Lsi05G004630 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G004630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Small GTP-binding protein
Location	chr05 : 5899207 .. 5901572 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATAGGAAACAAAGTTGATCTGGACCGTCGAATTGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTGTTTTTTCACGCATCCGCTAAAACAACTCAAAATATTCACGAGGTTTGTTCCTTAATTTTGCTTTAAAATTTCTCTAATCTCGTTTTTCATGAGCAATGATTAGATGCAGCCTCTTAATTTTATACTCTTCATTTTTATATACACAAAGATAAGTGTAGTCCAATGAGCACCTAAGTATTTTTCCTTTCATTATTATTGTGTTTAACATGTCTAGTAAATTCATAAATTTTAAAAAGTTTATGAAATAAAATTATAATTTAACTTATTATTTTTTTTAAAAAAAATATCTTTTTCATCGATAAGTTTTACAATTTTTACACATTTATTTCTAATTTCTGAGTTTTGTTTCTGTTTGAGTTCTTTGAGATTTTTCGTTTTAACTTTGATTTTTTACTATATACTCATTTTTTCAATCTTGGTGTTAGTTTCTTTTATTAATTTAAAAAAATTATATTAATTATAACTAAATTAGTTTCTACTAATTTGTCTATCACATTAAAATTAATTTAAAATACATTCACATCGTGATCTTCTATTTTAATTAACTAAGAGTTTAGGATAAAGATTAAAAATGAATATTAGTAAAAATTTAAGGGTGAAAGTGTAAAGTTTTAAAATCTAAAGATAAATTGAATTCAAAATTCAAAAATAAAAAAGGTAGTATTTTCATTTTGAAATTCAAATGAAATTTTGAACATGTCAAAACCTAAGTTTCAAATAGAAATTAGACTCAAAACTTAACACTGTAATTTTTTTTTTCTTTTGAGCATTTCATTTTGATAATTACCAAACATATTGTACTTGATTTTACAGGCATTCGCAAAAATTGCAGCTAATGTACTTGAAAAGATTGAGGATGGTGTCATTAATTTATCCAATACAGTAAGTTTTATTTATTTATTTATTTTGAAATATTTTGCACTTTTCCTTTTCCCTCAAAATTAGACCAATTTTAAAAAAATGTCAAACTATTTACAGAAAATAGCAAAAAAAAAAAATACTAATAGACTTCTATTAGCATCTATTAGTGATAGAATTCTATCATTTTTATCACTAATAGATCATGATAGACTTATTTTGCTATTTTATGTAAATAGTTTCTCTTATTTTTCTATTTTAAAAATTCTCCTTCAGAAATTAATAACTTAGATTATTGGGGTATAATTAATGTTAAGTTGTTACCTAAAAGAAAAGATAGCTATTTACAAGGATACTAATGGTTTAGTTTGGAATATAAACTTGTTTACGCATAGTTGATTTCAACTATAAATTTAGGTTAAAAATCACTTATAGTCCCTAAACTTTTATAAATGTAACAATTTAGTCCATGAACTTTCAATTTTGTAACAATTTAGTCCCTAAACTTTACCATGTAACAATTTAGTCCTTGTACTTTAAACTTTGTAATAATTTAGTCTTTATTGTAGAAAATAGTGTTGAGATTTAATGAGATTTCTTGTATAAATGAACCGATAAACTAATTAGGAACTTAATATTTTTATAAATACAAGGTCTACATCATAAAATAAAAAAAATTAACATCTAATTTTGATAATTGTTTTTATGTTAGAGACTAAATTGTTACAAATTTGAAAGTACAAAGACTAAATTGATACATACTAAAGTTTGAGGACTAAATTGTTACAAAATTGAAAATAGATGGACTAAATCGTTACAAACCAAAGTTCAGGAACTAAATTGTTACTGTTTAAGGACCAAAAGTATTTTTTAACCATAAATTTACTAACAATCCGAATCATTACTAGATTTACATTTGATAATATTTTTGGTCTCTTGCTTCAGTTTTTTTTTTTTAATTAATTACTAATGGAGAGTTGATGTACCACATATTTTATTTTAATATATATATATATATGTTTGTCATGAATTGATGCCGCTACATATTATAAAATTATTTATAAGTTTGAATCTTATTGTATTATAATCTTACTTTCAAGTTCTAACAAGAAATGATGATTTGTATAGTATAGAGAGGAAGATGATACTTTAATCATATTTATATGTGATTTAGAAAATTAAATTAATTTTGGTATTTCATTGAATATTTGCAGCCATCTGGAATTAAAGTCGGTTTGCGGGGCCAACGGTCATCGACGGCAATAGCTACAACAATTTCGTTGCAAAGTGGATGTTGTAGCATACAATGAACATTGGGAATTAGATCATGTATACACAATGGATTTTTAACGATTTATTTAGTTATTATTATATATATTTTTTGAAATTCAATATTATACAAAGTGAAAATTCAAATC

