Lsi05G008540 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G008540
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCleavage and polyadenylation specificity factor subunit 1
Locationchr05 : 14079483 .. 14083138 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCAAACCAAACCTCCCCAAAGCCCTAGTCTTGTGGTCTCTTCTTCTCTAGCCTCTGCTCCTCCACATTCCGTTTCCAAAGTCCTCGAACTCTCGACTCCATAACTTTCTCTCAAGCTCCGCATTGTCTCTCATTTTATTTCTGAACATTCATTTTTCACTCTCGTAGGATGAGTTTTGCTGCTTATAGAATGATGCACTGGCCTACCGGCATCGAAAACTGCGATTCAGGCTTTATCACCCATTCTCGCGCCGACTTCGTCCCCGGTGTCACATCTCACACCGACGACCTTGACTCCGACTGGCAGCCCCGCCGAGAAATTGGTCCAGTTCCCAATCTCGTTGTCACCGCCGGCAATGTCCTCGAGGTATATGTTGTTAGGGTTCAAGAAGAAGGTGGAAGAGAATCAAGAAGTTCAGGAGAAGTCAGACGCGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTACAGGTATGCTCCAAAGTTTTGTGAATGTACTAATTGATTTTCATGTTACCATGTTCAATCTTATACACCATGGAGCAGCTTTTTGCGAGCTCCTCAATTTTGGGTCTTTTTGTTGCGTCTCATTTTCTACTTCTCAACAAAAATTAATGTGACTAGTTATCTTGAGCAAAGGAGGTTCGTTGATTTATATTTGGTAAGCACTTGCTATTTTTGTTCAGTGATAATTTACTATTCTTGCGTTTTGCTTTGCAGGTTGCATGGTAATGTTGAGTCCATGGCGATTTTGTCTAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATTATATTAGTCTTTCAAGAAGCAAAAATTTCAGTGCTAGAGTTTGATGATTCTATCCATAGTCTCCGTACAAGGTGGGTGGAGGTGTTAAAGGAACGAGATATTTGTTTGCCTTTTTGATTGTTCTCTACAATCATTTAGTCATTCACATGTGCAGGTTTTTGAACTTTCAAACAAAGATAATGTGCATAATCAGAAATAGTTACATTTACATGGGATGTGTAAATTTTAAGCTTTTGGTATTTTCTTTTGGCTATATGTGTCATGTGTATCTACTAAAACTCTTTCTCATTGTTTGATCTATGATTAACATAATTGGGGACTAAGTCCCTAATTGTCGAATTCATATTTGTCACAATTCTTGTGATTTTTCCTTTATTTTTTTTGGAGAGAAAAACATAATTGGTGCAAGTAGAAAATCGTTCATTCCAGATGTGATATCAGTGACGAGTTTTATTTATTATTTTTTGAAAGATAAGATACGAAGGCAATATAATTATTTGTTGGCGTTGAATGTACATTGCTGGAGCTTTTTTGTTCTTTCAAGATTCCTATTAGAATCTATGAAAACTTACATTTAGTATGGAATATGGTTCTTTAATCCGATATGCTATGCGATATAAATGTTATTCTCTTATCATCCTTTTGGTTTTAAACTTCTTAATTGTCTTGTTTATTTTCTCAAAATGGTTCAACATTATTAGTCAACTAGACCATCTTCTATTGAAGTTATATATATATATAAAATTCATGGAACATAAACAAAGCTCCAGGAAGTTACTAAAATCCTATTATATATTTAGTATCTAAGAACTCAAAGTGTAAATCATTCCAAATGCACATGATCCTAGTCTTTCTCCACTCCCTCGAATGTTGTGGATTTACGCTGCCTACTAGCTCGATTGACCAACAATTTTCTTGGGCTCTAATCTCATTATGTGACTTAAATATCAAGACAACATACTTGTTTGTTATGCATGTAATTATCCTGTCCCTCCAAATAATTTCCTAATTGTTTCCTTCCGTCCTCCACCAGATAGATGTACAAAGGTACTATTCTTGGAAAGAACTTGTGCAAGATGATAGCCTGGTTATTTATTATTTTAGTTGCCTAAATTTATTAGGCATTTGACAATTACTATTGAGTGGAAATTTTCGTTTGTAGCTCAATGCATTGCTTTGAGGGCCCTCAATGGCTTCATTTGAAAAGAGGTCGGGAATCATTTGCAAGAGGTCCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGAGGAGTTCTTGTTTATGGTTTGCAAATGATAATACTTAAGGCTTCTCAGGTGTTTTTTGCCTTTCAAACCTTTTTATTTGGTTGTGCATGACAATTTAATGCCATGCTTTGTTAGTACAATAAATATGTTAAAATTGACTCGTCATTCCCAATGTTTGCACGTCGAGTGAGATGAGATATGCCCAGCATGTTTAGGTAATGCACTAGAACTGGACGTAGTAATTTTTAGTGTTGATGGTAGTCAAACTCATACTAATGGAGGTGACAAATATGAAGAAAATGTTTAGAAAACTTGTTTGACTATACTTTTGACTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAACCTTAATGGACATTGTTGATTGCCATTATATTTTCAGTTGACTATTGGGAAGAAAAATAAAATTGTTGTATTTTTTTTCTCACATATCCAAAACATATACAAATTCCTCTTATTTAGAAAAAAAGACCATCAACCAATAAGGAAAAGGAATCATCAACAAATGAAATCTGTTCTTAATCAATCTAACTTTGTAAGAGTTGGTAGACAAAAGGAGGATGCTGAATCTGTTCCATCTTGATAAAGCCTTATTGACATGGAAGGCAAGTACCTGACAAAACGATACTCCTATGTTCTAACTAATAAAGGATGGTGTACCATCGGTAACTTTATTCATAAGTTTGAAAGGTGAGATCAACCATCAATGAAAAAATTTCCATCATTCCTTCCTATGGTGGATGGATTAAAATTTGAAACATGTTTGTTTTCTTAGGCTCCTTGCAATGGTCTTTTTCTTTTTTGCTTGCATGCATGTATCTTCATTTATCTAAATGAAAGTTTGGTTTCTCATGATTTGTTTGTTAGGCTGGTTCTAGTTTGGTTGTGGACGATGAAGCTTTTGGTAACACTGGTGCAATTTCTGCTCGAGTTGAATCATCATACCTAATTAACCTAAGGGATTTGGATGTGAAGCATGTAAAGGATTTTGTATTTGTACATGGTGAGTGTGTATAG

