Lsi05G004010 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G004010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 1
Location	chr05 : 5076641 .. 5078617 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAACAAACAGGTTTTCCCCCCATCTTGCACCACCGCGAATTTCCCGGCGGTCGGCAGAATGTCATCGGAGGTGACAAATCCTTCTTCCTACTTACAATTCAATCCAAACAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCTCTTCAAAGAATAATCAGCGCTCCTGTTCCTTGCTCGGAAAATTTGCTCGATTCATCCTGCCTCACCGTAAGTTCTTCACTATTTTCCTTTAATTTCAGCTAATTTTTCGATTAAGTTTTGATCGTTTAGAATTTCTAATCACATCATATCAATCAATCAATGCAGCAAATTCAACCCTCTTTAGGGTGGGACGTGGATTAGAGAGGGGAGAGGGAAGGGAAGAGAGAGGATGAGAGGAGGTGATGAATATAAAAATAATTTAAAATGAATACATATTTATAACTCATTTAAAATTTGCCAACTCAACACTGCCACATCATTTTTCCGTTAATCAATTAACAGTCAATTTAACACAGGGACCATTTAGACTTATTTTTCCTTTTTTCAACAAATTTTTTATTTGATCTCTAAATTTCAAAAAGTAATAATTTAATCTAGCTTTTAAAAAATAGTATCGTACACTCAATTGATTAACAAAAAGATGTTTTAAAATTCAACTTGAATATTTTTAGCACATCTCTCTCGCTTCTCCTACCCTTCTTCTACTTCCTCCTTTGCTTTGCTTTGCTTGCTTTCATGGAGTTCAAAGCTTTTTCTCCAAAATGAAACAAGTAATTTCCCTCCTATTGAGGCCATTTTCATGGGCTTATGGCCAATACAAATCAGTTGGAAAGGGACTCTTGAAAAGTTGCATTATTAGCCATAAGTCTAGCATGTTGGATCACATTCTGTTTAATTTTATCGTATCGTTTGGTAATTATTTGTTTTTTTTAAAAAAAAATTAAGTCTATCTCCTCTCAACTTCCTACTGTTATTTTCTATCTTTAAAGAAATTGAATTCTTAACCAAATTCTAAAAAAAAACATGTTTTAAAGACTACTTTTTTAGTTTTCAAAACTTAGGTTTGGTTTTTTAAAATAGTGATAGAAATCATATAATAAAACAAGAAATTTAGAGGTGAAAGTGGTGCTTATAGGCTTAATTTTTAAAAGCTAAAAACAAAAAATCAAATAATTACCTAACGAAGCAAAATCGTCCGTTTAAAAACTTAGAGATCAATAAAAAATTGCTTCTATTTGTTTTTAAATTTTGTGTTGTAAAATTTATGAAAACAACAAATACACCCATTGAAAATGTTTTTGTCTATTAACAAATTGAATGTGCTCCAACGAGAGAAAAACTATAGGAGTGCAATAAAAAATCGAAAAATCAAAAATCCAAACAGATTTACTAGTTTCATTTGGTTTTTAAATATAAAATTCGACATATTAATTTGTATTTGGAGAAAACAAAAAAAATATTAGTTTGGATCGATTTTTGATTGAAAAAATCAATCAAAACCGAACCGAACTGAGGGTATAAATATACCCTTAAAAATAAACTATAAATTAGGTACTTATCTTGTAGTATGTTAATTATTATGGTGCATATATATGTATTAGAAAAATAGACCGATTATTATGGAGCATGTAGGTTTTATTATGTAGAAAAGTATCAATAAAAAAACAGAAGAAGAAATAAAAATAAAAATTTGGAAGAAAAAATAAAATGTCAAACATAAAAAAAACTAAACTGATAATAAACCGAAACAAACAAAAACCAATCCATTGGATTTGTTATTTATTGGACATTAGTTTGATTAAAAAATAAGAATGGTGATTAAAAAAACTTAAAACTCACGGAAAACAATTTTCCTAAGATTTGGAACCAAATATTTTCAAACGGTTAAATTTTCTTTTTTAAACTTAAATTAATTCTAATTTCTTTCTCCTAAGTTTTTATGTAAAGTTGCTTAACTTTACGTGA

