Lsi05G004050 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G004050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	AGAMOUS MADS box factor transcription factor
Location	chr05 : 5119275 .. 5120235 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGAGGAATATTGAGCCTTAAACTCATTCCTAATCTCAAATCTCGCAGAACAACCTTTCTGAAGAGGAAGAAAAGCCTGATGAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACCTGCGTTTTCATCGCTTCTGACTGTGACCCATCAACCCACTTTGAAACTTGGCCTCAAAATCACGATCAAATCCAGGCTATGATCCGTTCCTATAAATCTCACTCTTTCCCCAAACAATCCCGCAACTCCTCTTACGATCTCCAACAATTCTTCTCTGATCGCAAGAACAAAATCGTAACAGACATCTAAACTGCGTCAGAATGTTGACAAATTCAAGGATCCCCACCTTGATTCTCTATTGGAACAGCAATTGAAGGAGTTGTTGGCCGCTTTGGATTCCAAAATCGGAGTTGCAGACGGCATGATTCAGTTCATGGAGGCCGATTACGATCATTTGATTGAGGAAGCATCTGGAATTTCAAGCATTAACATACCATCATTCAATCCTTTCGAAACAGAACAACCCCCTAAATTAGACCTACCAGAGTTATTGATTGGGCCATATGGGTTTGAATACAATGTCGAGAAGTTCATGGAGACCGATTACGATCACTTAATTGTGGAAGCATCTGAAATTTCAAACATTGACCCACCATCATTCAGTTCTTTTGAAACAAAGGAAACCCCTGAATTAGACATATCGGAGTTGTTGATTGGGCCAGATGGGTTTGAATACAATGTCGAGGAGTTCACCGAGGTCGACTACGATCACTTGATTGAGGAAACATCTAGAATTTCAAGCATTGACACACCATCATTCAGTCCTTTCGAAATAGAGGAACTCCCTGAAGTAGACATATCGGAGTTGTTGATTTTGGCAGATGAGTTTGAATGCAATGTCCAGGATTTTCAATCTCTATTGGAGGACGAGCTTCTCGAAACCCTGCTTTAG

mRNA sequence

ATGGGCAGAGGAATATTGAGCCTTAAACTCATTCCTAATCTCAAATCTCGCAGAACAACCTTTCTGAAGAGGAAGAAAAGCCTGATGAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACCTGCGTTTTCATCGCTTCTGACTGTGACCCATCAACCCACTTTGAAACTTGGCCTCAAAATCACGATCAAATCCAGGCTATGATCCGTTCCTATAAATCTCACTCTTTCCCCAAACAATCCCGCAACTCCTCTTACGATCTCCAACAATTCTTCTCTGATCGCAAGAACAAAATCCAATTGAAGGAGTTGTTGGCCGCTTTGGATTCCAAAATCGGAGTTGCAGACGGCATGATTCAGTTCATGGAGGCCGATTACGATCATTTGATTGAGGAAGCATCTGGAATTTCAAGCATTAACATACCATCATTCAATCCTTTCGAAACAGAACAACCCCCTAAATTAGACCTACCAGAGTTATTGATTGGGCCATATGGGTTTGAATACAATGTCGAGAAGTTCATGGAGACCGATTACGATCACTTAATTGTGGAAGCATCTGAAATTTCAAACATTGACCCACCATCATTCAGTTCTTTTGAAACAAAGGAAACCCCTGAATTAGACATATCGGAGTTGTTGATTGGGCCAGATGGGTTTGAATACAATGTCGAGGAGTTCACCGAGGTCGACTACGATCACTTGATTGAGGAAACATCTAGAATTTCAAGCATTGACACACCATCATTCAGTCCTTTCGAAATAGAGGAACTCCCTGAAGTAGACATATCGGAGTTGTTGATTTTGGCAGATGAGTTTGAATGCAATGTCCAGGATTTTCAATCTCTATTGGAGGACGAGCTTCTCGAAACCCTGCTTTAG

Coding sequence (CDS)

