Lsi05G005200 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G005200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA-binding domain CCCH-type zinc finger protein
Locationchr05 : 6514040 .. 6519507 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTTTCAAATTCAAATCAGTCAATTCGAAAGCAAAAAGAACAAATAAATGCATAAAAAAGATGTAAGTGAATTTTTATTTTCATCTTTTTAAATTTGAGTGCTTTTTCATTGTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTGTTGATCTAAATTTCCCAGATTTGATACTTCTTTTCTGTTCTTGTTTTGAATTCAAAGTTCACTTTTTGAAGATTTTTTTCGGTTTAATCCAATCACCATAATGTTTTTTGAAATGGGGTTTTGAAAAGTTTGCTCCTTTTTTTTGAATTCAAAGTTCCCTTTTTGAAGTTTTTTTTTTTTTTGGTTTAATTCAATTATCATAATGTTTTTTGAAATGGGTTTTTCAAAAGTTTGCTTCTTTTTTTTTCTTTTTTTTTTCTTTATTTTTAATTTTGAATGTTTTTTTTTTCTTTACATGGAAATAACATAAATTTTTTAAGAAACAAATTATGGAATGTGAGAATGATTTTTGCCATGTTTGATTCAATTTGTTATCCTGTGTCTTCCCTTTTATTCCTTTCCAATTTTTACTTCCATTTTTATCTTGAGTTTTTTTTTTTTTTTCTTTTCCATAAATGCATAATGGAGTTATAAATTTAAACTTTGGCCTCCGGTTTCATTCTCTGAATTTGTATGAATTTTGAAATTTGAACTTTGGCTTGGAGAATTTTGTAGACTTGAAATGGCATAATAATAATTCACTTACATTATTACAATATTATGTTTGATTATAGTGTTGAAATGCATATGGAGTTTTCGGAATACACAAGAGTTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTCAAGAAGATCATTGGTTTCTTACTTCTCCATGATCATGGTGATCAAGAAATGGCTAGGTTAGCACTAGGACCTGATAGCCATATCCAAGAAGTTGTTATGCTAGCCAAGACCGAGCTGCATCAACTACGATCGATGCCGTCTCCGGTGTCACCACTGTCCCCGTCCCCGTCCCCGTCTCAGGGAGGTTTCATTCCATTCTCCATTAGAACCAGGCAGTTTTCAACTTCCCCTCCAAATTGGGAGCAACAACAGCTTACTAACAAACCAACTCCTGATTACTTATCATTAGGCTACCCTGATTCTATGTATGAATTACAAAATCCAGCTCAATTCTTTTGTTTAGATGACCATATCGAACCGTCGAACTCGGGTCTCTCTAGCTTTGATTGTAGCTATGCTGAAAATGATCTCAACAGCTTTAGTACTAGGAACACCCGTCATTACTCGAATGTGCCGGAGTTTCAGCCTAGGACATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAATAGTTGTAGGTATCTTCATAGCAACCTCGTGCCTGGGAGCCTTTCGCAGATGTATAATACCCATTCTAATGTCAATGATGATCATGTTTTCCAACCCGGTTCGCTCGAGAGGTTGGAGTTTGAAATTGTTGAGCTTCTTAAATCAAGAAGAGGCAGTCCTATTTCAATTGCTTCACTACCAATGATTTATTATGAAAAGTATGGAAAAGTTCTCCAAGCTGAAGGATACCTAACTGAGAGCCAGAGGCATGGTAAATCAGGTTTTAGCTTGACGAAGCTCCTCACTCGATTGAAGACCAGCATTCAAGTCATCGACAGGTCGGTTTTGGTTTCGGTTTCGAATTTAAGCTTTTGAATTTTACTACTGACATGTTTATAATGTCATGTCAGGCCTCATGGACAGCATGCAGTCATTTTGGCAGAAGATGCTCCAAAATTCATGGACTATAGGAAGGATAAGAATGACCCCGGTCCGATCGTTAGTAGCGCACGACAGATATATATGACATTTCCAGCTGACAGCACCTTCACAGAAGATGACGTTTCTGATTACTTCAGGCAAATGCTAAATATGCTTGTGTTTATTGGCATTGCATTGCATTGTCTTGGCTTATTCCTGTTTCAATTTGCATTTATCTCACTTTGTTTGTGTGTGATTGTAGTGTCCACTATGGACTGGTTGAAGATGTAAGAATACCTTGCCAACAAAGAAGGATGTTCGGGTTTGTGACGTTTCACAGCATCGAGACTGTGAAACTAATCTTGTCCGATGACAGCGAGCATTTAATTTGCGGGGCTCGGGTTCTCGTGAAGCCTTATAGAGAAAAGTCTAAGCTATTGGAAAGGTTTACTTCCTACCTAATTCCATTCCTCTGCTTATTCCATCTGCATTGCCTTCAAACTTCTTAATGGTTTCATTTTGATTCAGGAAGTACCATGAAAGAATTGAACAGCAACAGCAAGATTATTTTTCCTCACACTATAACAACCTCGAATCCGAGCAGCTTCACTCGAGTAAGTAGGAGAGATCGTATTTGTTTCTTGTCTCAGTTTATTCATCATATCCATTTGTAACACAAATCATTCTAGTTCCAAGAGGCTATGATTTTTCCCCCACAATGCTGAGGCTAAGGATGGAAGAACAGCAGCAGCAACAACAACAACAGCACGCACTCGAGAGGAGCCTTTCCGAGATGACCTTAATTCAGAAATCCGTCGGGAATCAGCCTTACTTTAGCTATCAGATGAATGAACTGAAACTTCCAGTTCCAGAAGGTTGATGATGATAAATAAGCTTTTTTGTTCTCTATATGTTTTCAATTCCTCTTGTTTTAATAAATCTTAAAATGTATTTGACTTCACCAGCTACAGAAAGGTTTGATCATCTGATGGATATTCTGAATGTTCTGAATAGCGGCTCTGGCTCGAGCTCGAGCTCGAGCTCAATAACCGATGATAACAAGCAACCCCGAAACGTGACGGATTGGAATCACATCGAACTCAACCTCGAGAGGTAATAACAAAAACATATACATGTGTTTTGATGGTGAAATGGCGATGATTTTGGTAATTTTCTTTGTTTTATTGATGACAGTGAAGGATACAATCTTCCAGAGTCCATTTGAATCTTCAACAGGAAACAACAACACATAGGAAGTGATAGAGATACATCCATTAAACATAGGATTGTCAAATCAGCTTTTTTACATATAGAAGAGGAAGGGGAAAACGGAAAACGGAAACGAAAAACAAATGAAAAATGAAAAACAACGGATTTTGATTCAGAGACAATTTATCTCTACCATTGTCATTTTGTTCTTATTTCGGTCCCGAGTATATAGAGTCGTCGTCGTGCTTATAATAAAATGTAATGCACAAATCTTACATGTAAGAAGATTCTAAGGTTTCTTTCTCTTTTCTTTTTTTTTTT

mRNA sequence

AAAGTTTTCAAATTCAAATCAGTCAATTCGAAAGCAAAAAGAACAAATAAATGCATAAAAAAGATTGTTGAAATGCATATGGAGTTTTCGGAATACACAAGAGTTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTCAAGAAGATCATTGGTTTCTTACTTCTCCATGATCATGGTGATCAAGAAATGGCTAGGTTAGCACTAGGACCTGATAGCCATATCCAAGAAGTTGTTATGCTAGCCAAGACCGAGCTGCATCAACTACGATCGATGCCGTCTCCGGTGTCACCACTGTCCCCGTCCCCGTCCCCGTCTCAGGGAGGTTTCATTCCATTCTCCATTAGAACCAGGCAGTTTTCAACTTCCCCTCCAAATTGGGAGCAACAACAGCTTACTAACAAACCAACTCCTGATTACTTATCATTAGGCTACCCTGATTCTATGTATGAATTACAAAATCCAGCTCAATTCTTTTGTTTAGATGACCATATCGAACCGTCGAACTCGGGTCTCTCTAGCTTTGATTGTAGCTATGCTGAAAATGATCTCAACAGCTTTAGTACTAGGAACACCCGTCATTACTCGAATGTGCCGGAGTTTCAGCCTAGGACATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAATAGTTGTAGGTATCTTCATAGCAACCTCGTGCCTGGGAGCCTTTCGCAGATGTATAATACCCATTCTAATGTCAATGATGATCATGTTTTCCAACCCGGTTCGCTCGAGAGGTTGGAGTTTGAAATTGTTGAGCTTCTTAAATCAAGAAGAGGCAGTCCTATTTCAATTGCTTCACTACCAATGATTTATTATGAAAAGTATGGAAAAGTTCTCCAAGCTGAAGGATACCTAACTGAGAGCCAGAGGCATGGTAAATCAGGTTTTAGCTTGACGAAGCTCCTCACTCGATTGAAGACCAGCATTCAAGTCATCGACAGGCCTCATGGACAGCATGCAGTCATTTTGGCAGAAGATGCTCCAAAATTCATGGACTATAGGAAGGATAAGAATGACCCCGGTCCGATCGCAAATGCTAAATATGCTTGTGTTTATTGGCATTGCATTGCATTGTCTTGGCTTATTCCTGTTTCAATTTGCATTTATCTCACTTTGTTTGTGTGTGATTGTAGTGTCCACTATGGACTGGTTGAAGATGTAAGAATACCTTGCCAACAAAGAAGGATGTTCGGGTTTGTGACGTTTCACAGCATCGAGACTGTGAAACTAATCTTGTCCGATGACAGCGAGCATTTAATTTGCGGGGCTCGGGTTCTCGTGAAGCCTTATAGAGAAAAGTCTAAGCTATTGGAAAGGAAGTACCATGAAAGAATTGAACAGCAACAGCAAGATTATTTTTCCTCACACTATAACAACCTCGAATCCGAGCAGCTTCACTCGATTCCAAGAGGCTATGATTTTTCCCCCACAATGCTGAGGCTAAGGATGGAAGAACAGCAGCAGCAACAACAACAACAGCACGCACTCGAGAGGAGCCTTTCCGAGATGACCTTAATTCAGAAATCCGTCGGGAATCAGCCTTACTTTAGCTATCAGATGAATGAACTGAAACTTCCAGTTCCAGAAGCTACAGAAAGGTTTGATCATCTGATGGATATTCTGAATGTTCTGAATAGCGGCTCTGGCTCGAGCTCGAGCTCGAGCTCAATAACCGATGATAACAAGCAACCCCGAAACGTGACGGATTGGAATCACATCGAACTCAACCTCGAGAGTGAAGGATACAATCTTCCAGAGTCCATTTGAATCTTCAACAGGAAACAACAACACATAGGAAGTGATAGAGATACATCCATTAAACATAGGATTGTCAAATCAGCTTTTTTACATATAGAAGAGGAAGGGGAAAACGGAAAACGGAAACGAAAAACAAATGAAAAATGAAAAACAACGGATTTTGATTCAGAGACAATTTATCTCTACCATTGTCATTTTGTTCTTATTTCGGTCCCGAGTATATAGAGTCGTCGTCGTGCTTATAATAAAATGTAATGCACAAATCTTACATGTAAGAAGATTCTAAGGTTTCTTTCTCTTTTCTTTTTTTTTTT

