SV=1[more]
A0A058ZY51_EUCGR8.3e-1732.96Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K00165 PE=4 ... [more]
B9R9U7_RICCO4.1e-1633.99Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1500710 PE=4 SV=1[more]
BLAST of Lsi05G008960 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45120.14.1e-1531.36 C2H2-like zinc finger protein[more]
AT3G60580.11.4e-1229.84 C2H2-like zinc finger protein[more]
AT3G49930.12.7e-1132.42 C2H2 and C2HC zinc fingers superfamily protein[more]
AT1G49900.13.6e-1143.04 C2H2 type zinc finger transcription factor family[more]
AT3G19580.16.1e-1130.21 zinc-finger protein 2[more]
BLAST of Lsi05G008960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|643706306|gb|KDP22438.1|1.0e-2033.33hypothetical protein JCGZ_26269 [Jatropha curcas][more]
gi|743808754|ref|XP_011018344.1|2.0e-1933.87PREDICTED: zinc finger protein ZAT9-like [Populus euphratica][more]
gi|641830848|gb|KDO49924.1|2.6e-1936.71hypothetical protein CISIN_1g038614mg [Citrus sinensis][more]
gi|567857900|ref|XP_006421633.1|4.4e-1936.49hypothetical protein CICLE_v10007101mg [Citrus clementina][more]
gi|802769814|ref|XP_012090460.1|3.1e-1733.76PREDICTED: zinc finger protein ZAT9 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR015880Zinc finger, C2H2-like
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G008960.1Lsi05G008960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 208..231
score: 2.6E-7coord: 172..195
score: 4.3
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 211..231
score: -coord: 174..194
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 172..199
score: 10.055coord: 209..231
score: 9
IPR015880Zinc finger, C2H2-likeSMARTSM00355c2h2final6coord: 172..194
score: 0.13coord: 209..231
score: 0
NoneNo IPR availableunknownCoilCoilcoord: 145..165
scor
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 150..273
score: 5.1E-28coord: 96..131
score: 5.1
NoneNo IPR availablePANTHERPTHR26374:SF176C2H2 AND C2HC ZINC FINGER-CONTAINING PROTEIN-RELATEDcoord: 150..273
score: 5.1E-28coord: 96..131
score: 5.1
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 172..231
score: 2.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G008960Bhi05G000463Wax gourdlsiwgoB461
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G008960Watermelon (97103) v2lsiwmbB354
Lsi05G008960Wax gourdlsiwgoB459
Lsi05G008960Cucumber (Gy14) v1cgylsiB507
Lsi05G008960Cucurbita maxima (Rimu)cmalsiB581
Lsi05G008960Cucurbita moschata (Rifu)cmolsiB558
Lsi05G008960Cucurbita pepo (Zucchini)cpelsiB216
Lsi05G008960Cucurbita pepo (Zucchini)cpelsiB623
Lsi05G008960Wild cucumber (PI 183967)cpilsiB222
Lsi05G008960Wild cucumber (PI 183967)cpilsiB466
Lsi05G008960Cucumber (Chinese Long) v2culsiB221
Lsi05G008960Cucumber (Chinese Long) v2culsiB459
Lsi05G008960Melon (DHL92) v3.5.1lsimeB354
Lsi05G008960Watermelon (Charleston Gray)lsiwcgB316
Lsi05G008960Cucumber (Gy14) v2cgyblsiB208
Lsi05G008960Cucumber (Gy14) v2cgyblsiB427
Lsi05G008960Silver-seed gourdcarlsiB651
Lsi05G008960Cucumber (Chinese Long) v3cuclsiB240
Lsi05G008960Cucumber (Chinese Long) v3cuclsiB488