mRNA sequence

ACAAACAAACAGGTTTTCCCCCCATCTTGCACCACCGCGAATTTCCCGGCGGTCGGCAGAATGTCATCGGAGGTGACAAATCCTTCTTCCTACTTACAATTCAATCCAAACAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCTCTTCAAAGAATAATCAGCGCTCCTGTTCCTTGCTCGGAAAATTTGCTCGATTCATCCTGCCTCACCCACATCTCTCTCGCTTCTCCTACCCTTCTTCTACTTCCTCCTTTGCTTTGCTTTGCTTGCTTTCATGGAGTTCAAAGCTTTTTCTCCAAAATGAAACAATTGCTTAACTTTACGTGA

Coding sequence (CDS)

ACAAACAAACAGGTTTTCCCCCCATCTTGCACCACCGCGAATTTCCCGGCGGTCGGCAGAATGTCATCGGAGGTGACAAATCCTTCTTCCTACTTACAATTCAATCCAAACAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCTCTTCAAAGAATAATCAGCGCTCCTGTTCCTTGCTCGGAAAATTTGCTCGATTCATCCTGCCTCACCCACATCTCTCTCGCTTCTCCTACCCTTCTTCTACTTCCTCCTTTGCTTTGCTTTGCTTGCTTTCATGGAGTTCAAAGCTTTTTCTCCAAAATGAAACAATTGCTTAACTTTACGTGA

Protein sequence

TNKQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRIISAPVPCSENLLDSSCLTHISLASPTLLLLPPLLCFACFHGVQSFFSKMKQLLNFT

Homology

[Close]

BLAST of Lsi05G004010 vs. TrEMBL
Match: A0A0A0K0C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000520 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.4e-28
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 2   NKQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRI 61
           NK+VFPPSCT ANFP+VG MSSE+T+PSSYLQFNPNNQQM SCCGLEMGINTS VAL+R 
Sbjct: 332 NKEVFPPSCTAANFPSVGGMSSEMTDPSSYLQFNPNNQQMDSCCGLEMGINTSHVALRRT 391

Query: 62  ISAPVPCSENLLDSSCLTHISLAS 86
           ISAPV   EN LDSSCLT    +S
Sbjct: 392 ISAPVSFPENFLDSSCLTQFQPSS 415

[Close]

BLAST of Lsi05G004010 vs. TrEMBL
Match: B9H0S2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16330g PE=4 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 6.1e-14
Identity = 53/105 (50.48%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 3   KQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRII 62
           K+ FP +C+T NFPA+G MS ++TN ++YLQFNP  QQ+VSCCGL+MGIN  D+ L+R  
Sbjct: 295 KEAFP-ACST-NFPAIG-MSPDMTN-AAYLQFNPAQQQLVSCCGLDMGINPPDMGLRRTT 354

Query: 63  SAPVPCSENLLDSSCLTHISLASPTLLLLPPLLCFACFHGVQSFF 108
           S PV   E  LDSSC T I         LP L   A   G Q+ F
Sbjct: 355 STPVSIPETFLDSSCFTQIQAPPTWDADLPNLYNVAFDQGRQTTF 395

[Close]

BLAST of Lsi05G004010 vs. TrEMBL
Match: M5VVW1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005829mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.0e-14
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 3   KQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRII 62
           K++FP +C  ANFP +G MSSE+TN S+Y+QFNP  QQMVS CGL+MGIN+SD+AL+R I
Sbjct: 324 KEMFP-ACA-ANFPTIG-MSSEMTN-SAYVQFNPV-QQMVSSCGLDMGINSSDLALRRTI 383

Query: 63  SAPVPCSENLLDSSCLTHISLASPTLL 90
           SAPV   E  LD+SC T    A PT +
Sbjct: 384 SAPVSIPETFLDTSCFTQ---APPTAI 402

[Close]