Coding sequence (CDS)

ATGCATATGGAGTTTTCGGAATACACAAGAGTTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTCAAGAAGATCATTGGTTTCTTACTTCTCCATGATCATGGTGATCAAGAAATGGCTAGGTTAGCACTAGGACCTGATAGCCATATCCAAGAAGTTGTTATGCTAGCCAAGACCGAGCTGCATCAACTACGATCGATGCCGTCTCCGGTGTCACCACTGTCCCCGTCCCCGTCCCCGTCTCAGGGAGGTTTCATTCCATTCTCCATTAGAACCAGGCAGTTTTCAACTTCCCCTCCAAATTGGGAGCAACAACAGCTTACTAACAAACCAACTCCTGATTACTTATCATTAGGCTACCCTGATTCTATGTATGAATTACAAAATCCAGCTCAATTCTTTTGTTTAGATGACCATATCGAACCGTCGAACTCGGGTCTCTCTAGCTTTGATTGTAGCTATGCTGAAAATGATCTCAACAGCTTTAGTACTAGGAACACCCGTCATTACTCGAATGTGCCGGAGTTTCAGCCTAGGACATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAATAGTTGTAGGTATCTTCATAGCAACCTCGTGCCTGGGAGCCTTTCGCAGATGTATAATACCCATTCTAATGTCAATGATGATCATGTTTTCCAACCCGGTTCGCTCGAGAGGTTGGAGTTTGAAATTGTTGAGCTTCTTAAATCAAGAAGAGGCAGTCCTATTTCAATTGCTTCACTACCAATGATTTATTATGAAAAGTATGGAAAAGTTCTCCAAGCTGAAGGATACCTAACTGAGAGCCAGAGGCATGGTAAATCAGGTTTTAGCTTGACGAAGCTCCTCACTCGATTGAAGACCAGCATTCAAGTCATCGACAGGCCTCATGGACAGCATGCAGTCATTTTGGCAGAAGATGCTCCAAAATTCATGGACTATAGGAAGGATAAGAATGACCCCGGTCCGATCGCAAATGCTAAATATGCTTGTGTTTATTGGCATTGCATTGCATTGTCTTGGCTTATTCCTGTTTCAATTTGCATTTATCTCACTTTGTTTGTGTGTGATTGTAGTGTCCACTATGGACTGGTTGAAGATGTAAGAATACCTTGCCAACAAAGAAGGATGTTCGGGTTTGTGACGTTTCACAGCATCGAGACTGTGAAACTAATCTTGTCCGATGACAGCGAGCATTTAATTTGCGGGGCTCGGGTTCTCGTGAAGCCTTATAGAGAAAAGTCTAAGCTATTGGAAAGGAAGTACCATGAAAGAATTGAACAGCAACAGCAAGATTATTTTTCCTCACACTATAACAACCTCGAATCCGAGCAGCTTCACTCGATTCCAAGAGGCTATGATTTTTCCCCCACAATGCTGAGGCTAAGGATGGAAGAACAGCAGCAGCAACAACAACAACAGCACGCACTCGAGAGGAGCCTTTCCGAGATGACCTTAATTCAGAAATCCGTCGGGAATCAGCCTTACTTTAGCTATCAGATGAATGAACTGAAACTTCCAGTTCCAGAAGCTACAGAAAGGTTTGATCATCTGATGGATATTCTGAATGTTCTGAATAGCGGCTCTGGCTCGAGCTCGAGCTCGAGCTCAATAACCGATGATAACAAGCAACCCCGAAACGTGACGGATTGGAATCACATCGAACTCAACCTCGAGAGTGAAGGATACAATCTTCCAGAGTCCATTTGA

Protein sequence

MHMEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTELHQLRSMPSPVSPLSPSPSPSQGGFIPFSIRTRQFSTSPPNWEQQQLTNKPTPDYLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTRHYSNVPEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSICIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQQQQQQHALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPEATERFDHLMDILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNLESEGYNLPESI
Homology
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BLAST of Lsi05G005200 vs. Swiss-Prot
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 8.5e-94
Identity = 236/588 (40.14%), Postives = 328/588 (55.78%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLL-HDHGDQEMARLALGPDSHIQEVVMLAKT 62
           M F+E   VV  RI +++PEN  KI G+LLL  ++G+++M RLA  PDS +  V+   K 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 63  EL----HQLRSMPSPVSPLSPSPSPSQGGFI---PFSIRTRQFSTSPPN----WEQQQLT 122
           EL    H   S PS        P+P  G F    P S+     S SPP     WE     
Sbjct: 61  ELARNSHHYHSPPS-----DHIPTPKFGSFTGSSPLSV-----SVSPPMKTGFWENST-- 120

Query: 123 NKPTPDYLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTR 182
                          M  LQN  QF   +D +         F   +   +      R +R
Sbjct: 121 --------------EMDTLQNNLQFLNFEDPLTSPE-----FSNGFFSQERQCLPLRTSR 180

Query: 183 HYSNVPEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPG--SLSQMYNTHSNVNDD-HVFQP 242
              ++PEF  + CHY+NKGFCKHGN+CRY H  ++P   S +QM+N ++N++D+ HV  P
Sbjct: 181 RSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSP 240

Query: 243 GSLERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTK 302
            SLE+LE EI+ELLK RRG+PISIASLPM+YYEKYG+ LQAEGYLTESQRHGK+G+SLTK
Sbjct: 241 VSLEKLEGEIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTK 300

Query: 303 LLTRLKTSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSW 362
           LL RLK +I+++DRPHGQH+VILAEDA KF++Y  ++N+ G I  A    +Y    A S 
Sbjct: 301 LLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAIL-AGSRQIYLTFPAESS 360

Query: 363 LIPVSICIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLI 422
                + IY T         YG VEDVRIPCQQ+RM+GFVTF S ETVK IL+  + H I
Sbjct: 361 FTEHDVSIYFT--------SYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFI 420

Query: 423 CGARVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLR 482
           C ARVLVKPYREKS+    +Y +  +      + S +   + E ++++P     S  M +
Sbjct: 421 CNARVLVKPYREKSR--SSRYLDNYKPLHGMRYGSKFIERDIE-MNTLPPRVSESSRMRK 480

Query: 483 LRMEEQQQQQQQQHALERSLSEMTLIQKSVGNQPYFSYQMNELKLPV-PEATERFDHLMD 542
             + E +Q      ++ +SL           N  Y  +  ++ KL    E  E+ + L  
Sbjct: 481 PFLSEPEQ------SVSKSLPT---------NYSYLGFSSDDFKLTSNAEQEEQAERLSY 522

Query: 543 ILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNLESEGYNLPES 575
           +L+ LN+     + +++  D++++        H E +L+S+  NLPES
Sbjct: 541 LLDYLNTEDNVMNITTNYRDNDRR-------THCE-SLDSQVLNLPES 522

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BLAST of Lsi05G005200 vs. Swiss-Prot
Match: C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 229.9 bits (585), Expect = 6.8e-59
Identity = 156/406 (38.42%), Postives = 220/406 (54.19%), Query Frame = 1 

Query: 181 RTCHYYNKGFCKHGNSCRYLHSNLVPGSLS-QMYNTHSNVNDDHVFQPGSLERLEFEIVE 240
           R CHY++KG CK+G +C Y H  +   +L+    N     +      PGSLE LE EI E
Sbjct: 264 RPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITE 323

Query: 241 LLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVI 300
           LL SRRG P+SIASLP +Y EKYGK LQA+GYLTESQRHGK+G+SLT+LL+RL   I+VI
Sbjct: 324 LLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVI 383