mRNA sequence

ATGTTGATAGGAAACAAAGTTGATCTGGACCGTCGAATTGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTGTTTTTTCACGCATCCGCTAAAACAACTCAAAATATTCACGAGGCATTCGCAAAAATTGCAGCTAATGTACTTGAAAAGATTGAGGATGGTGTCATTAATTTATCCAATACACCATCTGGAATTAAAGTCGGTTTGCGGGGCCAACGGTCATCGACGGCAATAGCTACAACAATTTCGTTGCAAAGTGGATGTTGTAGCATACAATGAACATTGGGAATTAGATCATGTATACACAATGGATTTTTAACGATTTATTTAGTTATTATTATATATATTTTTTGAAATTCAATATTATACAAAGTGAAAATTCAAATC

Coding sequence (CDS)

ATGTTGATAGGAAACAAAGTTGATCTGGACCGTCGAATTGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTGTTTTTTCACGCATCCGCTAAAACAACTCAAAATATTCACGAGGCATTCGCAAAAATTGCAGCTAATGTACTTGAAAAGATTGAGGATGGTGTCATTAATTTATCCAATACACCATCTGGAATTAAAGTCGGTTTGCGGGGCCAACGGTCATCGACGGCAATAGCTACAACAATTTCGTTGCAAAGTGGATGTTGTAGCATACAATGA

Protein sequence

MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCSIQ

Homology

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BLAST of Lsi05G004630 vs. Swiss-Prot
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-20
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  +  VS+EEG+QFAK++GLLF  ASA+T QN+ EAF + AA +L+ I+DG
Sbjct: 115 MLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDG 174

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC 96
           V ++SN  SGIK+G  R Q ++     TIS   GCC
Sbjct: 175 VFDVSNESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

[Close]

BLAST of Lsi05G004630 vs. Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.9e-20
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K A  + +KI+DG
Sbjct: 115 MLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDG 174

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS 97
           V ++SN   GIKVG      S    ++ S   GCCS
Sbjct: 175 VFDVSNESYGIKVGYAIPGQSGGAGSSSSQGGGCCS 210

[Close]

BLAST of Lsi05G004630 vs. Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-19
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K A  + +KI+DG
Sbjct: 115 MLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDG 174

Query: 61  VINLSNTPSGIKVG--LRGQRSSTAIATTISLQSGCCS 97
           V ++SN   GIKVG  + GQ      A + S   GCCS
Sbjct: 175 VFDVSNESYGIKVGYVVPGQSGG---AGSSSQGGGCCS 209

[Close]

BLAST of Lsi05G004630 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.6e-19
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K AA + +KI+DG
Sbjct: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174

Query: 61  VINLSNTPSGIKVGLRG-QRSSTAIATTISLQSGCC 96
           V ++SN   GIKVG  G    S     + S   GCC
Sbjct: 175 VFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

[Close]

BLAST of Lsi05G004630 vs. Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-16
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL+ R EV +EEGE FA+++GL+F   SAKT  N+ EAF   A  + EKI++G
Sbjct: 115 MLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEG 174

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQ---SGCC 96
           V +++N  +GIK+G +   ++  +A     Q    GCC
Sbjct: 175 VFDINNEANGIKIGPQHAATNATLAGNQGGQQAGGGCC 212

[Close]

BLAST of Lsi05G004630 vs. TrEMBL
Match: A0A067ECQ7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028251mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 67  MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS 97
            ++  N  SGIKVG  RGQ  S A   T+S + GCCS
Sbjct: 127 ALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 163

[Close]

BLAST of Lsi05G004630 vs. TrEMBL
Match: A0A067EDK6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028251mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS 97
            ++  N  SGIKVG  RGQ  S A   T+S + GCCS
Sbjct: 175 ALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211

[Close]

BLAST of Lsi05G004630 vs. TrEMBL
Match: A0A165WQ65_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015067 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.3e-20
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T Q++ EAF K AA +L+KIE+G
Sbjct: 115 MLIGNKSDLAHRRAVSREEGEQFAKENGLLFLEASARTAQHVEEAFIKTAARILQKIEEG 174

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS 97
           V ++SN  SGIK+G  RGQ +  A   +++  +GCC+
Sbjct: 175 VYDVSNESSGIKLGYQRGQGAPGARDASVTRNAGCCN 211

[Close]

BLAST of Lsi05G004630 vs. TrEMBL
Match: A0A0A0LC04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597310 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.2e-20
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 167 MLVGNKADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 226

