Lsi05G008220 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G008220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 13013152 .. 13018357 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTCGTACAAAACCCACACCCGAATGGAACCCACAGTATGCAGAATGGAACCTAAGAGGAACCACGACACCCCACGACACCCTTACCCGGATGGAACTCAAGAGGCAGACGGACCGATCTTTGGCCGCTCCAACCATAGGCAAGGCTAAGCGAGAGGGACGCGTGGAGGGGCGCGTCGGGGTGAACAATCAGCGAGAGGGCATCGTCAGGATGAACGGTAGGCGAGAGGAATGAGTGAACGGCCAGCTGAGGCGCGAACGACCGGTTGAAGCGCGACAGACTGCGATTGAGGATGCGAGGGACTGCTATTGAGATGCCTGCGAGGGACTGCGGCGGCAAGATATTGAAAAGAAGCAGACTGCCTTTCTTTCCAATTCAATTTTCAACTTTTCTAGGTAAAACTCTATTTTGTCTTATTTGAAACTTTAAGTATTATTTTTTTTTTAAAATCATTCATTGTTGCGGTGGTTTGTGTTTTTTTTTTTTAAATTAACCCTATTTTGTGTTGACAAGACAGGTATTGTGCAGTGTGAGAATTATTGCATTAGAGTGTATTTGTGGTTTTGGGATGTGTTTGAAACTTTCTACTTCCTAGTTGGAAATGTTATTAATATGGGTTACTTGAGGGCAATTTTGACAACTGTTAATTATTATTGTCAATTATTTAATTATATTTGCTATTTTAACAATTTCAAAAATAATTTGCTATTTTTTCAAATCAAACCTCTAAATTTGCTATTTATCTATTGAGCCCTTATTTTTTTTACCAACTCAACCCAACTGTGTTGCGTACTGTTGGGCTTTTACCATTTGTGAATGCCAAATAGCCCCTGCTTGAGTATGCGTACTGTTGTGTTGGGCTTTTACCATTTGTGACTCACACATTCTGCTTTATTCTTGAGCTTTGTCTAATGGGACACATGCCTACAAAGTTTGTTACAAGAATTTGTTATGAGAATATTCTCCTCAGGTTTTTTCATTGTAAAATGGAATGATGATCCTTGAGGGCTTCATCTTCTTATAGCCCTCAATCTACTCATTTTGTTGTAACAAAAATTTGGTGAACTATGCTACAACGAAATGGTTTCTCTCTGATTCACAGTGGATGTAGACTTCCATAGTCGAACCACTATAATTACTTGTGTCCTCTATTTTCTTCTCTTATCTTCATTGTTACTTGTTCTATTATTTTTCTGCAATTTGTCATTTGGTATCAGAGCCACGACTTTCGTATTTTCTCCTTCAGCTCTCATATTTTATTACTCACTACGTTTTTCTTTGGCACTCTGATTTCTAGAAGATTTTCTTCTTCAATGATGTCTGCGAGATCTGAACTCGATAAATTTGACGGCAAAGGAGATTTCAACGTTTGGAAGAAGAAGATGAAGGTGCTTCTTGTACAACAGAAGGTTGTGAAAGCCCTAATTGATCAAAGTAAGTTGCCTAAAACTATGACAGAAGTTGAAAAACAAGATATTGATGAAACTGCTTATAGTATCATCATTTTGTATCTTGCTGATAATGATTTAAGATGCGTGAGTGAAATTGAAAATGTTTCTAAACTTTGGACTAAACTTGATACTCTCTATATGTCGGAATCACTTACAAATAAGATCTATATGAAAGAGAGGTTGTTTAGCTACAAAATGGATGCATCTAAAAGTTAAGAAGAAAACATAGATGAGTTTAATCGAATCTGTCAAGATTTAGTTAATTATGGGAAAAATTGGATGCAGAAAATCAAGTTGTCATACTTTTGAATTCGCTTCTTGATAAATATAAAGAGATAAAATCTGCTATTAAGTATGGCAGAGATTCATTAACGATGGATATAGTTCTTAACTCTCTTCGTTCAAAGGAGTTGGAACTCAAAACAGGGAAGAAGGATTCTAAGGTGTTGTTTACAAAAGGCAAGCATTCAAAAGGTCAGAATTCCAAAAACAATAAGCAGGTAAGTAAGCCTAATTCTAAGGGAAATCAGAAAGAAAAAATTACATGTAACTATTGTAAAAAGGAAGGCCACATTAAATATGATTGTCCTATTTTAAGGAAGAAATGCACGCTTTCTGTTCGAAAGGAGACTTCAGTAGCCATAAATATCCATGAAGACTATGAAAATGTTGAAGTTCTGGTGGTTCTACCTTTGATGAATCAGAGGAATGGATAATGAATTCTGGTTCCACATTCCACAGGACACCTAATAAATTTTTCTTTGCAGATCTTGAAGAGTTTGATGGTGATTCAGTGGCTATGGGCAACAAACAGAGCTGTGAAATTAAAGCATCAGATCCATTAGATTTCACTTGGATGATGGAGCTCAAAAGGTTTTATCATCTATCCGATATGCTCCAACATTAAGAAGAAATCTAATCTCCTTGGGAACACTTGACAGAGCCAATTTAAGCTACAAGTCTGAAGATGGAAATCTGGTAGTTTACGAAGGTTCAGAGGTAAAATTGAAAGGAGTTCTAAAAAATGGTTTATATGTTTTGTAGGAAAGTGTTATATCATTTGAAGCAAATATCATCTCTAAGGAGGTTAATAAATCTACTCAACTCTGGCACCAACGACTTGCTCACATCAGTCAGAAGGGCCTAAACTCATTGTTCCAACAAGGCCCTAATTGGGAAGCACAAATCTACAAAGTTGACATTTTGTGATCAATGCGTTTTGGGCAAGGCAACTCGACATCCCTTCAACAAAAGCCAAATGAAATCACAGGGTAAGCTTGACTTTATTCATTCAAATCTTTGGGACCATCTTCTGTATAGACTCATGGTGGTGCATGGTATTTTCTTACTCTCATTCATGATTTCTCTAGAAAGACATGGGTGCTTTTGTTGAAAACTAAGGATGAAACATTTGAGAAATTTGTTGAATGGAAGAACTTAGTTGAAAATTCTACTGGTAGGAAAATTAAAACCATTAAACCTGATAATGGTCTAAAGTTCTTAAATGAAAGGTTTAGAAAACTATGTAGTGATCATGGTATTGATAGACATCTGACAGTCCTGGGAACCCCCAACAGAATGGTCTAGCTGAAAGATATAATAGAATCATACTTAACAAAGTTAGATGTATGCTGTCAAATTCCTACCTACCAAAATCTTTTAGGGGAGAAGCAATTAACACTACTATTTATTTGATAAATAGAAGTCCATCAACAGCTTTAAACTTCAAAACTCCTCAAGAATTTTGGAATGGACAACCACCTAAGTTAGATCACTTAAGAACTTTTCGGTGTACTGCCTTTGCTCACATAAAACAAGAGAAACTTGAACCAAGAGCTAAAAAATGTATGTTTCTTGGATATCCTCATGGTGTTAAAGGTTAAAGGCTTTGGTCACTAGAAAAAGGGGAAAATAAATGTTTCATAAGCAGGGATGTCACTTCTAATGAGGATTTGATGCCTTGGAAAGAATCTTCTAGGGACAAATCATCCTCATCTTCTGTTACAAAATATGTTGATCTAGACATCCAACTTAAACATCATGAAACAAACTTTGATTCATCTAGAGAAAGCTCTTTAAACCATTCCCCTTATGAACCTACTTCTAGCCAAGAACTTGTTATTGATCAAGAAATAGAAAATTCAGAGGGTGACTCTCAAATATCTAATCTACAAGTTTTAGATCCATAACCTCTTCAATTACAATCTAATTTGTTAACTAGAGATAGGGAAAGAAGAGTTATTCGACCCCCTACTCGATATGAAGTCGATTTTGTTGGTTTTGCTTTGAATTGCTTTGAGATAACTTACCACCAAAACCAAACACTTTTACTCAAGCAATGAATTTTGAACATAAAGAAAAATGATTAGAGGCAATGAATATTGAAATTAATTCTCTCAACAAGAACTCAACTTGGGTCCTAGTTGAAAAACCTAAAAATTAGAAGATTGTTGATTGTAGATGGATTTTTAAAGTTAAACCGAGCATTAAAGATTTTCAACAACCTCGTTATAAAGCATGGTTAGTTGTTAAAGGTTTCACACAAGATGAGGGCATTGATTATAGTGAGGTTTTCTCTTCGATTGTTAGGCATACACCCATTCGAGTTCTTTTATCTTTAGTTGTGCAATTTGATCTAGAACTTGAACAAATGGATGTAACTACAGCCTCCTTGCATGGAACCTTGGATGAAAACATTTATATGAAGCAACCTCCAGGTTTTGAACAAGTTGGAAAAGAAAATATGGTTTGCCATTTGCAAAAATCTATATATGGCCTTAAGTAGTCTTCTAGACAGTGGAATAAATGTTCTGATAGTTTTATTGCTTCTAAAGGCTTCTAGACAGTGGCCTTAAGTAGTCTTCTAGACAGTGAAATCGACTATAATGAAAGGATTTCTCTCTGATTCACAGTGGATGTAGACTTCCATAGTCAAACCACTATAATTACTCGTGTCCTCTTTTTTCTTCTCTTAACTTCATTGTTACTTGTTCTATTATTTTTTCTACAATTCGTCAAGTATCTATGAACTTTATATATCTAGCATTGAAACATTTGTTTTGACTTTTCTAGTTCATGAATACAAGTACGTGTGGTTGTTTACTAGCTAATTAAAGTTTACATTGGTAGTAGGTAAATTTAGGTAAAAAAAATTGGTGGGAGATAATTTCACATCTTTGACTTGATAAATCGTGTTAGTTCAAGAGATTTTATGAACTTATTTAGTTTATTTGCATGAAATAGAGCATTGGGAGCATCCCAAAGCTAATTTATGGGGCCAAAACGAATCAATTTTGGATATTATTTGAGCAATGGAACTTCAAAGAGGTGAAAAAACCAAAATGCTCCCGTGCAAGACATCTCAATGCTTTGTTTGTTGCTCCCAACAGTACCGCGACGCTTGCTCTCTGTATTGCAACATTGTCAAGCATCGATTCGTAGCTTGCAATATTTCTTGATCTCGGTTTAAAGTATTGTGACGCTGCCTAGAAGTGATGATACACTTCCTCCTCAACTTTTTGGGCTTCTTCTTCCTATCTTTTCATGCCTTAGCCTCGATTTGCACTCCTAATGCTCTATTTTTGTGCACCTTAATTGCTTCAAAACTCTCAATTCTCATTTCATAGCTCAGTCCCTGTACGGACGCTAATAAATGACATGAAAGCATACAAATTAAAGCATAAAACTAACTCAAATACAAATTAAAGCATACACTTATTGAGTGGTATCAATAGAACCTACCACCCTGTCTTTTA