Query: 301 DRPHGQHAVILAEDAPKFMDYR----KDKNDPGPIANAKYACVYWHCIALSWLIPVSICI 360
           +RPHGQH+V+LAEDA K+MD+R        D G +  + +  +Y    A S      +  
Sbjct: 384 ERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQ-IYLTFPAESTFAEDDVAN 443

Query: 361 YLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVK 420
           Y           YG V DVRIPCQ+RRMFGFV+F S ETV  IL   + H ICG+RVLVK
Sbjct: 444 YFG--------QYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVK 503

Query: 421 PYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQ 480
           PYREKSK ++R               +  +N++S   +  PR ++F   +     +  + 
Sbjct: 504 PYREKSKCVDR---------------TCVDNIKSMVPYCPPRFFEFDQELYTAEYDASRL 563

Query: 481 QQQQQHALERSLSEM----TLIQKSVGNQPYFSYQMNELKLPVP-----EATERFDHL-- 540
            ++Q       L EM      +++     P F+Y    ++   P     + +++ D +  
Sbjct: 564 MRKQLAEKREMLLEMERRRATVRRLESMPPQFAYFDCSIEDASPLHSLQDDSKQLDLMNP 623

Query: 541 ----MDILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNLES 567
                D L ++++     + + +I DD++        N IEL  ES
Sbjct: 624 SLASPDPLEIVSNSQAPPTQAGNIYDDHES-------NQIELLPES 637

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BLAST of Lsi05G005200 vs. Swiss-Prot
Match: C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica GN=Os07g0583300 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-36
Identity = 138/423 (32.62%), Postives = 202/423 (47.75%), Query Frame = 1 

Query: 11  VVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTELHQLRSMP 70
           V+ +R  + +P       G  +L      ++ + A  PD H              LRS+P
Sbjct: 52  VLLNRAREFEPSRAN---GGYILSTSSYPQIRQYAASPDEH--------------LRSLP 111

Query: 71  SPVSPLSPSPSPSQGGFIPFSIRTRQFSTSPPNWEQQQLTNKPTPDY---LSLGYPDSMY 130
           S    L P P    G  +P +    Q  +S  N+   Q   +P  D    L   +P+S+ 
Sbjct: 112 S----LLPPPP---GQELPLAYLRAQRQSSG-NYRGIQAQRRPLIDQTGALQSSFPESI- 171

Query: 131 ELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTRHYSNVPEFQPRTCHY-Y 190
                    CL + ++           S   N  N+       H  +  +   + CH+ +
Sbjct: 172 ---------CLKEELQ---------SLSMPRNSPNA-GRNLVGHPHSSSKSSSKPCHFHF 231

Query: 191 NKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVELLKSRRG 250
            +G+CK G +C++ H     GS+ +++N        H F   SL +L+ EI ELL     
Sbjct: 232 FRGYCKKGVNCQFFH-----GSVPELHNPRQV----HPF--ASLSKLDMEIRELLIGIP- 291

Query: 251 SPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVIDRPHGQH 310
            P+++  LP +Y+EKYGK L+ +G+LTESQ+HG++G SLT LL  L T I+V++R HGQ+
Sbjct: 292 PPVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNT-IRVVEREHGQY 351

Query: 311 AVILAEDA-PKFMD-----YRKDKNDPGPIANAKYACVYWHCIALSWLIPVSICIYLTLF 370
            V+L EDA  K+MD     +  +  D G  +N  Y     H    S      +  Y   F
Sbjct: 352 HVVLVEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVH----SKFTDDDVENYFKQF 404

Query: 371 VCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREK 424
                   G V  VRIP Q++RMFGFV+F   ETV+LILS  + H ICG RVLVK Y EK
Sbjct: 412 --------GPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEK 404

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BLAST of Lsi05G005200 vs. Swiss-Prot
Match: C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-20
Identity = 148/554 (26.71%), Postives = 221/554 (39.89%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFL-------------------LLHDHGDQEMAR 62
           M+  E T+VVF RI  +DP++  KI+GFL                   LLH    +    
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60

Query: 63  LALGPDSH-------------IQEVVMLAKTELHQLRSMPSPVSPLSPSPSPSQGGFIPF 122
           L L P S                   ML++    +  + PSP+S  SPS       + P 
Sbjct: 61  LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPS------SWAPP 120

Query: 123 SIRTRQFSTSPPNWEQQ--------QLTNKPTPDYLSLGYPDSMYELQNPAQFFCLDDHI 182
            + +R  S S    E+            N   P     G    M ELQ   Q   L++  
Sbjct: 121 PVFSRNNSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGG 180

Query: 183 EPSNSGLSSFD---C-SYAENDLNSFSTR--------NTRHYSNVPEFQP--------RT 242
            P+   +  FD   C S    D   FS            R  ++V E           + 
Sbjct: 181 VPAGHQMPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKP 240

Query: 243 CHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVELLK 302
           C YY +G+CK+G++CR++H  L   +  +M                    +E +  + L 
Sbjct: 241 CLYYARGYCKNGSACRFVHGGLPDDAAGKM----------------DPSAVEQQCQDFLI 300

Query: 303 SRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVIDRP 362
             +   ++ A+ P   Y   G +  +    T+             LL + +       R 
Sbjct: 301 RSKSQRLAAAAFP---YSPTGSLPGSPSAATKC----------LSLLLQQQQQQNESQRA 360

Query: 363 HGQHAVILAED-APKFMDY-RKDKNDPGPIANAKYACVYWHCIALSWLIPVSICIYLTLF 422
               A++L  D A KFM   R ++ D   + N     +Y    A S      +  Y ++ 
Sbjct: 361 AAAAALMLGGDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSI- 420

Query: 423 VCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREK 482
                  YG V DVRIP QQ+RMFGFVTF   ETVKLIL+  + H IC ARVLVKPY+EK
Sbjct: 421 -------YGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEK 480

Query: 483 SKLLERKYHERIEQQQQDYFSS--------HYNNLESEQL--HSIPRGYDFSPTMLRLRM 485
            K+ + KY ++ +  ++  FSS          +  +  QL    +      +  +LR ++
Sbjct: 481 GKVPD-KYRKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKL 510

[Close]
BLAST of Lsi05G005200 vs. Swiss-Prot
Match: C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-20
Identity = 98/317 (30.91%), Postives = 140/317 (44.16%), Query Frame = 1 

Query: 181 RTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVEL 240
           + C YY +GFCK+G++CR++H  L               +DD      + E+ + +   L
Sbjct: 232 KPCLYYARGFCKNGSTCRFVHGGL---------------SDDAAMDATTAEQQQCQDFLL 291

Query: 241 -LKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVI 300
             KS+R  P +    P              G L  S        SL      L+   Q  
Sbjct: 292 RSKSQRLGPAAFPFTP-------------TGSLPASPSATSKCLSLL-----LQQQQQHN 351

Query: 301 DRPHGQHAVIL---AEDAPKFMDY-RKDKNDPGPIANAKYACVYWHCIALSWLIPVSICI 360
           D      A ++    ++A KFM   R D+ D   + N     +Y    A S      +  
Sbjct: 352 DNQRAAAAALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSN 411

Query: 361 YLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVK 420
           Y ++        YG V DVRIP QQ+RMFGFVTF   ETVKLIL+  + H IC ARVLVK
Sbjct: 412 YFSI--------YGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVK 471

Query: 421 PYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQ--------LHSIPRGYDFSPTMLR 480
           PY+EK K+ + KY    +QQQ D+       L++             +      +  MLR
Sbjct: 472 PYKEKGKVPD-KYR---KQQQGDFCCMSPTGLDARDPFDFHQLGARMLQHSNSANELMLR 503

Query: 481 LRMEEQQQQQQQQHALE 485
            ++EEQQQ  + Q A++
Sbjct: 532 RKLEEQQQAAELQQAID 503

[Close]
BLAST of Lsi05G005200 vs. TrEMBL
Match: A0A0A0L4W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G061520 PE=4 SV=1)

HSP 1 Score: 896.0 bits (2314), Expect = 2.5e-257
Identity = 466/576 (80.90%), Postives = 501/576 (86.98%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           MEFS +TR VFHRI++IDP+NV KIIGFLLLHD+GDQEMARLAL  +SHI++VVMLAKTE
Sbjct: 36  MEFSAHTRTVFHRINQIDPDNVMKIIGFLLLHDNGDQEMARLALANESHIEKVVMLAKTE 95

Query: 63  LHQLRSMPSPVSPLSPSPSPSQGGFIPFSIRTRQFSTSPPNWEQQQLTNKPTPDYLSLGY 122
           LHQLRSMP PVSPL+              IR RQ STSPP WEQQQLTNK TPDY+SLGY
Sbjct: 96  LHQLRSMPVPVSPLA--------------IRNRQPSTSPPGWEQQQLTNKHTPDYISLGY 155

Query: 123 PDS-MYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTRHYSNVPEFQPR 182
            DS MY+LQN A  FCL+DH+E SNSGLSSFDCSYA+N LNSFSTRNTRHYSNVP+FQPR
Sbjct: 156 HDSSMYDLQNAANLFCLEDHMEQSNSGLSSFDCSYADNMLNSFSTRNTRHYSNVPDFQPR 215

Query: 183 TCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVELL 242
           TCHYYNKGFCKHGNSCRYLHSNLVPGSLS +YNT+SNVNDDHVF+PGSLERLEFEIVELL
Sbjct: 216 TCHYYNKGFCKHGNSCRYLHSNLVPGSLSHLYNTNSNVNDDHVFRPGSLERLEFEIVELL 275