ATGGGCAGAGGAATATTGAGCCTTAAACTCATTCCTAATCTCAAATCTCGCAGAACAACCTTTCTGAAGAGGAAGAAAAGCCTGATGAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACCTGCGTTTTCATCGCTTCTGACTGTGACCCATCAACCCACTTTGAAACTTGGCCTCAAAATCACGATCAAATCCAGGCTATGATCCGTTCCTATAAATCTCACTCTTTCCCCAAACAATCCCGCAACTCCTCTTACGATCTCCAACAATTCTTCTCTGATCGCAAGAACAAAATCCAATTGAAGGAGTTGTTGGCCGCTTTGGATTCCAAAATCGGAGTTGCAGACGGCATGATTCAGTTCATGGAGGCCGATTACGATCATTTGATTGAGGAAGCATCTGGAATTTCAAGCATTAACATACCATCATTCAATCCTTTCGAAACAGAACAACCCCCTAAATTAGACCTACCAGAGTTATTGATTGGGCCATATGGGTTTGAATACAATGTCGAGAAGTTCATGGAGACCGATTACGATCACTTAATTGTGGAAGCATCTGAAATTTCAAACATTGACCCACCATCATTCAGTTCTTTTGAAACAAAGGAAACCCCTGAATTAGACATATCGGAGTTGTTGATTGGGCCAGATGGGTTTGAATACAATGTCGAGGAGTTCACCGAGGTCGACTACGATCACTTGATTGAGGAAACATCTAGAATTTCAAGCATTGACACACCATCATTCAGTCCTTTCGAAATAGAGGAACTCCCTGAAGTAGACATATCGGAGTTGTTGATTTTGGCAGATGAGTTTGAATGCAATGTCCAGGATTTTCAATCTCTATTGGAGGACGAGCTTCTCGAAACCCTGCTTTAG

Protein sequence

MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKIQLKELLAALDSKIGVADGMIQFMEADYDHLIEEASGISSINIPSFNPFETEQPPKLDLPELLIGPYGFEYNVEKFMETDYDHLIVEASEISNIDPPSFSSFETKETPELDISELLIGPDGFEYNVEEFTEVDYDHLIEETSRISSIDTPSFSPFEIEELPEVDISELLILADEFECNVQDFQSLLEDELLETLL

Homology

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BLAST of Lsi05G004050 vs. Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-07
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  + I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PQNHDQIQAMIRSYKSHSF----PKQSRNSSYDLQQFFSDRKNKIQL 104
           P     +   +  Y+ HS+    P QS     D  Q +   K+++++
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEI 104

[Close]

BLAST of Lsi05G004050 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-07
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 1  MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60
          M R  + L  I N  SR+ TF KRKK LMKK +ELSTLC +  C  I S  D  T+ E W
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYD--TNPEVW 60

Query: 61 PQNHDQIQAMIRSYKS 77
          P N   +Q ++  +++
Sbjct: 61 PSN-SGVQRVVSEFRT 73

[Close]

BLAST of Lsi05G004050 vs. Swiss-Prot
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.3e-07
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1


Query: 5   ILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TC+ +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PQNHDQIQAMIRSYK---SHSFPKQS----------------------RNSSYDLQQFFS 118
           P++  +++A+IR YK   S S  K++                      R + Y   +   
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

[Close]

BLAST of Lsi05G004050 vs. Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.0e-07
Identity = 48/169 (28.40%), Postives = 76/169 (44.97%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASD-------CDP 60
           MGRG + +K I N  +R+ TF KR+  ++KKA E+S LCD +  V I S        C P
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60

Query: 61  STHFE-------------TWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNK 120
            T                 W + H  + A I   K     K++ N   +L+    +  N 
Sbjct: 61  KTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIK-----KENDNMQIELRHLKGEDLNS 120

Query: 121 IQLKELL---AALDSKI-GVADGMIQFMEADY--DHLIEEASGISSINI 144
           +Q KEL+    ALD+ I  V D ++   E     D ++E+ + + +  +
Sbjct: 121 LQPKELIMIEEALDNGIVNVNDKLMDHWERHVRTDKMLEDENKLLAFKL 164