mRNA sequence

CGCCAAACCAAACCTCCCCAAAGCCCTAGTCTTGTGGTCTCTTCTTCTCTAGCCTCTGCTCCTCCACATTCCGTTTCCAAAGATGAGTTTTGCTGCTTATAGAATGATGCACTGGCCTACCGGCATCGAAAACTGCGATTCAGGCTTTATCACCCATTCTCGCGCCGACTTCGTCCCCGGTGTCACATCTCACACCGACGACCTTGACTCCGACTGGCAGCCCCGCCGAGAAATTGGTCCAGTTCCCAATCTCGTTGTCACCGCCGGCAATGTCCTCGAGGTATATGTTGTTAGGGTTCAAGAAGAAGGTGGAAGAGAATCAAGAAGTTCAGGAGAAGTCAGACGCGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTACAGGTTGCATGGTAATGTTGAGTCCATGGCGATTTTGTCTAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATTATATTAGTCTTTCAAGAAGCAAAAATTTCAGTGCTAGAGTTTGATGATTCTATCCATAGTCTCCGTACAAGCTCAATGCATTGCTTTGAGGGCCCTCAATGGCTTCATTTGAAAAGAGGTCGGGAATCATTTGCAAGAGGTCCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGAGGAGTTCTTGTTTATGGTTTGCAAATGATAATACTTAAGGCTTCTCAGGCTGGTTCTAGTTTGGTTGTGGACGATGAAGCTTTTGGTAACACTGGTGCAATTTCTGCTCGAGTTGAATCATCATACCTAATTAACCTAAGGGATTTGGATGTGAAGCATGTAAAGGATTTTGTATTTGTACATGGTGAGTGTGTATAG

Coding sequence (CDS)

ATGAGTTTTGCTGCTTATAGAATGATGCACTGGCCTACCGGCATCGAAAACTGCGATTCAGGCTTTATCACCCATTCTCGCGCCGACTTCGTCCCCGGTGTCACATCTCACACCGACGACCTTGACTCCGACTGGCAGCCCCGCCGAGAAATTGGTCCAGTTCCCAATCTCGTTGTCACCGCCGGCAATGTCCTCGAGGTATATGTTGTTAGGGTTCAAGAAGAAGGTGGAAGAGAATCAAGAAGTTCAGGAGAAGTCAGACGCGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTACAGGTTGCATGGTAATGTTGAGTCCATGGCGATTTTGTCTAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATTATATTAGTCTTTCAAGAAGCAAAAATTTCAGTGCTAGAGTTTGATGATTCTATCCATAGTCTCCGTACAAGCTCAATGCATTGCTTTGAGGGCCCTCAATGGCTTCATTTGAAAAGAGGTCGGGAATCATTTGCAAGAGGTCCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGAGGAGTTCTTGTTTATGGTTTGCAAATGATAATACTTAAGGCTTCTCAGGCTGGTTCTAGTTTGGTTGTGGACGATGAAGCTTTTGGTAACACTGGTGCAATTTCTGCTCGAGTTGAATCATCATACCTAATTAACCTAAGGGATTTGGATGTGAAGCATGTAAAGGATTTTGTATTTGTACATGGTGAGTGTGTATAG

Protein sequence

MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHGECV
Homology
[Close]
BLAST of Lsi05G008540 vs. Swiss-Prot
Match: CPSF1_ARATH (Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2)

HSP 1 Score: 382.1 bits (980), Expect = 4.8e-105
Identity = 185/258 (71.71%), Postives = 219/258 (84.88%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADF---VPGVTSHTDDLDSDW-QPRREIGPVPN 60
           MSFAAY+MMHWPTG+ENC SG+ITHS +D    +P V+ H DD++++W  P+R IGP+PN
Sbjct: 1   MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVH-DDIEAEWPNPKRGIGPLPN 60

Query: 61  LVVTAGNVLEVYVVRVQEEGG-RESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESM 120
           +V+TA N+LEVY+VR QEEG  +E R+    +RGG+MDGV G SLELVCHYRLHGNVES+
Sbjct: 61  VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 120

Query: 121 AILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRES 180
           A+L   GG+ SK RDSIIL F++AKISVLEFDDSIHSLR +SMHCFEGP WLHLKRGRES
Sbjct: 121 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 180

Query: 181 FARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLI 240
           F RGP+VKVDPQGRCGGVLVYGLQMIILK SQ GS LV DD+AF + G +SARVESSY+I
Sbjct: 181 FPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYII 240

Query: 241 NLRDLDVKHVKDFVFVHG 254
           NLRDL++KHVKDFVF+HG
Sbjct: 241 NLRDLEMKHVKDFVFLHG 257

[Close]
BLAST of Lsi05G008540 vs. Swiss-Prot
Match: CPSF1_ORYSJ (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2)

HSP 1 Score: 298.1 bits (762), Expect = 9.1e-80
Identity = 153/266 (57.52%), Postives = 191/266 (71.80%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFV---------PGVTSHTDDLDSDWQPRREI 60
           MS+AAY+MMHWPTG+++C +GF+THS +D           PG     D   +  +PRR +
Sbjct: 1   MSYAAYKMMHWPTGVDHCAAGFVTHSPSDAAAFFTAATVGPGPEGDIDSAAAASRPRR-L 60

Query: 61  GPVPNLVVTAGNVLEVYVVRVQ---EEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRL 120
           GP PNLVV A NVLEVY VR +   E+GG  ++ S     G ++DG+SGA LELVC+YRL
Sbjct: 61  GPSPNLVVAAANVLEVYAVRAETAAEDGGGGTQPSSS--SGAVLDGISGARLELVCYYRL 120

Query: 121 HGNVESMAILSSRGGDGSK-KRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWL 180
           HGN+ESM +LS    DG++ +R +I L F++AKI+ LEFDD+IH LRTSSMHCFEGP+W 
Sbjct: 121 HGNIESMTVLS----DGAENRRATIALAFKDAKITCLEFDDAIHGLRTSSMHCFEGPEWQ 180

Query: 181 HLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISA 240
           HLKRGRESFA GPV+K DP GRCG  L YGLQMIILKA+Q G SLV +DE      + + 
Sbjct: 181 HLKRGRESFAWGPVIKADPLGRCGAALAYGLQMIILKAAQVGHSLVGEDEPTCALSSTAV 240

Query: 241 RVESSYLINLRDLDVKHVKDFVFVHG 254
            +ESSYLI+LR LD+ HVKDF FVHG
Sbjct: 241 CIESSYLIDLRALDMNHVKDFAFVHG 259

[Close]
BLAST of Lsi05G008540 vs. Swiss-Prot
Match: CPSF1_MOUSE (Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-21
Identity = 76/254 (29.92%), Postives = 120/254 (47.24%), Query Frame = 1 

Query: 3   FAAYRMMHWPTGIE-NCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTA 62
           +A Y+  H PTG+E      F  +S  + V   TS                         
Sbjct: 2   YAVYKQAHPPTGLEFTMYCNFFNNSERNLVVAGTS------------------------- 61

Query: 63  GNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSR 122
               ++YV R+  +    +++ G        +      LELV  +   GNV SMA +   
Sbjct: 62  ----QLYVYRLNRDAEALTKNDGSTEGKAHRE-----KLELVASFSFFGNVMSMASVQLA 121

Query: 123 GGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPV 182
           G     KRD+++L F++AK+SV+E+D   H L+T S+H FE P+   L+ G       P 
Sbjct: 122 GA----KRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE---LRDGFVQNVHTPR 181

