Lsi05G003880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Conserved peptide upstream open reading frame 11
Location	chr05 : 4902304 .. 4902683 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGACTTCTCTGATATCATTTTGGGGTGCTACCTCTATCTATGCAGCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACGTCAGACCACACGGTGGAATCAAGAAGTTCAGATCAGCTGCTTACTCCAACGTATGTTCCTACTTCTTACACTGTCATGTTTGTTGTTTTAGTTTATCATTAGTGTGTTGGCTAATGACTAATCTTCTTTTTCTAAATCTTTTGCAGTGCGTTCGAAAGCCATCCTGAGTTTTGCTGAATTCCGTTTACCCTGCGCCCCAGGATCCTTAGTTTCGTTATAA

mRNA sequence

ATGGTTGAGACTTCTCTGATATCATTTTGGGGTGCTACCTCTATCTATGCAGCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACGTCAGACCACACGGTGGAATCAAGAAGTTCAGATCAGCTGCTTACTCCAACGTATTGCGTTCGAAAGCCATCCTGAGTTTTGCTGAATTCCGTTTACCCTGCGCCCCAGGATCCTTAGTTTCGTTATAA

Coding sequence (CDS)

ATGGTTGAGACTTCTCTGATATCATTTTGGGGTGCTACCTCTATCTATGCAGCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACGTCAGACCACACGGTGGAATCAAGAAGTTCAGATCAGCTGCTTACTCCAACGTATTGCGTTCGAAAGCCATCCTGAGTTTTGCTGAATTCCGTTTACCCTGCGCCCCAGGATCCTTAGTTTCGTTATAA

Protein sequence

MVETSLISFWGATSIYAANDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLRSKAILSFAEFRLPCAPGSLVSL

Homology

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BLAST of Lsi05G003880 vs. TrEMBL
Match: A0A0A0LAP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271350 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.9e-19
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 15 IYAANDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLR 74
          ++ ANDLMESKGGKKK SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN +R
Sbjct: 32 VFIANDLMESKGGKKK-SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVR 89

[Close]

BLAST of Lsi05G003880 vs. TrEMBL
Match: A0A059ADW4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J01448 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1


Query: 19  NDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLRS 75
           N+LMESKGGKKKSS    SSKSLFYEAPLGYSIED+RPHGGIKKFRSAAYSNV R+
Sbjct: 78  NELMESKGGKKKSS----SSKSLFYEAPLGYSIEDLRPHGGIKKFRSAAYSNVCRN 129

[Close]

BLAST of Lsi05G003880 vs. TrEMBL
Match: A7Y7H5_PRUDU (Putative S-adenosylmethionine decarboxylase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 19 NDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLR 74
          N+LMESKGGKKKSS    SSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN +R
Sbjct: 3  NELMESKGGKKKSS----SSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVR 53

[Close]

BLAST of Lsi05G003880 vs. TrEMBL
Match: A0A151QZ93_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_043309 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-16
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 19 NDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 72
          N+LMESKGGKKKSSSS  SSKSLFYEAPLGYSIED+RP+GGIKKFRSAAYSNV
Sbjct: 4  NELMESKGGKKKSSSS--SSKSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSNV 54

[Close]

BLAST of Lsi05G003880 vs. TrEMBL
Match: A0A067F6R2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g043845mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-16
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 19 NDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLR 74
          NDLMESKGGKKKSSSSS     LFYEAPLGYSIEDVRPHGGIKKFRSAAYSN +R
Sbjct: 4  NDLMESKGGKKKSSSSS-----LFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVR 53

[Close]

BLAST of Lsi05G003880 vs. TAIR10
Match: AT3G02468.1 (AT3G02468.1 conserved peptide upstream open reading frame 9)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 21 LMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 71
          +MESKGGKKKSSSSSS    LFYEAPLGYSIEDVRP+GGIKKF+S+ YSN
Sbjct: 1  MMESKGGKKKSSSSSS----LFYEAPLGYSIEDVRPNGGIKKFKSSVYSN 46

[Close]

BLAST of Lsi05G003880 vs. TAIR10
Match: AT3G25572.1 (AT3G25572.1 conserved peptide upstream open reading frame 11)

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-15
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1


Query: 22 MESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 72
          ME+KGGKKKSS+SSS   SLF+EAPL YSIEDVRP+GGIKKFRSAAYSN+
Sbjct: 1  METKGGKKKSSNSSSRD-SLFFEAPLRYSIEDVRPNGGIKKFRSAAYSNI 49

[Close]

BLAST of Lsi05G003880 vs. TAIR10
Match: AT5G15948.1 (AT5G15948.1 conserved peptide upstream open reading frame 10)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 22 MESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 71
          MESK G KKSSS+SS    L YEAPLGYSIEDVRP GGIKKF+S+ YSN
Sbjct: 1  MESKAGNKKSSSNSS----LCYEAPLGYSIEDVRPFGGIKKFKSSVYSN 45

[Close]