mRNA sequence

CGTCGTACAAAACCCACACCCGAATGGAACCCACAGTATGCAGAATGGAACCTAAGAGGAACCACGACACCCCACGACACCCTTACCCGGATGGAACTCAAGAGGCAGACGGACCGATCTTTGGCCGCTCCAACCATAGGCAAGGCTAAGCGAGAGGGACGCGTGGAGGGGCGCGTCGGGGTGAACAATCAGCGAGAGGGCATCGTCAGGATGAACGGTAGGCGAGAGGAATGAGTGAACGGCCAGCTGAGGCGCGAACGACCGGTTGAAGCGCGACAGACTGCGATTGAGGATGCGAGGGACTGCTATTGAGATGCCTGCGAGGGACTGCGGCGGCAAGATATTGAAAAGAAGCAGACTGCCTTTCTTTCCAATTCAATTTTCAACTTTTCTAGATCTTGAAGAGTTTGATGGTGATTCAGTGGCTATGGGCAACAAACAGAGCTGTGAAATTAAAGCATCAGATCCATTAGATTTCACTTGGATGATGGAGCTCAAAAGAGCCAATTTAAGCTACAAGTCTGAAGATGGAAATCTGGAAAGTGTTATATCATTTGAAGCAAATATCATCTCTAAGGAGGTTAATAAATCTACTCAACTCTGGCACCAACGACTTGCTCACATCAGTCAGAAGGGCCTAAACTCATTGTTCCAACAAGGCCCTAATTGGGAAGCACAAATCTACAAAGTTGACATTTTGTGATCAATGCGTTTTGGGCAAGGCAACTCGACATCCCTTCAACAAAAGCCAAATGAAATCACAGGAGCATTGGGAGCATCCCAAAGCTAATTTATGGGGCCAAAACGAATCAATTTTGGATATTATTTGAGCAATGGAACTTCAAAGAGGTGAAAAAACCAAAATGCTCCCGTGCAAGACATCTCAATGCTTTGTTTGTTGCTCCCAACAGTACCGCGACGCTTGCTCTCTGTATTGCAACATTGTCAAGCATCGATTCGTAGCTTGCAATATTTCTTGATCTCGGTTTAAAGTATTGTGACGCTGCCTAGAAGTGATGATACACTTCCTCCTCAACTTTTTGGGCTTCTTCTTCCTATCTTTTCATGCCTTAGCCTCGATTTGCACTCCTAATGCTCTATTTTTGTGCACCTTAATTGCTTCAAAACTCTCAATTCTCATTTCATAGCTCAGTCCCTGTACGGACGCTAATAAATGACATGAAAGCATACAAATTAAAGCATAAAACTAACTCAAATACAAATTAAAGCATACACTTATTGAGTGGTATCAATAGAACCTACCACCCTGTCTTTTA

Coding sequence (CDS)

ATGCGAGGGACTGCTATTGAGATGCCTGCGAGGGACTGCGGCGGCAAGATATTGAAAAGAAGCAGACTGCCTTTCTTTCCAATTCAATTTTCAACTTTTCTAGATCTTGAAGAGTTTGATGGTGATTCAGTGGCTATGGGCAACAAACAGAGCTGTGAAATTAAAGCATCAGATCCATTAGATTTCACTTGGATGATGGAGCTCAAAAGAGCCAATTTAAGCTACAAGTCTGAAGATGGAAATCTGGAAAGTGTTATATCATTTGAAGCAAATATCATCTCTAAGGAGGTTAATAAATCTACTCAACTCTGGCACCAACGACTTGCTCACATCAGTCAGAAGGGCCTAAACTCATTGTTCCAACAAGGCCCTAATTGGGAAGCACAAATCTACAAAGTTGACATTTTGTGA

Protein sequence

MRGTAIEMPARDCGGKILKRSRLPFFPIQFSTFLDLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAHISQKGLNSLFQQGPNWEAQIYKVDIL
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G008220.1Lsi05G008220.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 85..123
score: 2.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None