Query: 183 VKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLD 242
           V+VDP GRC  +L+YG ++++L   +   SL  + E     G  S+ +  SY+I++R LD
Sbjct: 182 VRVDPDGRCAAMLIYGTRLVVLPFRR--ESLAEEHEGLMGEGQRSSFL-PSYIIDVRALD 211

Query: 243 VK--HVKDFVFVHG 254
            K  ++ D  F+HG
Sbjct: 242 EKLLNIIDLQFLHG 211

[Close]
BLAST of Lsi05G008540 vs. Swiss-Prot
Match: CPSF1_BOVIN (Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-21
Identity = 77/254 (30.31%), Postives = 121/254 (47.64%), Query Frame = 1 

Query: 3   FAAYRMMHWPTGIE-NCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTA 62
           +A Y+  H PTG+E +    F  +S  + V   TS                         
Sbjct: 2   YAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTS------------------------- 61

Query: 63  GNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSR 122
               ++YV R+  +   E+ +  +    G         LELV  +   GNV SMA +   
Sbjct: 62  ----QLYVYRLNRDS--EAPTKNDRSTDGKAHREHREKLELVASFSFFGNVMSMASVQLA 121

Query: 123 GGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPV 182
           G     KRD+++L F++AK+SV+E+D   H L+T S+H FE P+   L+ G       P 
Sbjct: 122 GA----KRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE---LRDGFVQNVHTPR 181

Query: 183 VKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLD 242
           V+VDP GRC  +L+YG ++++L   +   SL  + E     G  S+ +  SY+I++R LD
Sbjct: 182 VRVDPDGRCAAMLIYGTRLVVLPFRR--ESLAEEHEGLVGEGQRSSFL-PSYIIDVRALD 214

Query: 243 VK--HVKDFVFVHG 254
            K  ++ D  F+HG
Sbjct: 242 EKLLNIVDLQFLHG 214

[Close]
BLAST of Lsi05G008540 vs. Swiss-Prot
Match: CPSF1_HUMAN (Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPSF1 PE=1 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-20
Identity = 70/200 (35.00%), Postives = 105/200 (52.50%), Query Frame = 1 

Query: 56  NLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESM 115
           NLVV   + L VY +    E   ++  S E +            LEL   +   GNV SM
Sbjct: 29  NLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK-------AHREKLELAASFSFFGNVMSM 88

Query: 116 AILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRES 175
           A +   G     KRD+++L F++AK+SV+E+D   H L+T S+H FE P+   L+ G   
Sbjct: 89  ASVQLAGA----KRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE---LRDGFVQ 148

Query: 176 FARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLI 235
               P V+VDP GRC  +LVYG ++++L   +   SL  + E     G  S+ +  SY+I
Sbjct: 149 NVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRR--ESLAEEHEGLVGEGQRSSFL-PSYII 208

Query: 236 NLRDLDVK--HVKDFVFVHG 254
           ++R LD K  ++ D  F+HG
Sbjct: 209 DVRALDEKLLNIIDLQFLHG 211

[Close]
BLAST of Lsi05G008540 vs. TrEMBL
Match: A0A0A0LKI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074280 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 3.3e-137
Identity = 242/253 (95.65%), Postives = 247/253 (97.63%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVT 60
           MSFAAYRMMHWPTGIENCDS +ITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVT
Sbjct: 1   MSFAAYRMMHWPTGIENCDSAYITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60

Query: 61  AGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120
           AGNVLEVYVVRV EEGGRES+SSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS
Sbjct: 61  AGNVLEVYVVRVLEEGGRESKSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120

Query: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGP 180
           RGGDGSKKRDSIILVFQEAKISVLEFDDS HSLRTSSMHCF+GPQWLHLKRGRESFARGP
Sbjct: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSTHSLRTSSMHCFDGPQWLHLKRGRESFARGP 180

Query: 181 VVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDL 240
           VVKVDPQGRCGGVLVYGLQMIILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDL
Sbjct: 181 VVKVDPQGRCGGVLVYGLQMIILKASQAGSGLVVDDEAFGNTGAISARVESSYLINLRDL 240

Query: 241 DVKHVKDFVFVHG 254
           DVKHVKDFVFVHG
Sbjct: 241 DVKHVKDFVFVHG 253

[Close]
BLAST of Lsi05G008540 vs. TrEMBL
Match: A0A061G7F2_THECC (Cleavage and polyadenylation specificity factor 160 isoform 1 OS=Theobroma cacao GN=TCM_014995 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.6e-115
Identity = 199/254 (78.35%), Postives = 231/254 (90.94%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVT-SHTDDLDSDWQPRREIGPVPNLVV 60
           MS+AAY+MMHWPTGIENC SGF+TH RADF P +  + T+DL+S+W  RR IGPVPNL+V
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTHCRADFTPQIPLNQTEDLESEWPARRGIGPVPNLIV 60

