Lsi05G005980 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G005980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 7403991 .. 7404679 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGATTGCCCTTCAAAGAGAACTCACCAACACTAAAGCTAGCAGTTTGTGACTTCTATGTCCAACAATTTGGTATGCTTCCAAGTTCCAATTACTTATGTTCAACTTTTTCTGAGGACCTGCCCTTCTACTTGATAGTATCAGATCCTGCCCTCCAAAGGTCTAAAACAGGGTCGTCACTCTGCATTGCCTTGGTTTTCAAATGGTCATATGTAGTAAGCAGTTATAATTTAAGTTTTATGTAGTTTGGTAAATAAGTATCCCTAGAGAATACTTGTGACAGTTTTGACCTCCCCCATCTTCTCGAGAGGCTGAGAAAAGTAACTGGCAATTGTCGGTAGCGGGATTCCTGTGGAAGATTCATTGCGGGATAGATATCATTCTCGTTGGTTAAGATTTTATTAGCAAACATTTTTATTCCCAGATTGGTAGGAATTCATTGTAATAATGTTCTCAGGCTCAGCTTGAGTGATTAATCTGCCTCTTTTGGACGTGTGGCTGTTGATGCATGTAATATTGTGCTGTCTGTGATCTGCCTAGTAAAATTTGTAGGGTGATAGAATTCAGGGATGGAAATGTGAAGCGGGAGAACATGATGTTGGGAATAGGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAATAGGTGGACTATATTTTAACCCTGTGTTGTGGGTAA

mRNA sequence

ATGCTTTGTGACTTCTATGTCCAACAATTTGGTATGCTTCCAAGTTCCAATTACTTATGTTCAACTTTTTCTGAGGACCTGCCCTTCTACTTGATAGTATCAGATCCTGCCCTCCAAAGGTCTAAAACAGGGTCGTCACTCTGCATTGCCTTGGTTTTCAAATGGTCATATGTAGTGGACTATATTTTAACCCTGTGTTGTGGGTAA

Coding sequence (CDS)

ATGCTTTGTGACTTCTATGTCCAACAATTTGGTATGCTTCCAAGTTCCAATTACTTATGTTCAACTTTTTCTGAGGACCTGCCCTTCTACTTGATAGTATCAGATCCTGCCCTCCAAAGGTCTAAAACAGGGTCGTCACTCTGCATTGCCTTGGTTTTCAAATGGTCATATGTAGTGGACTATATTTTAACCCTGTGTTGTGGGTAA

Protein sequence

MLCDFYVQQFGMLPSSNYLCSTFSEDLPFYLIVSDPALQRSKTGSSLCIALVFKWSYVVDYILTLCCG
Homology
[Close]
BLAST of Lsi05G005980 vs. TrEMBL
Match: A0A0A0L2E6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077640 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-09
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 5  FYVQQFGMLPSSNYLCSTFSEDLPFYLIVSDPALQRSKTGSSLCIALVFK 55
          FY QQFG L SS+ L STFSED+PFYL VSDPAL RSKT  SLCIAL  K
Sbjct: 18 FYSQQFGKLLSSDSLPSTFSEDMPFYLTVSDPALGRSKTRLSLCIALAEK 67

[Close]
BLAST of Lsi05G005980 vs. NCBI nr
Match: gi|700200997|gb|KGN56130.1| (hypothetical protein Csa_3G077640 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-09
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 1 

Query: 5  FYVQQFGMLPSSNYLCSTFSEDLPFYLIVSDPALQRSKTGSSLCIALVFK 55
          FY QQFG L SS+ L STFSED+PFYL VSDPAL RSKT  SLCIAL  K
Sbjct: 18 FYSQQFGKLLSSDSLPSTFSEDMPFYLTVSDPALGRSKTRLSLCIALAEK 67

The following BLAST results are available for this feature:
BLAST of Lsi05G005980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G005980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2E6_CUCSA1.5e-0974.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077640 PE=4 SV=1[more]
BLAST of Lsi05G005980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G005980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200997|gb|KGN56130.1|2.2e-0974.00hypothetical protein Csa_3G077640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G005980.1Lsi05G005980.1mRNA