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC 96
           V ++SN  SGIKVG  R Q  S A   T++ + GCC
Sbjct: 227 VFDVSNESSGIKVGYGRPQGPSGARDGTVAQRGGCC 262

[Close]

BLAST of Lsi05G004630 vs. TrEMBL
Match: A5AMI3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005966 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 143 MLIGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAARILQNIQEG 202

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS 97
           V +LSN  SGIKVG  G+    +   T+S + GCC+
Sbjct: 203 VFDLSNESSGIKVGY-GRPQGPSGDGTVSQRGGCCN 237

[Close]

BLAST of Lsi05G004630 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-21
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  +  VS+EEG+QFAK++GLLF  ASA+T QN+ EAF + AA +L+ I+DG
Sbjct: 115 MLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNIQDG 174

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC 96
           V ++SN  SGIK+G  R Q ++     TIS   GCC
Sbjct: 175 VFDVSNESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

[Close]

BLAST of Lsi05G004630 vs. TAIR10
Match: AT4G17170.1 (AT4G17170.1 RAB GTPase homolog B1C)

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-20
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K AA + +KI+DG
Sbjct: 115 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 174

Query: 61  VINLSNTPSGIKVGLRG-QRSSTAIATTISLQSGCC 96
           V ++SN   GIKVG  G    S     + S   GCC
Sbjct: 175 VFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

[Close]

BLAST of Lsi05G004630 vs. TAIR10
Match: AT4G17160.1 (AT4G17160.1 RAB GTPase homolog B1A)

HSP 1 Score: 84.0 bits (206), Expect = 5.8e-17
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL+ +  VS EEGEQFA+++GL+F  ASAKT  N+ EAF + AA + ++I+DG
Sbjct: 115 MLIGNKCDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRIQDG 174

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCC 96
           V++ +N P GI  G  G +     A++   + GCC
Sbjct: 175 VVDEANEP-GITPGPFGGKD----ASSSQQRRGCC 204

[Close]

BLAST of Lsi05G004630 vs. TAIR10
Match: AT3G09900.1 (AT3G09900.1 RAB GTPase homolog E1E)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-08
Identity = 31/97 (31.96%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 1   MLIGNKVDLDR-RIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIED 60
           +L+GNK D+D  +  V   +G+  A + G+ FF  SAKT QN+ + F  IA ++ +++ +
Sbjct: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTE 183

Query: 61  GVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS 97
              +    P GIK+    Q ++ A +++ + +S CCS
Sbjct: 184 S--DTKAEPQGIKI--TKQDANKASSSSTNEKSACCS 216

[Close]

BLAST of Lsi05G004630 vs. TAIR10
Match: AT1G43890.1 (AT1G43890.1 RAB GTPASE HOMOLOG B18)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-08
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNKVD +    VS++EG  FA++ G LF   SAKT  N+ + F ++   +LE     
Sbjct: 123 MLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILE----- 182

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS 97
               S T  G   G +         TT +  S CCS
Sbjct: 183 --TPSLTAEGSSGGKKNIFKQNPAQTTSTSSSYCCS 211

[Close]

BLAST of Lsi05G004630 vs. NCBI nr
Match: gi|470137861|ref|XP_004304678.1| (PREDICTED: ras-related protein RABB1b [Fragaria vesca subsp. vesca])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I+DG
Sbjct: 115 MLVGNKCDLAHRRAVSREEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQDG 174

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS 97
           V ++SN  SGIKVG  R Q  S A    ++ +SGCCS
Sbjct: 175 VFDVSNESSGIKVGYGRSQGPSGARDGAVAQRSGCCS 211

[Close]

BLAST of Lsi05G004630 vs. NCBI nr
Match: gi|657974700|ref|XP_008379185.1| (PREDICTED: ras-related protein RABB1b [Malus domestica])

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-20
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 115 MLIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS 97
           V ++SN  SGIKVG    +  +    T++ + GCCS
Sbjct: 175 VFDVSNESSGIKVGYGRPQGQSGSGGTVAQRGGCCS 210

[Close]

BLAST of Lsi05G004630 vs. NCBI nr
Match: gi|658035704|ref|XP_008353384.1| (PREDICTED: ras-related protein RABB1b [Malus domestica])

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-20
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 115 MLIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS 97
           V ++SN  SGIKVG    +  +    T++ + GCCS
Sbjct: 175 VFDVSNESSGIKVGYGRPQGXSGTGGTVAQRGGCCS 210

[Close]

BLAST of Lsi05G004630 vs. NCBI nr
Match: gi|694389412|ref|XP_009370334.1| (PREDICTED: ras-related protein RABB1b [Pyrus x bretschneideri])

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 115 MLIGNKCDLSHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174