Query: 61  TAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILS 120
           TA N+LE+YVVRVQEEG RE+R+S EV+RGG++DGVSG SLELVC+YRLHGNVESMA+LS
Sbjct: 61  TAANLLEIYVVRVQEEGRREARNSTEVKRGGVLDGVSGVSLELVCNYRLHGNVESMAVLS 120

Query: 121 SRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARG 180
             GGDGS++RDSIIL F++AKISVLEFDDSIH LRT+SMHCFEGP+WLHLKRGRESFARG
Sbjct: 121 IGGGDGSRRRDSIILAFKDAKISVLEFDDSIHGLRTTSMHCFEGPEWLHLKRGRESFARG 180

Query: 181 PVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRD 240
           P+VKVDPQGRCGGVLVY LQMIILKASQAGS  V +D+AFG+ GA+SARVESSY+INLRD
Sbjct: 181 PLVKVDPQGRCGGVLVYDLQMIILKASQAGSGFVGEDDAFGSGGAVSARVESSYIINLRD 240

Query: 241 LDVKHVKDFVFVHG 254
           LDVKH+KDF+FVHG
Sbjct: 241 LDVKHIKDFIFVHG 254

[Close]
BLAST of Lsi05G008540 vs. TrEMBL
Match: M5X6F1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000211mg PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.5e-113
Identity = 200/256 (78.12%), Postives = 232/256 (90.62%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTS-HTDDLDSDWQP-RREIGPVPNLV 60
           MSFAAY+MMHWPTGIENC SGFI+HSR+DFVP +    T+DL+S+W   RREIGP+P+LV
Sbjct: 1   MSFAAYKMMHWPTGIENCASGFISHSRSDFVPRIPPIQTEDLESEWPTSRREIGPIPDLV 60

Query: 61  VTAGNVLEVYVVRVQEEGG-RESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAI 120
           VTAGNVLEVYVVRVQEE G R  R+SGE +RGG+MDGVSGASLELVCHYRLHGNV +MA+
Sbjct: 61  VTAGNVLEVYVVRVQEEDGTRGPRASGEPKRGGLMDGVSGASLELVCHYRLHGNVVTMAV 120

Query: 121 LSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFA 180
           LSS GGDGS++RDSIIL F++AKISVLEFDDSIH LRTSSMHCFEGP+WLHL+RGRESFA
Sbjct: 121 LSSGGGDGSRRRDSIILTFEDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLRRGRESFA 180

Query: 181 RGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINL 240
           RGP+VKVDPQGRCG +LVYGLQMIILKASQ GS LV DD++FG+ GAIS+R+ESSY++NL
Sbjct: 181 RGPLVKVDPQGRCGSILVYGLQMIILKASQGGSGLVGDDDSFGSGGAISSRIESSYIVNL 240

Query: 241 RDLDVKHVKDFVFVHG 254
           RD+D+KHVKDF F+HG
Sbjct: 241 RDMDMKHVKDFTFLHG 256

[Close]
BLAST of Lsi05G008540 vs. TrEMBL
Match: A0A0D2RRD1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G065300 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.6e-112
Identity = 196/254 (77.17%), Postives = 226/254 (88.98%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVT-SHTDDLDSDWQPRREIGPVPNLVV 60
           MS+AAY+MMHWPTGIENC SGF+T+ RADF P +  +HT+DL+SDW  RR IGPVPNL+V
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTNCRADFTPQIPLNHTEDLESDWSSRRGIGPVPNLIV 60

Query: 61  TAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILS 120
           TA NVLE+YVVRVQEEG RE+R+S EV+RGGIMDGVS  SLELVC YRLHGNVESMA+LS
Sbjct: 61  TAANVLELYVVRVQEEGTREARNSTEVKRGGIMDGVSAVSLELVCSYRLHGNVESMAVLS 120

Query: 121 SRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARG 180
             GGD S++RDSIIL FQ+AKI+VLEFDDS HSL+TSSMHCFEGP+WLHLKRGRESFARG
Sbjct: 121 IGGGDVSRRRDSIILTFQDAKIAVLEFDDSTHSLQTSSMHCFEGPEWLHLKRGRESFARG 180

Query: 181 PVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRD 240
           P+VK DPQGRC GVLVYGLQMIILKA+QAGS  V +D+AFG+   +SARVESSY+INLRD
Sbjct: 181 PLVKADPQGRCSGVLVYGLQMIILKAAQAGSGFVGEDDAFGSGATVSARVESSYIINLRD 240