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BLAST of Lsi05G004050 vs. Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 1  MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASD 51
          MGRG + LK+I N  +R+ TF KR+K L+KKAYELS LCD +  + I S+
Sbjct: 1  MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSN 50

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BLAST of Lsi05G004050 vs. TrEMBL
Match: A0A0A0LAL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.4e-54
Identity = 132/217 (60.83%), Postives = 152/217 (70.05%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60
           MGRGILSLKLIPN KSRRTTFLKRKKSL+KKAYELSTLCDVQTC+FIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKI------------------Q 120
           P NH QI  MIRSYKSHSF K   NSSYDL +FFSDRKNKI                  Q
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKP--NSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120

Query: 121 LKELLAALDSKIGVADGMIQFMEADYDHLIEEASGISSINIPSFNPFETEQPPKLDLPEL 180
           L ELL ALDSKI VA+ MI+FMEADYDHLI++A G+ +   PS    E E+  + ++ +L
Sbjct: 121 LMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDT--PPS--QTEDEETTQFNVSDL 180

Query: 181 LIGPYGF-EYNVEKF---METDYDHLIVEASEISNID 196
              P  F EYNVE F   +E  +   +V+ + I + D
Sbjct: 181 FNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFD 211

[Close]

BLAST of Lsi05G004050 vs. TrEMBL
Match: A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ CV +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKIQLKELLAALDSKIGV 120
             TWP + D++  MI SYK++   K+ R  S+ L  FFS+RK K++        D    V
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVR-KSFGLIDFFSERKKKVETDMSKLRKD----V 120

Query: 121 ADGMIQFMEADYDHLIEEASGISSINIPS 146
           ++      +   DHL+E+   +  + + S
Sbjct: 121 SEERFPSWDERLDHLLEDQLRVLMVELDS 144

[Close]

BLAST of Lsi05G004050 vs. TrEMBL
Match: M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K +MKKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKI 102
           TWPQN +Q+  +I  YK+ +  K ++  ++DL     DRKNK+
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAK-KTFDLSDLLMDRKNKV 102

[Close]

BLAST of Lsi05G004050 vs. TrEMBL
Match: A0A059BT66_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02794 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.3e-14
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVF---IASDCDPSTHF 60
           MGR  L LKLI N +SRRTTF KRKK LMKKA E  TLC V TCV    I    D     
Sbjct: 1   MGRAKLKLKLISNSRSRRTTFEKRKKGLMKKAGEFKTLCGVDTCVIINPIGISSDGLVKM 60

Query: 61  ETWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKI 102
           ETWP +  +++ ++R Y+S +  +++R+++  L +FF+ RK KI
Sbjct: 61  ETWPPDRKEVERIVRRYQSEATDRRARHAT-GLHEFFASRKKKI 103

[Close]

BLAST of Lsi05G004050 vs. TrEMBL
Match: M5XI05_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.9e-14
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFI----ASDCDPSTH 60
           MGRG L ++LI N ++R+TTF KR+K +MKKAYE STLC++  C+ I     +D  P  H
Sbjct: 1   MGRGRLKMELIANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQTDRPPELH 60

Query: 61  FETWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKIQL 104
             TWP+N D++  +I  YK+ S  ++    ++DL     DRK K+ +
Sbjct: 61  --TWPENRDEVDRIINKYKA-SIMRKPAKKTFDLSDLLRDRKTKVHV 104

[Close]

BLAST of Lsi05G004050 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  + I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PQNHDQIQAMIRSYKSHSF----PKQSRNSSYDLQQFFSDRKNKIQL 104
           P     +   +  Y+ HS+    P QS     D  Q +   K+++++
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEI 104

[Close]

BLAST of Lsi05G004050 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 1  MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60
          M R  + L  I N  SR+ TF KRKK LMKK +ELSTLC +  C  I S  D  T+ E W
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYD--TNPEVW 60

Query: 61 PQNHDQIQAMIRSYKS 77
          P N   +Q ++  +++
Sbjct: 61 PSN-SGVQRVVSEFRT 73

[Close]