Query: 243 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVIDR 302
           KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLK SIQVIDR
Sbjct: 276 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKNSIQVIDR 335

Query: 303 PHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSICIYLTLFV 362
           PHGQHAVILAEDAPKFMD+RKD+NDPGPI ++    +Y    A S      +  Y     
Sbjct: 336 PHGQHAVILAEDAPKFMDHRKDRNDPGPIVSSARQ-IYMTFPADSTFTEDDVSDYF---- 395

Query: 363 CDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKS 422
              SVHYG+VEDVRIPCQQRRMFGFVTFHS+ETVKLILSDDSEHLICGARVLVKPYREKS
Sbjct: 396 ---SVHYGMVEDVRIPCQQRRMFGFVTFHSMETVKLILSDDSEHLICGARVLVKPYREKS 455

Query: 423 KLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQQQQQQH 482
           KLLERKY ERIEQQ QDYF+SHYN+LESEQLHSI RGYDF PTMLRLRMEEQQQQQ++  
Sbjct: 456 KLLERKYQERIEQQHQDYFASHYNSLESEQLHSIGRGYDFPPTMLRLRMEEQQQQQRE-- 515

Query: 483 ALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPEATERFDHLMDILNVLNSGSGSSSSS 542
            LERSLSEMTL+QKSV NQPYFSYQMNELK+PVPEATE F+HLMDILNVLNSGS SSSSS
Sbjct: 516 -LERSLSEMTLVQKSVVNQPYFSYQMNELKVPVPEATESFEHLMDILNVLNSGSNSSSSS 575

Query: 543 SSITDDNKQ---PRNVTDWNHIELNLESEGYNLPES 575
              TDDNKQ   P+NVTDWNH+ELNLESEGYNLPES
Sbjct: 576 ---TDDNKQQPHPQNVTDWNHMELNLESEGYNLPES 583

[Close]
BLAST of Lsi05G005200 vs. TrEMBL
Match: M5X0G7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019338mg PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 5.1e-138
Identity = 293/584 (50.17%), Postives = 389/584 (66.61%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           M+FSEYT  V+ RI K++P+N  KIIG+LLL D+G+QEMARLA+ P+  I +V++ AKTE
Sbjct: 1   MDFSEYTNAVYSRIQKLEPDNATKIIGYLLLQDYGEQEMARLAMAPEHLIHQVIVKAKTE 60

Query: 63  LHQLRSMPSPVSPLSPSPSPSQGGFIPF-SIRTRQFSTS-----PPNWEQQQLTNKPTPD 122
           L QL +  S  SP+SPS +P  G F P+  + +R FS+      P  +   QL  K +PD
Sbjct: 61  LQQLAAK-SVASPISPSLNPVTGAFAPYLPVSSRPFSSPAAIRVPTAFWDAQLVAKQSPD 120

Query: 123 YLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAEN-DLNSFSTRNTRHYSNV 182
           ++ LGYPDS+ ELQN AQF  L+D IEP NSG+S F   Y  + ++++ S R  R +S+V
Sbjct: 121 FMPLGYPDSIAELQNQAQFLSLEDQIEPLNSGISGFSNDYYRDAEIDNLSVRTGRRFSSV 180

Query: 183 PEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEF 242
            EF  + CHY+NKGFCKHG+SCRY H  ++P S SQMY     +NDDHV  PGSLE+LE+
Sbjct: 181 TEFPVKICHYFNKGFCKHGSSCRYYHGQVIPESFSQMYGNDC-INDDHVISPGSLEKLEW 240

Query: 243 EIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTS 302
           EI ELL+SRRG PISIASLPM+YY+K+GK LQAEGYLTESQRHGK+G+SLTKLL RL +S
Sbjct: 241 EITELLRSRRGIPISIASLPMMYYDKFGKSLQAEGYLTESQRHGKAGYSLTKLLARLGSS 300

Query: 303 IQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSICI 362
           I++IDRPHGQHAVILAED+PK+ D+R +K DPGPI +     +Y    A S      +  
Sbjct: 301 IRLIDRPHGQHAVILAEDSPKYADHRNEKGDPGPIVSGSRQ-IYLTFPAESTFSEDDVSN 360

Query: 363 YLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVK 422
           Y + F        G VEDVRIPCQQ+RMFGFVTF   +TVK+IL+  + H +CG+RVLVK
Sbjct: 361 YFSTF--------GPVEDVRIPCQQKRMFGFVTFVHADTVKMILAKGNPHYVCGSRVLVK 420

Query: 423 PYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQ 482
           PYREKSKL++RK+ ER++     Y S H+ ++ES+  +S+  G D S  +LR ++ E+Q+
Sbjct: 421 PYREKSKLVDRKHQERMDPAA--YLSQHHADMESD-FYSMSVGCDNS-RLLRKKLVEEQE 480

Query: 483 QQQQQHALER-SLSEMTLIQKSVGNQPYFSYQMNELKLPVPE----ATERFDHLMDILNV 542
              +   LER  L+ +   +K V N P+ SY M+  K         + E F++L D   V
Sbjct: 481 YAIE---LERMRLAGLHFARKPVANHPHSSYFMDGHKFSEDNFNFPSAECFNYLFD---V 540

Query: 543 LNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNLESEGYNLPES 575
           LNSGS         T D+K     TD N+ +   ES+G NLP+S
Sbjct: 541 LNSGS---------TSDDKHKH--TDTNYTD--HESQGLNLPDS 550

[Close]
BLAST of Lsi05G005200 vs. TrEMBL
Match: A0A067KT06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00999 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 4.3e-137
Identity = 295/594 (49.66%), Postives = 384/594 (64.65%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           M+FS+ TR++ +RISK++PENV KIIG+LL+H  G+QEM  LA+ PD  IQE++  AK E
Sbjct: 1   MDFSDGTRILHNRISKMEPENVTKIIGYLLIHGGGEQEMFNLAMSPDVVIQEIIYKAKAE 60

Query: 63  LHQ--LRSMPSPVSPLSPSPSPSQ--GGFIPFS-IRTRQFSTSPPNWEQQQL----TNKP 122
           L+Q  L+   SP+SP   SP  S+    + PFS + +R    SP  +           K 
Sbjct: 61  LNQFPLKKANSPLSPSLNSPPVSELPSQYTPFSPVSSRSAFLSPAAFRSPSSYWDSPAKH 120

Query: 123 TPDYLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAEND--LNSFSTRNTRH 182
             D++S+GY DS  E+Q   QF  LDD IEP N G S F   Y  +D  L++ S R  R 
Sbjct: 121 NSDFVSMGYMDSASEIQGQTQFLSLDDQIEPVNLGNSGFPSDYFYSDAALSNLSARAGRR 180

Query: 183 YSNVPEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMY-NTHSNVNDDHVFQPGSL 242
           YS++ +F  +TCHY+NKGFCKHG++CRY H     G +S+ +  +  ++NDD VF PGSL
Sbjct: 181 YSSLNDFPVKTCHYFNKGFCKHGSNCRYFH-----GQVSESFPRSFDSINDDQVFSPGSL 240

Query: 243 ERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLT 302
           E+LE EI+ELLKSR+G+P+SIASLPMIYYEKYGKVLQAEGYLTESQRHGK+G+SLTKLL 
Sbjct: 241 EKLELEIIELLKSRKGNPVSIASLPMIYYEKYGKVLQAEGYLTESQRHGKAGYSLTKLLA 300

Query: 303 RLKTSIQVIDR---PHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSW 362
           RLK SI++IDR   PHGQHAVILAED PK+M+ R D+NDPGPI +     +Y    A S 
Sbjct: 301 RLKNSIRLIDRCIIPHGQHAVILAEDVPKYMENRGDRNDPGPIVSGSRQ-IYLTFPAEST 360

Query: 363 LIPVSICIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLI 422
                +  Y   F        G VEDVRIPCQQ+RMFGFVTF S +TVK+IL+  + H +
Sbjct: 361 FTEDDVSNYFNTF--------GPVEDVRIPCQQKRMFGFVTFESADTVKMILAKGNPHFV 420

Query: 423 CGARVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLR 482
           CGARVLVKPYREKSKL++RKY ERIE     +FSS Y ++++E LHS+PRGY+ S  + +
Sbjct: 421 CGARVLVKPYREKSKLVDRKYQERIEHPL--FFSSQYLDMDAE-LHSMPRGYETSRLLRK 480

Query: 483 LRMEEQQQQQQQQHALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPE----ATERFDH 542
             +EEQ+Q  + +    R L+E+ +  K + NQ YF Y MN LK         +TERF +
Sbjct: 481 QLLEEQEQALELE---RRRLAELRIPPKPMTNQSYFGYSMNGLKFSEDNFNLPSTERFSY 540

Query: 543 LMDILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNL---ESEGYNLPES 575
           L+D+LN           S S +DD         + H E N    +S+G NLPES
Sbjct: 541 LLDVLN-----------SGSASDDR--------FRHTETNYADQDSQGLNLPES 555

[Close]
BLAST of Lsi05G005200 vs. TrEMBL
Match: A0A067FGD1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008439mg PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 2.2e-133
Identity = 294/592 (49.66%), Postives = 381/592 (64.36%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           M+FSE TR+VF+RI K+DPENV KIIG+LLL +   QEM  LA+ PD  IQEVV  AK E
Sbjct: 1   MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 60