Query: 241 LDVKHVKDFVFVHG 254
           LD+KH+KDF+FVHG
Sbjct: 241 LDMKHIKDFIFVHG 254

[Close]
BLAST of Lsi05G008540 vs. TrEMBL
Match: A0A067JEX3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26213 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 6.3e-112
Identity = 193/253 (76.28%), Postives = 227/253 (89.72%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTS-HTDDLDSDWQPRREIGPVPNLVV 60
           MS+AAY+MMHW TGIENC SGF+TH RADFVP + S  TD+++S+W  +R IGPVPNL+V
Sbjct: 1   MSYAAYKMMHWSTGIENCASGFLTHCRADFVPQIPSVQTDEVESEWPAKRGIGPVPNLIV 60

Query: 61  TAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILS 120
           TAGNVLEVYVVRVQEEG RESR+S E +RGG+MDGVSGASLELVCHYRLHGN+ESMA+L 
Sbjct: 61  TAGNVLEVYVVRVQEEGSRESRNSRESKRGGVMDGVSGASLELVCHYRLHGNIESMAVLP 120

Query: 121 SRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARG 180
             GGDGS++RDSIIL F+++K+SVLEFDDSIH LRTSSMHCFEGP+WLHLKRGRESFARG
Sbjct: 121 IEGGDGSRRRDSIILSFKDSKMSVLEFDDSIHGLRTSSMHCFEGPEWLHLKRGRESFARG 180

Query: 181 PVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRD 240
           P+VKVDPQGRCGGVLVY LQMIILKA+QA S LV DD+  G+ G++S+R++SSY+INLRD
Sbjct: 181 PLVKVDPQGRCGGVLVYDLQMIILKAAQAVSGLVGDDDTLGSGGSVSSRIQSSYIINLRD 240

Query: 241 LDVKHVKDFVFVH 253
           LD+KHVKDF+F H
Sbjct: 241 LDMKHVKDFIFAH 253

[Close]
BLAST of Lsi05G008540 vs. TAIR10
Match: AT5G51660.1 (AT5G51660.1 cleavage and polyadenylation specificity factor 160)

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-106
Identity = 185/258 (71.71%), Postives = 219/258 (84.88%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADF---VPGVTSHTDDLDSDW-QPRREIGPVPN 60
           MSFAAY+MMHWPTG+ENC SG+ITHS +D    +P V+ H DD++++W  P+R IGP+PN
Sbjct: 1   MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVH-DDIEAEWPNPKRGIGPLPN 60

Query: 61  LVVTAGNVLEVYVVRVQEEGG-RESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESM 120
           +V+TA N+LEVY+VR QEEG  +E R+    +RGG+MDGV G SLELVCHYRLHGNVES+
Sbjct: 61  VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 120

Query: 121 AILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRES 180
           A+L   GG+ SK RDSIIL F++AKISVLEFDDSIHSLR +SMHCFEGP WLHLKRGRES
Sbjct: 121 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 180

Query: 181 FARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLI 240
           F RGP+VKVDPQGRCGGVLVYGLQMIILK SQ GS LV DD+AF + G +SARVESSY+I
Sbjct: 181 FPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYII 240

Query: 241 NLRDLDVKHVKDFVFVHG 254
           NLRDL++KHVKDFVF+HG
Sbjct: 241 NLRDLEMKHVKDFVFLHG 257

[Close]
BLAST of Lsi05G008540 vs. NCBI nr
Match: gi|659082456|ref|XP_008441850.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 501.1 bits (1289), Expect = 1.1e-138
Identity = 246/253 (97.23%), Postives = 248/253 (98.02%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVT 60
           MSFAAYRMMHWPTGIENCDS FITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVT
Sbjct: 1   MSFAAYRMMHWPTGIENCDSAFITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60

Query: 61  AGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120
           AGNVLEVYVVRV EEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS
Sbjct: 61  AGNVLEVYVVRVLEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120

Query: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGP 180
           RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGP
Sbjct: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGP 180

Query: 181 VVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDL 240
           VVKVDPQGRCGGVLVYGLQMIILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDL
Sbjct: 181 VVKVDPQGRCGGVLVYGLQMIILKASQAGSGLVVDDEAFGNTGAISARVESSYLINLRDL 240

Query: 241 DVKHVKDFVFVHG 254
           DVKHVKDFVFVHG
Sbjct: 241 DVKHVKDFVFVHG 253

[Close]
BLAST of Lsi05G008540 vs. NCBI nr
Match: gi|778667872|ref|XP_011648998.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Cucumis sativus])