BLAST of Lsi05G004050 vs. TAIR10
Match: AT5G58890.1 (AT5G58890.1 AGAMOUS-like 82)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-08
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1


Query: 5   ILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TC+ +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PQNHDQIQAMIRSYK---SHSFPKQS----------------------RNSSYDLQQFFS 118
           P++  +++A+IR YK   S S  K++                      R + Y   +   
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

[Close]

BLAST of Lsi05G004050 vs. TAIR10
Match: AT1G77950.1 (AT1G77950.1 AGAMOUS-like 67)

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-08
Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60
           MGR  L LK I    +R+ TF KRKK L+KKAYELSTLCD+   + + S  D    F   
Sbjct: 1   MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query: 61  PQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKIQLKELLAALDSKIGVADGM 120
            +  D +   I      + P Q R ++         ++  IQ KE L     K+ + D M
Sbjct: 61  TRIEDVLARYI------NLPDQERENAIVFPD--QSKRQGIQNKEYLLRTLEKLKIEDDM 112

[Close]

BLAST of Lsi05G004050 vs. TAIR10
Match: AT5G26580.1 (AT5G26580.1 AGAMOUS-like-34)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 1  MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHF 58
          MG   + L LI N  SR T+F+KRK  +MKK YELSTLC VQ C  I S   P   F
Sbjct: 1  MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSPFIPVPEF 57

[Close]

BLAST of Lsi05G004050 vs. NCBI nr
Match: gi|449455824|ref|XP_004145650.1| (PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 2.0e-54
Identity = 132/217 (60.83%), Postives = 152/217 (70.05%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60
           MGRGILSLKLIPN KSRRTTFLKRKKSL+KKAYELSTLCDVQTC+FIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKI------------------Q 120
           P NH QI  MIRSYKSHSF K   NSSYDL +FFSDRKNKI                  Q
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKP--NSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120

Query: 121 LKELLAALDSKIGVADGMIQFMEADYDHLIEEASGISSINIPSFNPFETEQPPKLDLPEL 180
           L ELL ALDSKI VA+ MI+FMEADYDHLI++A G+ +   PS    E E+  + ++ +L
Sbjct: 121 LMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDT--PPS--QTEDEETTQFNVSDL 180

Query: 181 LIGPYGF-EYNVEKF---METDYDHLIVEASEISNID 196
              P  F EYNVE F   +E  +   +V+ + I + D
Sbjct: 181 FNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFD 211

[Close]

BLAST of Lsi05G004050 vs. NCBI nr
Match: gi|659121915|ref|XP_008460878.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ CVF+     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  FETWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKIQLKELLAALDSKIGV 120
             TWP   D++ +MI SYK++   K++R  ++ L  FFS+RK K++        D    V
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRAR-KAFGLIDFFSERKKKVETDMSKLRKD----V 120

Query: 121 ADGMIQFMEADYDHLIEEASGISSINIPS 146
           A+      +   DHL+E+   +  + + S
Sbjct: 121 AEARFTKWDERLDHLLEDQLRVLMMELDS 144

[Close]

BLAST of Lsi05G004050 vs. NCBI nr
Match: gi|778674258|ref|XP_011650173.1| (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ CV +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKIQLKELLAALDSKIGV 120
             TWP + D++  MI SYK++   K+ R  S+ L  FFS+RK K++        D    V
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVR-KSFGLIDFFSERKKKVETDMSKLRKD----V 120

Query: 121 ADGMIQFMEADYDHLIEEASGISSINIPS 146
           ++      +   DHL+E+   +  + + S
Sbjct: 121 SEERFPSWDERLDHLLEDQLRVLMVELDS 144

[Close]

BLAST of Lsi05G004050 vs. NCBI nr
Match: gi|596029901|ref|XP_007219420.1| (hypothetical protein PRUPE_ppa021970mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-15
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K +MKKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKI 102
           TWPQN +Q+  +I  YK+ +  K ++  ++DL     DRKNK+
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAK-KTFDLSDLLMDRKNKV 102