Query: 61  VINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS 97
           V ++SN  SGIKVG    +  +    T++   GCCS
Sbjct: 175 VFDVSNESSGIKVGYGRPQGQSGTGGTVAQGGGCCS 210

[Close]

BLAST of Lsi05G004630 vs. NCBI nr
Match: gi|641829903|gb|KDO49007.1| (hypothetical protein CISIN_1g028251mg [Citrus sinensis])

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-20
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1


Query: 1   MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDG 60
           ML+GNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++G
Sbjct: 67  MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 126

Query: 61  VINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS 97
            ++  N  SGIKVG  RGQ  S A   T+S + GCCS
Sbjct: 127 ALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 163

The following BLAST results are available for this feature:

BLAST of Lsi05G004630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAB1B_ARATH	5.3e-20	54.17	Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1	[more]
RAB2B_MAIZE	6.9e-20	53.13	Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1	[more]
RAB2A_MAIZE	5.8e-19	54.08	Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1	[more]
RAB1C_ARATH	7.6e-19	55.21	Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1	[more]
RAB2A_CHICK	1.6e-16	44.90	Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1	[more]

BLAST of Lsi05G004630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067ECQ7_CITSI	3.7e-20	57.73	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028251mg PE=4 SV=1	[more]
A0A067EDK6_CITSI	3.7e-20	57.73	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028251mg PE=4 SV=1	[more]
A0A165WQ65_DAUCA	6.3e-20	56.70	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015067 PE=4 SV=1	[more]
A0A0A0LC04_CUCSA	8.2e-20	57.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597310 PE=4 SV=1	[more]
A5AMI3_VITVI	1.1e-19	57.29	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005966 PE=4 SV=1	[more]

BLAST of Lsi05G004630 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35860.1	3.0e-21	54.17	GTP-binding 2	[more]
AT4G17170.1	4.3e-20	55.21	RAB GTPase homolog B1C	[more]
AT4G17160.1	5.8e-17	47.37	RAB GTPase homolog B1A	[more]
AT3G09900.1	2.9e-08	31.96	RAB GTPase homolog E1E	[more]
AT1G43890.1	3.8e-08	35.42	RAB GTPASE HOMOLOG B18	[more]

BLAST of Lsi05G004630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|470137861\|ref\|XP_004304678.1\|	1.8e-20	58.76	PREDICTED: ras-related protein RABB1b [Fragaria vesca subsp. vesca]	[more]
gi\|657974700\|ref\|XP_008379185.1\|	2.4e-20	55.21	PREDICTED: ras-related protein RABB1b [Malus domestica]	[more]
gi\|658035704\|ref\|XP_008353384.1\|	2.4e-20	55.21	PREDICTED: ras-related protein RABB1b [Malus domestica]	[more]
gi\|694389412\|ref\|XP_009370334.1\|	4.0e-20	55.21	PREDICTED: ras-related protein RABB1b [Pyrus x bretschneideri]	[more]
gi\|641829903\|gb\|KDO49007.1\|	5.3e-20	57.73	hypothetical protein CISIN_1g028251mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR001806	Small_GTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004630.1	Lsi05G004630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 1..54 score: 4.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 1..79 score: 3.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..66 score: 3.75
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..97 score: 8.9
None	No IPR available	PANTHER	PTHR24073:SF597	RAS-RELATED PROTEIN RABB1B	coord: 1..97 score: 8.9
None	No IPR available	PROFILE	PS51419	RAB	coord: 1..95 score: 11

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G004630	ClCG05G012860	Watermelon (Charleston Gray)	lsiwcgB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G004630	Silver-seed gourd	carlsiB334
Lsi05G004630	Cucumber (Chinese Long) v3	cuclsiB233
Lsi05G004630	Watermelon (97103) v2	lsiwmbB329
Lsi05G004630	Wax gourd	lsiwgoB436
Lsi05G004630	Cucumber (Gy14) v1	cgylsiB248
Lsi05G004630	Cucurbita maxima (Rimu)	cmalsiB125
Lsi05G004630	Cucurbita moschata (Rifu)	cmolsiB117
Lsi05G004630	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G004630	Cucurbita pepo (Zucchini)	cpelsiB555
Lsi05G004630	Wild cucumber (PI 183967)	cpilsiB212
Lsi05G004630	Cucumber (Chinese Long) v2	culsiB214
Lsi05G004630	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G004630	Melon (DHL92) v3.5.1	lsimeB383
Lsi05G004630	Watermelon (97103) v1	lsiwmB368
Lsi05G004630	Cucumber (Gy14) v2	cgyblsiB201
Lsi05G004630	Melon (DHL92) v3.6.1	lsimedB389
Lsi05G004630	Melon (DHL92) v3.6.1	lsimedB402