HSP 1 Score: 495.7 bits (1275), Expect = 4.7e-137
Identity = 242/253 (95.65%), Postives = 247/253 (97.63%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVT 60
           MSFAAYRMMHWPTGIENCDS +ITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVT
Sbjct: 1   MSFAAYRMMHWPTGIENCDSAYITHSRADFVPAVTSHSDDLDSDWHPRRDIGPVPNLVVT 60

Query: 61  AGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120
           AGNVLEVYVVRV EEGGRES+SSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS
Sbjct: 61  AGNVLEVYVVRVLEEGGRESKSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSS 120

Query: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGP 180
           RGGDGSKKRDSIILVFQEAKISVLEFDDS HSLRTSSMHCF+GPQWLHLKRGRESFARGP
Sbjct: 121 RGGDGSKKRDSIILVFQEAKISVLEFDDSTHSLRTSSMHCFDGPQWLHLKRGRESFARGP 180

Query: 181 VVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDL 240
           VVKVDPQGRCGGVLVYGLQMIILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDL
Sbjct: 181 VVKVDPQGRCGGVLVYGLQMIILKASQAGSGLVVDDEAFGNTGAISARVESSYLINLRDL 240

Query: 241 DVKHVKDFVFVHG 254
           DVKHVKDFVFVHG
Sbjct: 241 DVKHVKDFVFVHG 253

[Close]
BLAST of Lsi05G008540 vs. NCBI nr
Match: gi|590671948|ref|XP_007038473.1| (Cleavage and polyadenylation specificity factor 160 isoform 1 [Theobroma cacao])

HSP 1 Score: 423.7 bits (1088), Expect = 2.3e-115
Identity = 199/254 (78.35%), Postives = 231/254 (90.94%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVT-SHTDDLDSDWQPRREIGPVPNLVV 60
           MS+AAY+MMHWPTGIENC SGF+TH RADF P +  + T+DL+S+W  RR IGPVPNL+V
Sbjct: 1   MSYAAYKMMHWPTGIENCASGFVTHCRADFTPQIPLNQTEDLESEWPARRGIGPVPNLIV 60

Query: 61  TAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILS 120
           TA N+LE+YVVRVQEEG RE+R+S EV+RGG++DGVSG SLELVC+YRLHGNVESMA+LS
Sbjct: 61  TAANLLEIYVVRVQEEGRREARNSTEVKRGGVLDGVSGVSLELVCNYRLHGNVESMAVLS 120

Query: 121 SRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARG 180
             GGDGS++RDSIIL F++AKISVLEFDDSIH LRT+SMHCFEGP+WLHLKRGRESFARG
Sbjct: 121 IGGGDGSRRRDSIILAFKDAKISVLEFDDSIHGLRTTSMHCFEGPEWLHLKRGRESFARG 180

Query: 181 PVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRD 240
           P+VKVDPQGRCGGVLVY LQMIILKASQAGS  V +D+AFG+ GA+SARVESSY+INLRD
Sbjct: 181 PLVKVDPQGRCGGVLVYDLQMIILKASQAGSGFVGEDDAFGSGGAVSARVESSYIINLRD 240

Query: 241 LDVKHVKDFVFVHG 254
           LDVKH+KDF+FVHG
Sbjct: 241 LDVKHIKDFIFVHG 254

[Close]
BLAST of Lsi05G008540 vs. NCBI nr
Match: gi|1009122186|ref|XP_015877866.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Ziziphus jujuba])

HSP 1 Score: 420.6 bits (1080), Expect = 1.9e-114
Identity = 200/255 (78.43%), Postives = 228/255 (89.41%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTS-HTDDLDSDWQP-RREIGPVPNLV 60
           MSFAA++MMHWPTGIENC SGFITHSRADFVP +     DDLDSDW   RREIGP+PNLV
Sbjct: 1   MSFAAFKMMHWPTGIENCASGFITHSRADFVPRIPPIQNDDLDSDWSASRREIGPIPNLV 60

Query: 61  VTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAIL 120
           VTAGNVLEVYVVR+QEE  R SR+SGE RRGG+MDG+SGASLELVCHYRLHGNVE+MA+L
Sbjct: 61  VTAGNVLEVYVVRIQEESNRSSRASGESRRGGVMDGLSGASLELVCHYRLHGNVETMAVL 120

Query: 121 SSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFAR 180
           S+ GG+ S++RDSIIL FQ+AKISVL+FDDS H LRTSSMHCFEGP+WLHLKRGRESFAR
Sbjct: 121 STGGGESSRRRDSIILSFQDAKISVLDFDDSTHGLRTSSMHCFEGPKWLHLKRGRESFAR 180

Query: 181 GPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLR 240
           GP+VKVDPQGRCGGVLVY  QMIILKA+QAGS LVVD++   + GA+SA +ESSY+INLR
Sbjct: 181 GPLVKVDPQGRCGGVLVYDFQMIILKAAQAGSGLVVDEDTSSSGGAVSAHIESSYIINLR 240

