Lsi05G003930 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G003930
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 4977632 .. 4978118 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGACGTAACAAAAATTTAACCGAGAGTAAAAAAAAAAGTTACCTTAGAGAGGAGGCAGATGAGCGACTGAACGTGATTCCTGGCAATATTATCCCCCACAAACGCAAACGCCTTATGCCTCATCAGCTCCAGAAACTGCGCCGGATTAAATCCCGGCAGCTCGCACCCCTCCGGCCGCCACCTCCACCGGAGGAAGCCGGCATCGGGGCGACCGTACTTAAGGCAGTTGAGATGGTCGTGAATCGCCCAGCAGGTATCATTTGTGTAGGGGAGAGCGGCGTTAGGGTTGGAATTAGGGATCCAATCGCCGATGGCGAGATCGCAGGGGAGGGCGGAAAGAATGGAGAGATTTCCGGAGGTGAAGATTTGGGGACGGAAGGCGGCGGAAGCGGCGGCGGCAGGGGATTCGAGAGAGGTTTTGAGGAGGAGGAGGGAGTAATTGAGGAGAGGGAAAGAGAGGGGGATGGTTGTGAGGATCAATAG

mRNA sequence

ATGTGGACTTACCTTAGAGAGGAGGCAGATGAGCGACTGAACGTGATTCCTGGCAATATTATCCCCCACAAACGCAAACGCCTTATGCCTCATCAGCTCCAGAAACTGCGCCGGATTAAATCCCGGCAGCTCGCACCCCTCCGGCCGCCACCTCCACCGGAGGAAGCCGGCATCGGGGCGACCGTACTTAAGGCAGTTGAGATGGTCGTGAATCGCCCAGCAGGTATCATTTGTGTAGGGGAGAGCGGCGTTAGGGTTGGAATTAGGGATCCAATCGCCGATGGCGAGATCGCAGGGGAGGGCGGAAAGAATGGAGAGATTTCCGGAGGTGAAGATTTGGGGACGGAAGGCGGCGGAAGCGGCGGCGGCAGGGGATTCGAGAGAGGTTTTGAGGAGGAGGAGGGAGTAATTGAGGAGAGGGAAAGAGAGGGGGATGGTTGTGAGGATCAATAG

Coding sequence (CDS)

ATGTGGACTTACCTTAGAGAGGAGGCAGATGAGCGACTGAACGTGATTCCTGGCAATATTATCCCCCACAAACGCAAACGCCTTATGCCTCATCAGCTCCAGAAACTGCGCCGGATTAAATCCCGGCAGCTCGCACCCCTCCGGCCGCCACCTCCACCGGAGGAAGCCGGCATCGGGGCGACCGTACTTAAGGCAGTTGAGATGGTCGTGAATCGCCCAGCAGGTATCATTTGTGTAGGGGAGAGCGGCGTTAGGGTTGGAATTAGGGATCCAATCGCCGATGGCGAGATCGCAGGGGAGGGCGGAAAGAATGGAGAGATTTCCGGAGGTGAAGATTTGGGGACGGAAGGCGGCGGAAGCGGCGGCGGCAGGGGATTCGAGAGAGGTTTTGAGGAGGAGGAGGGAGTAATTGAGGAGAGGGAAAGAGAGGGGGATGGTTGTGAGGATCAATAG

Protein sequence

MWTYLREEADERLNVIPGNIIPHKRKRLMPHQLQKLRRIKSRQLAPLRPPPPPEEAGIGATVLKAVEMVVNRPAGIICVGESGVRVGIRDPIADGEIAGEGGKNGEISGGEDLGTEGGGSGGGRGFERGFEEEEGVIEEREREGDGCEDQ
Homology
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BLAST of Lsi05G003930 vs. TrEMBL
Match: A0A0A9L022_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-08
Identity = 37/95 (38.95%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 4   YLREEADERLNVIPGNIIPHKRKRLMPHQLQKLRRIKSRQLAPLRPPPPPEEAGIGATVL 63
           YLREEA++ L+V+    +P + +R    +L++L+ +++RQLAP R PPP EE  +GA VL
Sbjct: 44  YLREEAEQGLHVVASQRVPDEGERPAADELEELQWVEARQLAPGRAPPPLEEPQVGAPVL 103

Query: 64  KAVEMVVNRPAGIICVGESGVRVGIRDPIADGEIA 99
           +AV +++++ A ++ V     R+G+R P+A  ++A
Sbjct: 104 EAVLVLLDQRARLVVVVG---RLGVRHPLAAEDVA 135

The following BLAST results are available for this feature:
BLAST of Lsi05G003930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G003930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9L022_ARUDO2.9e-0838.95Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of Lsi05G003930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G003930 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G003930.1Lsi05G003930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G003930Cla007107Watermelon (97103) v1lsiwmB363
Lsi05G003930ClCG05G011960Watermelon (Charleston Gray)lsiwcgB332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G003930Melon (DHL92) v3.5.1lsimeB368
Lsi05G003930Cucumber (Gy14) v2cgyblsiB199
Lsi05G003930Melon (DHL92) v3.6.1lsimedB399
Lsi05G003930Silver-seed gourdcarlsiB435
Lsi05G003930Silver-seed gourdcarlsiB700
Lsi05G003930Cucumber (Chinese Long) v3cuclsiB231
Lsi05G003930Watermelon (97103) v2lsiwmbB329
Lsi05G003930Wax gourdlsiwgoB447
Lsi05G003930Cucumber (Gy14) v1cgylsiB004
Lsi05G003930Cucurbita maxima (Rimu)cmalsiB249
Lsi05G003930Cucurbita maxima (Rimu)cmalsiB440
Lsi05G003930Cucurbita moschata (Rifu)cmolsiB237
Lsi05G003930Cucurbita moschata (Rifu)cmolsiB430
Lsi05G003930Cucurbita pepo (Zucchini)cpelsiB470
Lsi05G003930Cucurbita pepo (Zucchini)cpelsiB511
Lsi05G003930Wild cucumber (PI 183967)cpilsiB210
Lsi05G003930Cucumber (Chinese Long) v2culsiB212