[Close]

BLAST of Lsi05G004050 vs. NCBI nr
Match: gi|694433726|ref|XP_009344134.1| (PREDICTED: agamous-like MADS-box protein AGL14 [Pyrus x bretschneideri])

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-14
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1


Query: 1   MGRGILSLKLIPNLKSRRTTFLKRKKSLMKKAYELSTLCDVQTCVFIASD--CDPSTHFE 60
           MGRG L+++LI N +SR+TTF KR+K +MKKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLNMELIANERSRKTTFQKRRKGIMKKAYEFSTLCEVDVCMIIYGPKLTDRPPELQ 60

Query: 61  TWPQNHDQIQAMIRSYKSHSFPKQSRNSSYDLQQFFSDRKNKI 102
           TWP+N +++  +I  YK+ +  K ++  ++DL     DRKNK+
Sbjct: 61  TWPKNPEEVSRIINKYKASTMCKPAK-KTFDLSDLLMDRKNKV 102

The following BLAST results are available for this feature:

BLAST of Lsi05G004050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL3_ARATH	3.1e-07	34.58	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2	[more]
AGL80_ARATH	4.0e-07	43.42	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1	[more]
AGL82_ARATH	5.3e-07	30.99	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1	[more]
MADS2_ORYSJ	9.0e-07	28.40	MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV...	[more]
AGL9_ARADE	1.5e-06	54.00	Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1	[more]

BLAST of Lsi05G004050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL9_CUCSA	1.4e-54	60.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1	[more]
A0A0A0LME6_CUCSA	1.8e-17	40.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1	[more]
M5X3X5_PRUPE	1.7e-15	45.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1	[more]
A0A059BT66_EUCGR	5.3e-14	47.12	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02794 PE=4 SV=1	[more]
M5XI05_PRUPE	6.9e-14	42.06	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 S...	[more]

BLAST of Lsi05G004050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03710.1	1.7e-08	34.58	K-box region and MADS-box transcription factor family protein	[more]
AT5G48670.1	2.3e-08	43.42	AGAMOUS-like 80	[more]
AT5G58890.1	3.0e-08	30.99	AGAMOUS-like 82	[more]
AT1G77950.1	8.7e-08	35.00	AGAMOUS-like 67	[more]
AT5G26580.1	1.1e-07	52.63	AGAMOUS-like-34	[more]

BLAST of Lsi05G004050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455824\|ref\|XP_004145650.1\|	2.0e-54	60.83	PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus]	[more]
gi\|659121915\|ref\|XP_008460878.1\|	2.3e-18	41.61	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|778674258\|ref\|XP_011650173.1\|	2.5e-17	40.94	PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus]	[more]
gi\|596029901\|ref\|XP_007219420.1\|	2.4e-15	45.63	hypothetical protein PRUPE_ppa021970mg [Prunus persica]	[more]
gi\|694433726\|ref\|XP_009344134.1\|	2.6e-14	43.69	PREDICTED: agamous-like MADS-box protein AGL14 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004050.1	Lsi05G004050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 5.7E-11coord: 23..38 score: 5.7E-11coord: 38..59 score: 5.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..51 score: 1.7
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 3.5
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 17
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..88 score: 3.4
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..89 score: 1.6E-27coord: 119..134 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G004050	Cla007117	Watermelon (97103) v1	lsiwmB363
Lsi05G004050	ClCG05G012100	Watermelon (Charleston Gray)	lsiwcgB332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G004050	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G004050	Watermelon (97103) v2	lsiwmbB329
Lsi05G004050	Wax gourd	lsiwgoB447
Lsi05G004050	Cucumber (Gy14) v1	cgylsiB004
Lsi05G004050	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G004050	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G004050	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G004050	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G004050	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G004050	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G004050	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G004050	Cucumber (Chinese Long) v2	culsiB212
Lsi05G004050	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G004050	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G004050	Melon (DHL92) v3.6.1	lsimedB399
Lsi05G004050	Silver-seed gourd	carlsiB435
Lsi05G004050	Silver-seed gourd	carlsiB700