Query: 63  LHQL--RSMPSPVSPLSPSP-SPSQGGFIPFSIRTRQFSTSP-----PNWEQQQLTNKPT 122
           L QL  +S  SP+SP   SP +     F PFS R      SP     P++   Q+TNK  
Sbjct: 61  LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRP---PVSPAGCRVPSYWDHQVTNKNN 120

Query: 123 PDYLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSF--DCSYAENDLNSFSTRNTRHY 182
            D+++LGY DS+ ELQ+  QF  L+D +E  N G + F  DC Y++  L++   R  R Y
Sbjct: 121 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 180

Query: 183 SNV-PEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHS--NVNDDHVFQPGS 242
            ++  E   +TCHY+NKGFCKHG++CRY H  LV  S +QM+   S    NDDH+F PGS
Sbjct: 181 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHG-LVSESFTQMFGQTSPDGFNDDHLFSPGS 240

Query: 243 LERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLL 302
           LE+LE EI+ELLK+RRG+PISIASLPM+YYEKYGKVLQA GYLTESQRHGK+G+SLTKLL
Sbjct: 241 LEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLL 300

Query: 303 TRLKTSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLI 362
            RLK S+++IDRPHGQHAVILAEDAPK+++ R +++DPGPI       +Y    A S   
Sbjct: 301 ARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQ-IYLTFPAESTFT 360

Query: 363 PVSICIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICG 422
              +  Y           YG V+DVRIPCQQ+RMFGFVTF S +TVK+IL+  + H +CG
Sbjct: 361 EDDVSNYFNT--------YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 420

Query: 423 ARVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLR 482
           ARVLVKPYREKSKL++RKY ER+E     YFS  Y +++SE LHS  RG + S  + +  
Sbjct: 421 ARVLVKPYREKSKLVDRKYQERMESPM--YFSPQYVDMDSE-LHSFSRGCETSRFIRKQL 480

Query: 483 MEEQQQQQQQQHALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPE----ATERFDHLM 542
           +EEQ+Q  + +    R L+E+ L++K + N PYF   M+ LK+        + ER D+L+
Sbjct: 481 LEEQEQAFELE---RRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLI 540

Query: 543 DILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNL---ESEGYNLPES 575
            +LN           + S T D  +        H+E N    ESEG NLP+S
Sbjct: 541 GVLN-----------NGSTTGDRVK--------HVETNYTDQESEGLNLPDS 551

[Close]
BLAST of Lsi05G005200 vs. TrEMBL
Match: V4TYX1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007876mg PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 5.0e-133
Identity = 293/592 (49.49%), Postives = 381/592 (64.36%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           M+FSE TR+VF+RI K+DPENV KIIG+LLL +   QEM  LA+ PD  IQEVV  AK E
Sbjct: 1   MDFSESTRIVFNRIKKLDPENVTKIIGYLLLQE---QEMIHLAMSPDVVIQEVVYKAKAE 60

Query: 63  LHQL--RSMPSPVSPLSPSP-SPSQGGFIPFSIRTRQFSTSP-----PNWEQQQLTNKPT 122
           L QL  +S  SP+SP   SP +     F PFS R      SP     P++   Q+TNK  
Sbjct: 61  LQQLAMKSASSPISPSMNSPVNEVSFQFNPFSSRP---PVSPAGCRVPSYWDHQVTNKNN 120

Query: 123 PDYLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSF--DCSYAENDLNSFSTRNTRHY 182
            D+++LGY DS+ ELQ+  QF  L+D +E  N G + F  DC Y++  L++   R  R Y
Sbjct: 121 SDFVALGYSDSINELQSQTQFLSLEDQMEHVNLGNTGFSSDCYYSDAALSNLGARAGRRY 180

Query: 183 SNV-PEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHS--NVNDDHVFQPGS 242
            ++  E   +TCHY+NKGFCKHG++CRY H  LV  S +QM+   S    NDDH+F PGS
Sbjct: 181 QSLNAELPVKTCHYFNKGFCKHGSNCRYYHG-LVSESFTQMFGQTSPDGFNDDHLFSPGS 240

Query: 243 LERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLL 302
           LE+LE EI+ELLK+RRG+PISIASLPM+YYEKYGKVLQA GYLTESQRHGK+G+SLTKLL
Sbjct: 241 LEKLELEIIELLKARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLL 300

Query: 303 TRLKTSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLI 362
            RLK S+++IDRPHGQHAVILAEDAPK+++ R +++DPGPI       +Y    A S   
Sbjct: 301 ARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQ-IYLTFPAESTFT 360

Query: 363 PVSICIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICG 422
              +  Y           YG V+DVRIPCQQ+RMFGFVTF S +TVK+IL+  + H +CG
Sbjct: 361 EDDVSNYFNT--------YGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCG 420

Query: 423 ARVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLR 482
           ARVLVKPYREKSKL++RKY ER+E     YFS  Y +++S+ LHS  RG + S  + +  
Sbjct: 421 ARVLVKPYREKSKLVDRKYQERMESPM--YFSPQYVDMDSD-LHSFSRGCETSRFIRKQL 480

Query: 483 MEEQQQQQQQQHALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPE----ATERFDHLM 542
           +EEQ+Q  + +    R L+E+ L++K + N PYF   M+ LK+        + ER D+L+
Sbjct: 481 LEEQEQAFELE---RRRLAELQLVRKPMPNPPYFGGYMDGLKISEDRLNFPSAERIDYLI 540

Query: 543 DILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNL---ESEGYNLPES 575
            +LN           + S T D  +        H+E N    ESEG NLP+S
Sbjct: 541 GVLN-----------NGSTTGDRVK--------HVETNYTDQESEGLNLPDS 551

[Close]
BLAST of Lsi05G005200 vs. TAIR10
Match: AT2G05160.1 (AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 345.9 bits (886), Expect = 4.8e-95
Identity = 236/588 (40.14%), Postives = 328/588 (55.78%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLL-HDHGDQEMARLALGPDSHIQEVVMLAKT 62
           M F+E   VV  RI +++PEN  KI G+LLL  ++G+++M RLA  PDS +  V+   K 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 63  EL----HQLRSMPSPVSPLSPSPSPSQGGFI---PFSIRTRQFSTSPPN----WEQQQLT 122
           EL    H   S PS        P+P  G F    P S+     S SPP     WE     
Sbjct: 61  ELARNSHHYHSPPS-----DHIPTPKFGSFTGSSPLSV-----SVSPPMKTGFWENST-- 120

Query: 123 NKPTPDYLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTR 182
                          M  LQN  QF   +D +         F   +   +      R +R
Sbjct: 121 --------------EMDTLQNNLQFLNFEDPLTSPE-----FSNGFFSQERQCLPLRTSR 180

Query: 183 HYSNVPEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPG--SLSQMYNTHSNVNDD-HVFQP 242
              ++PEF  + CHY+NKGFCKHGN+CRY H  ++P   S +QM+N ++N++D+ HV  P
Sbjct: 181 RSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSP 240

Query: 243 GSLERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTK 302
            SLE+LE EI+ELLK RRG+PISIASLPM+YYEKYG+ LQAEGYLTESQRHGK+G+SLTK
Sbjct: 241 VSLEKLEGEIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTK 300

Query: 303 LLTRLKTSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSW 362
           LL RLK +I+++DRPHGQH+VILAEDA KF++Y  ++N+ G I  A    +Y    A S 
Sbjct: 301 LLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAIL-AGSRQIYLTFPAESS 360

Query: 363 LIPVSICIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLI 422
                + IY T         YG VEDVRIPCQQ+RM+GFVTF S ETVK IL+  + H I
Sbjct: 361 FTEHDVSIYFT--------SYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFI 420

Query: 423 CGARVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLR 482
           C ARVLVKPYREKS+    +Y +  +      + S +   + E ++++P     S  M +
Sbjct: 421 CNARVLVKPYREKSR--SSRYLDNYKPLHGMRYGSKFIERDIE-MNTLPPRVSESSRMRK 480

Query: 483 LRMEEQQQQQQQQHALERSLSEMTLIQKSVGNQPYFSYQMNELKLPV-PEATERFDHLMD 542
             + E +Q      ++ +SL           N  Y  +  ++ KL    E  E+ + L  
Sbjct: 481 PFLSEPEQ------SVSKSLPT---------NYSYLGFSSDDFKLTSNAEQEEQAERLSY 522

Query: 543 ILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNLESEGYNLPES 575
           +L+ LN+     + +++  D++++        H E +L+S+  NLPES
Sbjct: 541 LLDYLNTEDNVMNITTNYRDNDRR-------THCE-SLDSQVLNLPES 522

[Close]
BLAST of Lsi05G005200 vs. TAIR10
Match: AT3G52980.1 (AT3G52980.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 283.9 bits (725), Expect = 2.2e-76
Identity = 179/407 (43.98%), Postives = 238/407 (58.48%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLL-HDHGDQEMARLALGPDSHIQEVVMLAKT 62
           M F+E   VV +RI +++PEN  KIIG+LLL  D  D++M RLA  PDS ++ ++   K 
Sbjct: 1   MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60

Query: 63  ELHQLRSMPSPVSPLSPSPSPSQGGFIPFSIRTRQFSTSPPNWEQQQLTNKPTPDYLSLG 122
           EL       +  S  +  PS          I+ R+F +   +  Q  L +   P  LS+G
Sbjct: 61  EL-------AKNSHYNNIPSSDH-------IQIRKFGSLSGSSNQSLLVSASPPSVLSMG 120