BLAST of Lsi05G004010 vs. TrEMBL
Match: B9RH53_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447390 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 3   KQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNP--------NNQQMVSCCGLEMGINTS 62
           K+ FPP C T NFPA+G +SS++TNP+ YLQFNP          QQ+V+CCGL+MGIN  
Sbjct: 318 KETFPP-CPT-NFPAIG-LSSDMTNPA-YLQFNPVQQQQQQQQQQQLVTCCGLDMGINNP 377

Query: 63  DVALQRIISAPVPCSENLLDSSCLTHISLAS 86
           D+ ++R ISAPV   E+ +DSSC   I  +S
Sbjct: 378 DMGIRRTISAPVSIPESYIDSSCFNQIQSSS 404

[Close]

BLAST of Lsi05G004010 vs. TrEMBL
Match: A0A067L021_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26804 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.8e-12
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 8   PSCTTANFPAVGRMSSEVTNPSSYLQFNP--------NNQQMVSCCGLEMGINT-SDVAL 67
           P+C T NFP +G MSS++TNP+ YLQFNP          QQ+V+CCGL++GIN  SD+ L
Sbjct: 311 PACVT-NFPTIG-MSSDMTNPA-YLQFNPVQQQQQHQQQQQLVTCCGLDIGINNPSDIVL 370

Query: 68  QRIISAPVPCSENLLDSSCLTHISLAS 86
           +R ISAP+   E  +DSSC T I  +S
Sbjct: 371 RRTISAPISMPEMFVDSSCFTQIQPSS 394

[Close]

BLAST of Lsi05G004010 vs. NCBI nr
Match: gi|659094487|ref|XP_008448085.1| (PREDICTED: uncharacterized protein LOC103490373 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 3.7e-28
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 2   NKQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRI 61
           NK+VFPPSCT ANFPA+G MSSE+T+PSSYLQFNPNNQQM SCCGLEMGINTS VAL+R 
Sbjct: 502 NKEVFPPSCTAANFPAIGGMSSEMTDPSSYLQFNPNNQQMDSCCGLEMGINTSHVALRRT 561

Query: 62  ISAPVPCSENLLDSSCLTHISLAS 86
           ISAPV   EN LDSSCLT    +S
Sbjct: 562 ISAPVSFPENFLDSSCLTQFQPSS 585

[Close]

BLAST of Lsi05G004010 vs. NCBI nr
Match: gi|778722655|ref|XP_011658545.1| (PREDICTED: transcription factor bHLH63-like [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 6.3e-28
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 2   NKQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRI 61
           NK+VFPPSCT ANFP+VG MSSE+T+PSSYLQFNPNNQQM SCCGLEMGINTS VAL+R 
Sbjct: 332 NKEVFPPSCTAANFPSVGGMSSEMTDPSSYLQFNPNNQQMDSCCGLEMGINTSHVALRRT 391

Query: 62  ISAPVPCSENLLDSSCLTHISLAS 86
           ISAPV   EN LDSSCLT    +S
Sbjct: 392 ISAPVSFPENFLDSSCLTQFQPSS 415

[Close]

BLAST of Lsi05G004010 vs. NCBI nr
Match: gi|566166838|ref|XP_002305434.2| (hypothetical protein POPTR_0004s16330g [Populus trichocarpa])

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-14
Identity = 53/105 (50.48%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 3   KQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRII 62
           K+ FP +C+T NFPA+G MS ++TN ++YLQFNP  QQ+VSCCGL+MGIN  D+ L+R  
Sbjct: 295 KEAFP-ACST-NFPAIG-MSPDMTN-AAYLQFNPAQQQLVSCCGLDMGINPPDMGLRRTT 354

Query: 63  SAPVPCSENLLDSSCLTHISLASPTLLLLPPLLCFACFHGVQSFF 108
           S PV   E  LDSSC T I         LP L   A   G Q+ F
Sbjct: 355 STPVSIPETFLDSSCFTQIQAPPTWDADLPNLYNVAFDQGRQTTF 395

[Close]