Query: 241 DLDVKHVKDFVFVHG 254
           DLD+KH+KDF+FVHG
Sbjct: 241 DLDMKHIKDFIFVHG 255

[Close]
BLAST of Lsi05G008540 vs. NCBI nr
Match: gi|658016719|ref|XP_008343710.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like isoform X1 [Malus domestica])

HSP 1 Score: 420.6 bits (1080), Expect = 1.9e-114
Identity = 202/256 (78.91%), Postives = 231/256 (90.23%), Query Frame = 1 

Query: 1   MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTS-HTDDLDSDWQP-RREIGPVPNLV 60
           MSFAAY+MMHWPTGIENC SGFI+HSRADFVP +    TDDL+SDW P RREIGP+P+LV
Sbjct: 1   MSFAAYKMMHWPTGIENCASGFISHSRADFVPRMPQIQTDDLESDWPPTRREIGPIPDLV 60

Query: 61  VTAGNVLEVYVVRVQEE-GGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAI 120
           VTAGNVLEVYVVRVQEE G R SR+SGE +RGG+MDGVSGASLELVCHYR+HGNV +MA+
Sbjct: 61  VTAGNVLEVYVVRVQEEDGARGSRASGEPKRGGLMDGVSGASLELVCHYRMHGNVVTMAV 120

Query: 121 LSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFA 180
           LS  GGDGS++RDSI+L F++AKISVLEFDDSIH LRTSSMHCFEGP+WLHL+RGRESFA
Sbjct: 121 LSGGGGDGSRRRDSIVLTFEDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLRRGRESFA 180

Query: 181 RGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINL 240
           RGP+VKVDPQGRCGGVLVYG QMIILKA+Q GS LV +D+ FG+ GAISARV+SSY++NL
Sbjct: 181 RGPLVKVDPQGRCGGVLVYGFQMIILKAAQGGSGLVGEDDGFGSGGAISARVDSSYIVNL 240

Query: 241 RDLDVKHVKDFVFVHG 254
            D+D+KHVKDF FVHG
Sbjct: 241 GDMDMKHVKDFTFVHG 256

The following BLAST results are available for this feature:
BLAST of Lsi05G008540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CPSF1_ARATH4.8e-10571.71Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thalian... [more]
CPSF1_ORYSJ9.1e-8057.52Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sati... [more]
CPSF1_MOUSE3.3e-2129.92Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cps... [more]
CPSF1_BOVIN3.3e-2130.31Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1... [more]
CPSF1_HUMAN3.6e-2035.00Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPS... [more]
BLAST of Lsi05G008540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKI9_CUCSA3.3e-13795.65Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074280 PE=4 SV=1[more]
A0A061G7F2_THECC1.6e-11578.35Cleavage and polyadenylation specificity factor 160 isoform 1 OS=Theobroma cacao... [more]
M5X6F1_PRUPE1.5e-11378.13Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000211mg PE=4 SV=1[more]
A0A0D2RRD1_GOSRA1.6e-11277.17Uncharacterized protein OS=Gossypium raimondii GN=B456_006G065300 PE=4 SV=1[more]
A0A067JEX3_JATCU6.3e-11276.28Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26213 PE=4 SV=1[more]
BLAST of Lsi05G008540 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51660.12.7e-10671.71 cleavage and polyadenylation specificity factor 160[more]
BLAST of Lsi05G008540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082456|ref|XP_008441850.1|1.1e-13897.23PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 ... [more]
gi|778667872|ref|XP_011648998.1|4.7e-13795.65PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Cucumis sa... [more]
gi|590671948|ref|XP_007038473.1|2.3e-11578.35Cleavage and polyadenylation specificity factor 160 isoform 1 [Theobroma cacao][more]
gi|1009122186|ref|XP_015877866.1|1.9e-11478.43PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Ziziphus j... [more]
gi|658016719|ref|XP_008343710.1|1.9e-11478.91PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like isofor... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G008540.1Lsi05G008540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 56..69
score: 5.3E-75coord: 92..253
score: 5.3E-75coord: 1..29
score: 5.3
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 56..69
score: 5.3E-75coord: 92..253
score: 5.3E-75coord: 1..29
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G008540CmoCh19G003850Cucurbita moschata (Rifu)cmolsiB476
Lsi05G008540Cla009451Watermelon (97103) v1lsiwmB343
Lsi05G008540ClCG09G013360Watermelon (Charleston Gray)lsiwcgB316
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G008540Watermelon (97103) v2lsiwmbB354
Lsi05G008540Wax gourdlsiwgoB461
Lsi05G008540Cucurbita pepo (Zucchini)cpelsiB216