Query: 123 YP------DSMYELQNPAQFFC-LDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTRHYSN 182
                   D    L++  Q+F   +D +         F  S+      S S R +R   +
Sbjct: 121 TSFWENTNDMDSSLKDNVQYFLDFEDSVTSPE-----FSTSFFSQKKQSLSLRTSRRSLS 180

Query: 183 VPEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDD-HVFQPGSLERL 242
           +PEF  + CHY+NKGFCKHGN+C                  H+N++D+ HV  PGSLE+L
Sbjct: 181 LPEFPLKICHYFNKGFCKHGNNC------------------HNNLSDEEHVVSPGSLEKL 240

Query: 243 EFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLK 302
           E EI+ELLKSRRG+PISIA LPM+Y+EKYG+ LQAEGYLTESQRHGK+GFSLTKLL RLK
Sbjct: 241 EREIIELLKSRRGAPISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLK 300

Query: 303 TSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSI 362
            +I++IDRPHGQH+VILAED  KF++Y  ++++ G I  A    VY    A S      +
Sbjct: 301 NTIRLIDRPHGQHSVILAEDVSKFVEYTGERSEHGAIL-AGSRQVYLTFPAESSFTEHDV 360

Query: 363 CIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILS 401
             Y +          G VEDVRIPCQQ+RM+GFVTF  +ETVK IL+
Sbjct: 361 SNYFS--------EVGPVEDVRIPCQQKRMYGFVTFVYMETVKRILA 361

[Close]
BLAST of Lsi05G005200 vs. TAIR10
Match: AT3G21100.2 (AT3G21100.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-17
Identity = 68/196 (34.69%), Postives = 109/196 (55.61%), Query Frame = 1 

Query: 367 HYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKSKLLER 426
           ++G V+DVRIP QQ+RMFGFVTF   ETV++IL+  + H IC +RVLVKPY+EK ++LE+
Sbjct: 341 NFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILARGNPHFICDSRVLVKPYKEKGRILEK 400

Query: 427 KYHER-IEQQQQDYFS--SHYNNLESEQL---HSIPRGYDFSPTMLRLRMEEQQQQQ--- 486
           +  ++ ++Q ++  FS  S  + ++S  L   H  PR +  +  M+R + E+   QQ   
Sbjct: 401 RQQQQLLQQMERGNFSPGSSPSGMDSRDLFDSHLAPRMFSNTQEMMRRKAEQADLQQAIE 460

Query: 487 -QQQHALERSLSEMT-------LIQKSVGNQPYFSYQMNELKLPVPEATERFDHLMDILN 546
            Q++  L   L +M            S+G+  +FS ++N+  L   E+T   D + +   
Sbjct: 461 FQRRRFLSLQLPDMDSESFLHHQRSLSIGSPVHFSPRVNQSMLFRSESTS--DEVFE--- 520

[Close]
BLAST of Lsi05G005200 vs. TAIR10
Match: AT5G12440.1 (AT5G12440.1 CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-16
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 

Query: 368 YGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKSKLLERK 427
           +G V+DVRIP QQ+RMFGFV+F   ETVK++L+  + H IC +RVLVKPY+EK K+L++K
Sbjct: 381 FGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKK 440

Query: 428 YHERIEQQ 436
             + ++QQ
Sbjct: 441 QQQLLQQQ 448

[Close]
BLAST of Lsi05G005200 vs. TAIR10
Match: AT1G51520.2 (AT1G51520.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-16
Identity = 64/206 (31.07%), Postives = 105/206 (50.97%), Query Frame = 1 

Query: 368 YGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKSKLLERK 427
           +GLV+DVRIP QQ+RM+GFVTF   ETV+ IL+  + H IC +RVLVKPY+EK K+L+++
Sbjct: 290 FGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKR 349

Query: 428 YHERIEQ--QQQDYF-SSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQQQQQQHALE 487
             +++ +  ++ +Y  SS  +  +S +L+    G        +  +  + +Q   QHA+E
Sbjct: 350 QQQQLHELLERGNYSPSSSPSGKDSRELYECRLGPRMFSKKTQEMLRRKTEQADLQHAIE 409

Query: 488 RSLSEMTLIQKSVGNQPYFSYQMNELKLPVPEATERFDHLMDILNVLNSGSGSSSSSSSI 547
           RS         S+G+  +F                RF+H +    +  SG+ +       
Sbjct: 410 RS--------PSIGSPSHF--------------PPRFNHSL----LFQSGNNNEEIMEGD 464

Query: 548 TDDNKQPRNVTDWNHIELNLESEGYN 571
           +D     R+  D   +  + E  GYN
Sbjct: 470 SD-----RSEKDLQQVATSNEERGYN 464

[Close]
BLAST of Lsi05G005200 vs. NCBI nr
Match: gi|778675894|ref|XP_011650493.1| (PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cucumis sativus])

HSP 1 Score: 896.0 bits (2314), Expect = 3.5e-257
Identity = 466/576 (80.90%), Postives = 501/576 (86.98%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           MEFS +TR VFHRI++IDP+NV KIIGFLLLHD+GDQEMARLAL  +SHI++VVMLAKTE
Sbjct: 8   MEFSAHTRTVFHRINQIDPDNVMKIIGFLLLHDNGDQEMARLALANESHIEKVVMLAKTE 67

Query: 63  LHQLRSMPSPVSPLSPSPSPSQGGFIPFSIRTRQFSTSPPNWEQQQLTNKPTPDYLSLGY 122
           LHQLRSMP PVSPL+              IR RQ STSPP WEQQQLTNK TPDY+SLGY
Sbjct: 68  LHQLRSMPVPVSPLA--------------IRNRQPSTSPPGWEQQQLTNKHTPDYISLGY 127

Query: 123 PDS-MYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTRHYSNVPEFQPR 182
            DS MY+LQN A  FCL+DH+E SNSGLSSFDCSYA+N LNSFSTRNTRHYSNVP+FQPR
Sbjct: 128 HDSSMYDLQNAANLFCLEDHMEQSNSGLSSFDCSYADNMLNSFSTRNTRHYSNVPDFQPR 187

Query: 183 TCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVELL 242
           TCHYYNKGFCKHGNSCRYLHSNLVPGSLS +YNT+SNVNDDHVF+PGSLERLEFEIVELL
Sbjct: 188 TCHYYNKGFCKHGNSCRYLHSNLVPGSLSHLYNTNSNVNDDHVFRPGSLERLEFEIVELL 247

Query: 243 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVIDR 302
           KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLK SIQVIDR
Sbjct: 248 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKNSIQVIDR 307

Query: 303 PHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSICIYLTLFV 362
           PHGQHAVILAEDAPKFMD+RKD+NDPGPI ++    +Y    A S      +  Y     
Sbjct: 308 PHGQHAVILAEDAPKFMDHRKDRNDPGPIVSSARQ-IYMTFPADSTFTEDDVSDYF---- 367

Query: 363 CDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKS 422
              SVHYG+VEDVRIPCQQRRMFGFVTFHS+ETVKLILSDDSEHLICGARVLVKPYREKS
Sbjct: 368 ---SVHYGMVEDVRIPCQQRRMFGFVTFHSMETVKLILSDDSEHLICGARVLVKPYREKS 427

Query: 423 KLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQQQQQQH 482
           KLLERKY ERIEQQ QDYF+SHYN+LESEQLHSI RGYDF PTMLRLRMEEQQQQQ++  
Sbjct: 428 KLLERKYQERIEQQHQDYFASHYNSLESEQLHSIGRGYDFPPTMLRLRMEEQQQQQRE-- 487

Query: 483 ALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPEATERFDHLMDILNVLNSGSGSSSSS 542
            LERSLSEMTL+QKSV NQPYFSYQMNELK+PVPEATE F+HLMDILNVLNSGS SSSSS
Sbjct: 488 -LERSLSEMTLVQKSVVNQPYFSYQMNELKVPVPEATESFEHLMDILNVLNSGSNSSSSS 547

Query: 543 SSITDDNKQ---PRNVTDWNHIELNLESEGYNLPES 575
              TDDNKQ   P+NVTDWNH+ELNLESEGYNLPES
Sbjct: 548 ---TDDNKQQPHPQNVTDWNHMELNLESEGYNLPES 555

[Close]
BLAST of Lsi05G005200 vs. NCBI nr
Match: gi|700200916|gb|KGN56049.1| (hypothetical protein Csa_3G061520 [Cucumis sativus])

HSP 1 Score: 896.0 bits (2314), Expect = 3.5e-257
Identity = 466/576 (80.90%), Postives = 501/576 (86.98%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           MEFS +TR VFHRI++IDP+NV KIIGFLLLHD+GDQEMARLAL  +SHI++VVMLAKTE
Sbjct: 36  MEFSAHTRTVFHRINQIDPDNVMKIIGFLLLHDNGDQEMARLALANESHIEKVVMLAKTE 95

Query: 63  LHQLRSMPSPVSPLSPSPSPSQGGFIPFSIRTRQFSTSPPNWEQQQLTNKPTPDYLSLGY 122
           LHQLRSMP PVSPL+              IR RQ STSPP WEQQQLTNK TPDY+SLGY
Sbjct: 96  LHQLRSMPVPVSPLA--------------IRNRQPSTSPPGWEQQQLTNKHTPDYISLGY 155