BLAST of Lsi05G004010 vs. NCBI nr
Match: gi|595792231|ref|XP_007199864.1| (hypothetical protein PRUPE_ppa005829mg [Prunus persica])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 3   KQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNPNNQQMVSCCGLEMGINTSDVALQRII 62
           K++FP +C  ANFP +G MSSE+TN S+Y+QFNP  QQMVS CGL+MGIN+SD+AL+R I
Sbjct: 324 KEMFP-ACA-ANFPTIG-MSSEMTN-SAYVQFNPV-QQMVSSCGLDMGINSSDLALRRTI 383

Query: 63  SAPVPCSENLLDSSCLTHISLASPTLL 90
           SAPV   E  LD+SC T    A PT +
Sbjct: 384 SAPVSIPETFLDTSCFTQ---APPTAI 402

[Close]

BLAST of Lsi05G004010 vs. NCBI nr
Match: gi|255543699|ref|XP_002512912.1| (PREDICTED: transcription factor bHLH63 [Ricinus communis])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 3   KQVFPPSCTTANFPAVGRMSSEVTNPSSYLQFNP--------NNQQMVSCCGLEMGINTS 62
           K+ FPP C T NFPA+G +SS++TNP+ YLQFNP          QQ+V+CCGL+MGIN  
Sbjct: 318 KETFPP-CPT-NFPAIG-LSSDMTNPA-YLQFNPVQQQQQQQQQQQLVTCCGLDMGINNP 377

Query: 63  DVALQRIISAPVPCSENLLDSSCLTHISLAS 86
           D+ ++R ISAPV   E+ +DSSC   I  +S
Sbjct: 378 DMGIRRTISAPVSIPESYIDSSCFNQIQSSS 404

The following BLAST results are available for this feature:

BLAST of Lsi05G004010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G004010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K0C8_CUCSA	4.4e-28	77.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000520 PE=4 SV=1	[more]
B9H0S2_POPTR	6.1e-14	50.48	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16330g PE=4 SV=2	[more]
M5VVW1_PRUPE	8.0e-14	59.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005829mg PE=4 SV=1	[more]
B9RH53_RICCO	1.8e-13	51.65	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447390 PE=4 SV=1	[more]
A0A067L021_JATCU	9.8e-12	51.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26804 PE=4 SV=1	[more]

BLAST of Lsi05G004010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G004010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094487\|ref\|XP_008448085.1\|	3.7e-28	77.38	PREDICTED: uncharacterized protein LOC103490373 [Cucumis melo]	[more]
gi\|778722655\|ref\|XP_011658545.1\|	6.3e-28	77.38	PREDICTED: transcription factor bHLH63-like [Cucumis sativus]	[more]
gi\|566166838\|ref\|XP_002305434.2\|	8.8e-14	50.48	hypothetical protein POPTR_0004s16330g [Populus trichocarpa]	[more]
gi\|595792231\|ref\|XP_007199864.1\|	1.1e-13	59.77	hypothetical protein PRUPE_ppa005829mg [Prunus persica]	[more]
gi\|255543699\|ref\|XP_002512912.1\|	2.6e-13	51.65	PREDICTED: transcription factor bHLH63 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004010.1	Lsi05G004010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 21..79 score: 1.2
None	No IPR available	PANTHER	PTHR12565:SF149	SUBFAMILY NOT NAMED	coord: 21..79 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G004010	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G004010	Watermelon (97103) v2	lsiwmbB329
Lsi05G004010	Wax gourd	lsiwgoB447
Lsi05G004010	Cucumber (Gy14) v1	cgylsiB004
Lsi05G004010	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G004010	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G004010	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G004010	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G004010	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G004010	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G004010	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G004010	Cucumber (Chinese Long) v2	culsiB212
Lsi05G004010	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G004010	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G004010	Watermelon (97103) v1	lsiwmB363
Lsi05G004010	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G004010	Melon (DHL92) v3.6.1	lsimedB399
Lsi05G004010	Silver-seed gourd	carlsiB435
Lsi05G004010	Silver-seed gourd	carlsiB700