BLAST of Lsi05G003880 vs. NCBI nr
Match: gi|700202609|gb|KGN57742.1| (hypothetical protein Csa_3G271350 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-19
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 15 IYAANDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLR 74
          ++ ANDLMESKGGKKK SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN +R
Sbjct: 32 VFIANDLMESKGGKKK-SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVR 89

[Close]

BLAST of Lsi05G003880 vs. NCBI nr
Match: gi|802655768|ref|XP_012080511.1| (PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like isoform X3 [Jatropha curcas])

HSP 1 Score: 95.9 bits (237), Expect = 4.0e-17
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 22 MESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLRSKAI 78
          MESKGGKKKSSSSSSSSKSLFYEAPLGYSIED+RP+GGIKKFRSAAYSN  R  +I
Sbjct: 1  MESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPSI 56

[Close]

BLAST of Lsi05G003880 vs. NCBI nr
Match: gi|802655764|ref|XP_012080510.1| (PREDICTED: uncharacterized protein LOC105640725 isoform X2 [Jatropha curcas])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 22 MESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLR 74
          MESKGGKKKSSSSSSSSKSLFYEAPLGYSIED+RP+GGIKKFRSAAYSN  R
Sbjct: 1  MESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSNCAR 52

[Close]

BLAST of Lsi05G003880 vs. NCBI nr
Match: gi|778680663|ref|XP_011651368.1| (PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine decarboxylase proenzyme-like [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-16
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 22 MESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLRSKAILS 80
          MESKGGKKK SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN +R  + ++
Sbjct: 1  MESKGGKKK-SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPSXMT 57

[Close]

BLAST of Lsi05G003880 vs. NCBI nr
Match: gi|629085651|gb|KCW52008.1| (hypothetical protein EUGRSUZ_J01448, partial [Eucalyptus grandis])

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-16
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1


Query: 19  NDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVLRS 75
           N+LMESKGGKKKSS    SSKSLFYEAPLGYSIED+RPHGGIKKFRSAAYSNV R+
Sbjct: 78  NELMESKGGKKKSS----SSKSLFYEAPLGYSIEDLRPHGGIKKFRSAAYSNVCRN 129

The following BLAST results are available for this feature:

BLAST of Lsi05G003880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAP2_CUCSA	3.9e-19	89.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271350 PE=4 SV=1	[more]
A0A059ADW4_EUCGR	2.4e-16	85.71	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J01448 PE=4 ...	[more]
A7Y7H5_PRUDU	3.1e-16	87.27	Putative S-adenosylmethionine decarboxylase (Fragment) OS=Prunus dulcis PE=2 SV=...	[more]
A0A151QZ93_CAJCA	4.1e-16	90.57	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_043309 PE=4 SV=1	[more]
A0A067F6R2_CITSI	5.3e-16	87.27	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g043845mg PE=4 S...	[more]

BLAST of Lsi05G003880 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02468.1	1.4e-15	82.00	conserved peptide upstream open reading frame 9	[more]
AT3G25572.1	4.0e-15	82.00	conserved peptide upstream open reading frame 11	[more]
AT5G15948.1	1.4e-12	75.51	conserved peptide upstream open reading frame 10	[more]

BLAST of Lsi05G003880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202609\|gb\|KGN57742.1\|	5.6e-19	89.83	hypothetical protein Csa_3G271350 [Cucumis sativus]	[more]
gi\|802655768\|ref\|XP_012080511.1\|	4.0e-17	87.50	PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like isoform X3 [Jatroph...	[more]
gi\|802655764\|ref\|XP_012080510.1\|	1.2e-16	92.31	PREDICTED: uncharacterized protein LOC105640725 isoform X2 [Jatropha curcas]	[more]
gi\|778680663\|ref\|XP_011651368.1\|	2.6e-16	84.48	PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine decarboxylase proenzyme-lik...	[more]
gi\|629085651\|gb\|KCW52008.1\|	3.4e-16	85.71	hypothetical protein EUGRSUZ_J01448, partial [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012511	AdoMetDC_leader

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003880.1	Lsi05G003880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 22..73 score: 1.4
None	No IPR available	PANTHER	PTHR35727	FAMILY NOT NAMED	coord: 22..76 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003880	Csa3G271350	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003880	CSPI03G20570	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003880	MELO3C023786	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003880	ClCG05G011880	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003880	MELO3C023786.2	Melon (DHL92) v3.6.1	lsimedB399
Lsi05G003880	Bhi01G001455	Wax gourd	lsiwgoB447
Lsi05G003880	CsGy3G020270	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003880	Carg22276	Silver-seed gourd	carlsiB435
Lsi05G003880	CsaV3_3G020550	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003880	Cucumber (Gy14) v1	cgylsiB004
Lsi05G003880	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003880	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003880	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003880	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003880	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003880	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003880	Watermelon (97103) v1	lsiwmB363
Lsi05G003880	Silver-seed gourd	carlsiB700
Lsi05G003880	Watermelon (97103) v2	lsiwmbB329