Query: 123 PDS-MYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTRHYSNVPEFQPR 182
            DS MY+LQN A  FCL+DH+E SNSGLSSFDCSYA+N LNSFSTRNTRHYSNVP+FQPR
Sbjct: 156 HDSSMYDLQNAANLFCLEDHMEQSNSGLSSFDCSYADNMLNSFSTRNTRHYSNVPDFQPR 215

Query: 183 TCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVELL 242
           TCHYYNKGFCKHGNSCRYLHSNLVPGSLS +YNT+SNVNDDHVF+PGSLERLEFEIVELL
Sbjct: 216 TCHYYNKGFCKHGNSCRYLHSNLVPGSLSHLYNTNSNVNDDHVFRPGSLERLEFEIVELL 275

Query: 243 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVIDR 302
           KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLK SIQVIDR
Sbjct: 276 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKNSIQVIDR 335

Query: 303 PHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSICIYLTLFV 362
           PHGQHAVILAEDAPKFMD+RKD+NDPGPI ++    +Y    A S      +  Y     
Sbjct: 336 PHGQHAVILAEDAPKFMDHRKDRNDPGPIVSSARQ-IYMTFPADSTFTEDDVSDYF---- 395

Query: 363 CDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKS 422
              SVHYG+VEDVRIPCQQRRMFGFVTFHS+ETVKLILSDDSEHLICGARVLVKPYREKS
Sbjct: 396 ---SVHYGMVEDVRIPCQQRRMFGFVTFHSMETVKLILSDDSEHLICGARVLVKPYREKS 455

Query: 423 KLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQQQQQQH 482
           KLLERKY ERIEQQ QDYF+SHYN+LESEQLHSI RGYDF PTMLRLRMEEQQQQQ++  
Sbjct: 456 KLLERKYQERIEQQHQDYFASHYNSLESEQLHSIGRGYDFPPTMLRLRMEEQQQQQRE-- 515

Query: 483 ALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPEATERFDHLMDILNVLNSGSGSSSSS 542
            LERSLSEMTL+QKSV NQPYFSYQMNELK+PVPEATE F+HLMDILNVLNSGS SSSSS
Sbjct: 516 -LERSLSEMTLVQKSVVNQPYFSYQMNELKVPVPEATESFEHLMDILNVLNSGSNSSSSS 575

Query: 543 SSITDDNKQ---PRNVTDWNHIELNLESEGYNLPES 575
              TDDNKQ   P+NVTDWNH+ELNLESEGYNLPES
Sbjct: 576 ---TDDNKQQPHPQNVTDWNHMELNLESEGYNLPES 583

[Close]
BLAST of Lsi05G005200 vs. NCBI nr
Match: gi|659096392|ref|XP_008449070.1| (PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cucumis melo])

HSP 1 Score: 848.2 bits (2190), Expect = 8.4e-243
Identity = 449/566 (79.33%), Postives = 483/566 (85.34%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           MEFS +T+ VFHRI +IDP+NV KIIGFLLLHD GDQEMARLAL  +SHI++VVMLAKTE
Sbjct: 1   MEFSGHTKTVFHRIRQIDPDNVMKIIGFLLLHDDGDQEMARLALAHESHIEKVVMLAKTE 60

Query: 63  LHQLRSMPSPVSPLSPSPSPSQGGFIPFSIRTRQFSTSPPNWEQQQLTNKPTPDYLSLGY 122
           LHQ RSMP PVSPL+              IR RQ STSPP WEQQQLTNK TPDY+ LGY
Sbjct: 61  LHQRRSMPVPVSPLA--------------IRNRQSSTSPPGWEQQQLTNKHTPDYIPLGY 120

Query: 123 PDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAENDLNSFSTRNTRHYSNVPEFQPRT 182
            DSMY++QN    FCL+DH+E S   LSSFDCSYAEN +NSFSTRNTRHYSNVP+FQPRT
Sbjct: 121 HDSMYDIQNSVNLFCLEDHLEQS---LSSFDCSYAENVINSFSTRNTRHYSNVPDFQPRT 180

Query: 183 CHYYNKGFCKHGNSCRYLHSN-LVPGSLSQMYNTHSNVNDDHVFQPGSLERLEFEIVELL 242
           CHYYNKGFCKHGNSCRYLHSN L+PGSLS +YN++SNVNDDHVF+PGSLERLEFEIVELL
Sbjct: 181 CHYYNKGFCKHGNSCRYLHSNNLLPGSLSHLYNSNSNVNDDHVFRPGSLERLEFEIVELL 240

Query: 243 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKTSIQVIDR 302
           KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLK+SIQVIDR
Sbjct: 241 KSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDR 300

Query: 303 PHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSICIYLTLFV 362
           PHGQHAVILAEDAPKFMD+RKD+NDPG I ++    +Y    A S      +  Y     
Sbjct: 301 PHGQHAVILAEDAPKFMDHRKDRNDPGSIVSSARQ-IYMTFPADSTFTEDDVSDYF---- 360

Query: 363 CDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKS 422
              SVHYG+VEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKS
Sbjct: 361 ---SVHYGMVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVLVKPYREKS 420

Query: 423 KLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQQQQQQQQH 482
           KLLERKY ERIE QQQDYF SHYNNLESEQLHSI RGYDF PTMLRLRMEEQQQQQQ+  
Sbjct: 421 KLLERKYQERIE-QQQDYF-SHYNNLESEQLHSIARGYDFPPTMLRLRMEEQQQQQQR-- 480

Query: 483 ALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPEATERFDHLMDILNVLNSGSGSSSSS 542
           ALERSLSEMTL+QKSV NQPYFSYQMNELKLPVPE TE FDHLMDILNVLNSG+ SSSSS
Sbjct: 481 ALERSLSEMTLVQKSVVNQPYFSYQMNELKLPVPEDTESFDHLMDILNVLNSGTNSSSSS 534

Query: 543 SSITDDNK--QPRNVTDWNHIELNLE 566
              TDDNK  QP+N+TDWNHIELNL+
Sbjct: 541 ---TDDNKQPQPQNMTDWNHIELNLQ 534

[Close]
BLAST of Lsi05G005200 vs. NCBI nr
Match: gi|802588600|ref|XP_012070977.1| (PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas])

HSP 1 Score: 501.9 bits (1291), Expect = 1.5e-138
Identity = 295/591 (49.92%), Postives = 384/591 (64.97%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           M+FS+ TR++ +RISK++PENV KIIG+LL+H  G+QEM  LA+ PD  IQE++  AK E
Sbjct: 1   MDFSDGTRILHNRISKMEPENVTKIIGYLLIHGGGEQEMFNLAMSPDVVIQEIIYKAKAE 60

Query: 63  LHQ--LRSMPSPVSPLSPSPSPSQ--GGFIPFS-IRTRQFSTSPPNWEQQQL----TNKP 122
           L+Q  L+   SP+SP   SP  S+    + PFS + +R    SP  +           K 
Sbjct: 61  LNQFPLKKANSPLSPSLNSPPVSELPSQYTPFSPVSSRSAFLSPAAFRSPSSYWDSPAKH 120

Query: 123 TPDYLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAEND--LNSFSTRNTRH 182
             D++S+GY DS  E+Q   QF  LDD IEP N G S F   Y  +D  L++ S R  R 
Sbjct: 121 NSDFVSMGYMDSASEIQGQTQFLSLDDQIEPVNLGNSGFPSDYFYSDAALSNLSARAGRR 180

Query: 183 YSNVPEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMY-NTHSNVNDDHVFQPGSL 242
           YS++ +F  +TCHY+NKGFCKHG++CRY H     G +S+ +  +  ++NDD VF PGSL
Sbjct: 181 YSSLNDFPVKTCHYFNKGFCKHGSNCRYFH-----GQVSESFPRSFDSINDDQVFSPGSL 240

Query: 243 ERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLT 302
           E+LE EI+ELLKSR+G+P+SIASLPMIYYEKYGKVLQAEGYLTESQRHGK+G+SLTKLL 
Sbjct: 241 EKLELEIIELLKSRKGNPVSIASLPMIYYEKYGKVLQAEGYLTESQRHGKAGYSLTKLLA 300

Query: 303 RLKTSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIP 362
           RLK SI++IDRPHGQHAVILAED PK+M+ R D+NDPGPI +     +Y    A S    
Sbjct: 301 RLKNSIRLIDRPHGQHAVILAEDVPKYMENRGDRNDPGPIVSGSRQ-IYLTFPAESTFTE 360

Query: 363 VSICIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGA 422
             +  Y   F        G VEDVRIPCQQ+RMFGFVTF S +TVK+IL+  + H +CGA
Sbjct: 361 DDVSNYFNTF--------GPVEDVRIPCQQKRMFGFVTFESADTVKMILAKGNPHFVCGA 420

Query: 423 RVLVKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRM 482
           RVLVKPYREKSKL++RKY ERIE     +FSS Y ++++E LHS+PRGY+ S  + +  +
Sbjct: 421 RVLVKPYREKSKLVDRKYQERIEHPL--FFSSQYLDMDAE-LHSMPRGYETSRLLRKQLL 480

Query: 483 EEQQQQQQQQHALERSLSEMTLIQKSVGNQPYFSYQMNELKLPVPE----ATERFDHLMD 542
           EEQ+Q  + +    R L+E+ +  K + NQ YF Y MN LK         +TERF +L+D
Sbjct: 481 EEQEQALELE---RRRLAELRIPPKPMTNQSYFGYSMNGLKFSEDNFNLPSTERFSYLLD 540

Query: 543 ILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNL---ESEGYNLPES 575
           +LN           S S +DD         + H E N    +S+G NLPES
Sbjct: 541 VLN-----------SGSASDDR--------FRHTETNYADQDSQGLNLPES 552

[Close]
BLAST of Lsi05G005200 vs. NCBI nr
Match: gi|1009168345|ref|XP_015902609.1| (PREDICTED: zinc finger CCCH domain-containing protein 18-like [Ziziphus jujuba])

HSP 1 Score: 501.1 bits (1289), Expect = 2.5e-138
Identity = 296/588 (50.34%), Postives = 389/588 (66.16%), Query Frame = 1 

Query: 3   MEFSEYTRVVFHRISKIDPENVKKIIGFLLLHDHGDQEMARLALGPDSHIQEVVMLAKTE 62
           M+FS   + VF RI K++PE+ +KIIG+ LL D  +Q++ RLA  P+  I +V+  AKTE
Sbjct: 2   MDFSPTAKRVFDRIQKLEPEDGRKIIGWFLLGDLDEQDLVRLAEAPEHLIHQVIHKAKTE 61

Query: 63  LHQL--RSMPSPVSPLSPSPSPSQGGFIPFSIRTRQ----FSTSPPNWEQQQLTNKPTPD 122
           L  L  R + SPVSP + +P+P    F P S R       F  S   WE Q +T K + D
Sbjct: 62  LQSLPTRLVSSPVSPPT-NPTPVFTPFAPVSSRPYSSPATFRPSSAYWEPQIVT-KNSSD 121

Query: 123 YLSLGYPDSMYELQNPAQFFCLDDHIEPSNSGLSSFDCSYAEND---LNSFSTRNTRHYS 182
           +L  G+ DS  ELQN  QF  L+D +EP NSG+S F   Y   D   + + + R +R +S
Sbjct: 122 FLPAGFSDSSLELQNQTQFSTLEDQMEPLNSGISGFSSDYYYPDASAMGNLNARASRRFS 181

Query: 183 NVPEFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSQMYNTHSNVNDDHVFQPGSLERL 242
           ++ EF  +TCHY+NKGFCKHG+SCRY H  +VP S SQ+Y  +  +ND+H+F PGSLE+L
Sbjct: 182 SLSEFPVKTCHYFNKGFCKHGSSCRYFHGQVVPESFSQVYG-NDGINDEHLFLPGSLEKL 241

Query: 243 EFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLK 302
           E EI+ELLKSRRG+P+SIASLP +YYEKYG+ LQA+GYLTESQRHGK+G+SLTKLL RLK
Sbjct: 242 EIEIIELLKSRRGNPVSIASLPAMYYEKYGRSLQAQGYLTESQRHGKAGYSLTKLLARLK 301

Query: 303 TSIQVIDRPHGQHAVILAEDAPKFMDYRKDKNDPGPIANAKYACVYWHCIALSWLIPVSI 362
            SI++IDRPHGQHAVILAEDAPK+M+ R +K+DPGPI +     +Y    A S      +
Sbjct: 302 NSIRMIDRPHGQHAVILAEDAPKYMESRNEKSDPGPIVSGSRQ-IYLTFPAESTFTEDDV 361

Query: 363 CIYLTLFVCDCSVHYGLVEDVRIPCQQRRMFGFVTFHSIETVKLILSDDSEHLICGARVL 422
             Y   F        G VEDVRIPCQQ+RMFGFVTF S +TVK+IL+  + H +CGARVL
Sbjct: 362 SNYFNTF--------GPVEDVRIPCQQKRMFGFVTFVSADTVKMILAKGNPHFVCGARVL 421

Query: 423 VKPYREKSKLLERKYHERIEQQQQDYFSSHYNNLESEQLHSIPRGYDFSPTMLRLRMEEQ 482
           VKPYREKSKL++RKY +RIE  Q  Y+S HY+++E++ LHS+ R Y+ S  ++R     +
Sbjct: 422 VKPYREKSKLVDRKYPDRIENPQ--YYSPHYSDIETD-LHSMSRCYESSRMLVR-----K 481

Query: 483 QQQQQQQHALE---RSLSEMTLIQKSVGNQPYFSYQMNELKLP----VPEATERFDHLMD 542
           Q  +  QHALE   R L+E+ L +K V NQPY  Y M+ LK+     + ++ E FD L  
Sbjct: 482 QLMEDPQHALELERRRLAELQLTRKPVNNQPYLGYSMDGLKMSEDHFILQSAEEFDRL-- 541

Query: 543 ILNVLNSGSGSSSSSSSITDDNKQPRNVTDWNHIELNLESEGYNLPES 575
            LNVLNSGS S        DDN +    TD N+ +   +S+G NLP+S
Sbjct: 542 -LNVLNSGSTS--------DDNHKH---TDMNYTD--QDSQGLNLPDS 553

The following BLAST results are available for this feature:
BLAST of Lsi05G005200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H18_ARATH8.5e-9440.14Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g051... [more]
C3H54_ORYSJ6.8e-5938.42Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN... [more]
C3H51_ORYSJ1.6e-3632.62Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. ja... [more]
C3H53_ORYSJ1.3e-2026.71Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN... [more]
C3H23_ORYSJ6.2e-2030.91Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN... [more]
BLAST of Lsi05G005200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4W6_CUCSA2.5e-25780.90Uncharacterized protein OS=Cucumis sativus GN=Csa_3G061520 PE=4 SV=1[more]
M5X0G7_PRUPE5.1e-13850.17Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019338mg PE=4 SV=1[more]
A0A067KT06_JATCU4.3e-13749.66Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00999 PE=4 SV=1[more]
A0A067FGD1_CITSI2.2e-13349.66Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008439mg PE=4 SV=1[more]
V4TYX1_9ROSI5.0e-13349.49Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007876mg PE=4 SV=1[more]
BLAST of Lsi05G005200 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G05160.14.8e-9540.14 CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT3G52980.12.2e-7643.98 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)... [more]
AT3G21100.23.1e-1734.69 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G12440.12.0e-1655.88 CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT1G51520.22.0e-1631.07 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Lsi05G005200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778675894|ref|XP_011650493.1|3.5e-25780.90PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cucumis sativus][more]
gi|700200916|gb|KGN56049.1|3.5e-25780.90hypothetical protein Csa_3G061520 [Cucumis sativus][more]
gi|659096392|ref|XP_008449070.1|8.4e-24379.33PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cucumis melo][more]
gi|802588600|ref|XP_012070977.1|1.5e-13849.92PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatrop... [more]
gi|1009168345|ref|XP_015902609.1|2.5e-13850.34PREDICTED: zinc finger CCCH domain-containing protein 18-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR025605OST-HTH/LOTUS_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G005200.1Lsi05G005200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 176..202
score: 3.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 180..202
score: 1.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 177..204
score: 14
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 180..202
score: 5.1
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 367..442
score: 2.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 367..444
score: 1.2
IPR025605OST-HTH/LOTUS domainPFAMPF12872OST-HTHcoord: 229..307
score: 4.0
IPR025605OST-HTH/LOTUS domainPROFILEPS51644HTH_OSTcoord: 229..312
score: 10
NoneNo IPR availablePANTHERPTHR24009FAMILY NOT NAMEDcoord: 346..529
score: 1.2E-175coord: 4..328
score: 1.2E
NoneNo IPR availablePANTHERPTHR24009:SF4ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18coord: 346..529
score: 1.2E-175coord: 4..328
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G005200Csa3G061520Cucumber (Chinese Long) v2culsiB198
Lsi05G005200CSPI03G04380Wild cucumber (PI 183967)cpilsiB197
Lsi05G005200Cucsa.042290Cucumber (Gy14) v1cgylsiB015
Lsi05G005200CmaCh16G009460Cucurbita maxima (Rimu)cmalsiB317
Lsi05G005200CmaCh06G006610Cucurbita maxima (Rimu)cmalsiB767
Lsi05G005200CmoCh16G009840Cucurbita moschata (Rifu)cmolsiB306
Lsi05G005200CmoCh06G006700Cucurbita moschata (Rifu)cmolsiB760
Lsi05G005200Cla004489Watermelon (97103) v1lsiwmB351
Lsi05G005200MELO3C014131Melon (DHL92) v3.5.1lsimeB381
Lsi05G005200ClCG10G004560Watermelon (Charleston Gray)lsiwcgB318
Lsi05G005200MELO3C014131.2Melon (DHL92) v3.6.1lsimedB386
Lsi05G005200Cla97C10G189000Watermelon (97103) v2lsiwmbB322
Lsi05G005200Bhi11G000389Wax gourdlsiwgoB410
Lsi05G005200Cp4.1LG14g07670Cucurbita pepo (Zucchini)cpelsiB179
Lsi05G005200Cp4.1LG16g03870Cucurbita pepo (Zucchini)cpelsiB245
Lsi05G005200Cp4.1LG08g08480Cucurbita pepo (Zucchini)cpelsiB717
Lsi05G005200CsGy3G004420Cucumber (Gy14) v2cgyblsiB183
Lsi05G005200Carg22345Silver-seed gourdcarlsiB531
Lsi05G005200Carg23556Silver-seed gourdcarlsiB007
Lsi05G005200CsaV3_3G004380Cucumber (Chinese Long) v3cuclsiB217
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi05G005200Lsi10G000520Bottle gourd (USVL1VR-Ls)lsilsiB045
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G005200Cucurbita pepo (Zucchini)cpelsiB174
Lsi05G005200Cucurbita pepo (Zucchini)cpelsiB720