Lsi05G003710 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 4686831 .. 4690347 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGATGCCCATATTTTTGCTTTTCCTCCTTCCTAAATATGAATAGTATTCGTCCGCTGCCTGCTGCCACCGACAAAACCAGCAACGGCAATGGCTGCAGCGGCGCTAATGATTCCAGCCGCCGTGACGATGATGATTCTGCTGATCAATCCAACGGCTTACGATACTCTTACATCTTTCGAGCCATTTCTCTACGACACTTCTCGTGAGTTTGAAGTAACTTTTGACATGAAATTTCTACAAATATTTGCTTTTTCTTACAATTTACTGTAAATATGTTAATATGTTAAGACATAATATTAAATTTATTTGCGTCAACAGGTGATTTAGATACCAGAGTAGAAAGTCATTTGTTCAAACTTTTTAATATTATTTTCTCCAAAAATAATATTGATTAATTTTTTGTGGAGTTATTCATTTACTTGTACTTTTTAGAACCTACTTTCAATTTTTGTTTATTTTGATTTTTATATCTGGAAGATCTTCAGTATTAATTAATTAGTTTTTGCACTTTTCAATTTATGTCCAATAGTTTTTAAAGTTTAAAAATGTTTAATAGATATATAAATTTTAAATTTGTATCTAATAACACTCTAAACTTTTATTTATTTCTTAGCAAATGTTGAAAAGTTAGTGCGGATTATTAGTCAGAAGAACACCCAAACAGAACACAATTGCCAGCAGTAAATCAAAGCAATAAGAATAAAATAGAGACACAAAGAATTTATAGTAGTTCGATCAATTTGATCTACATCCACCTTGAGAACCAGCTTGATATTGATTTTATTAAGAACTAAAGAGTTACAAAATTACAGAAATAATCAAGATTAATATGAATCTGTAATTTTTCTTCAAGAACAGCAAAATCCACGATTCCTTCTTGTCTCTTGACCGAGACCAATCGCTAGAGCAATACCGCCTAATACCGACTTTACCGCCGATACTAAAACCCACAGATCTGAGAGACACACACCGCAAACCGAACGTCAATCCGGAATCACCCACGCTAAAACGCTGATCCGGAATCCAACGAACACCCACACCGTGACTGTCTTAGATCCAATCTCAGTTCCGACGACGACGAGCCACACACGCTGGCAGCGACCCACGCTGACCGGCACTGCAAGACTCACACCAATCGACCGCTGGCAACGACCCACGCTGATTGGCAGTCTCGGCTGAACTCTCTCTCTCTTCTGCGTTTTTGGTGTTTCACGGCAGCCGCTTGCTTTTTCTTTCCCATCTTCTTCTATTTATATGATAACATAATAAAGCTCTAAAAGAAAGAAGATGATAGGATTTACAATAATGCCATCAAGCATTATTTACCATATTGCGGTTAATAAAAAACTTATTTAAATAATTTTTTTATTTTTAACAGCAAAGTTAGTAAATTTTAGAAAATGTCAAATAGTTTGATGACGACCTATTAGACACAATATCAAAAAATTAAAAACCTAATAAGATACAAAATTGAAAAGTTTTAATGTTATTTTGGTTCCCTATTATTGGCTTTTTGGTTCATTTTGATGTATATACGCTTTCAAAATATTGAATTTGGAACTTATATAGTTTCATATTTTGTTAATTCAGTTTTGGTCTCTATATCATACTTAAAAAATTTTAACATAATTTTTCTAAAAAAAATTAAAAATAAAAATTAAAAAACCAAAATGGTAGAAATCAAATTGAAATTAAAAGTACAAAGTCTAAAATAGTATTAATTAAACTAAATTGAAACGTTAGGGATAGACACTTTAATTTAAAGGGACGTAACTTCGATAATTGTATGAATCAAATAGACACAGATGTGAAAGATAAGTGGATGAAAATTATAACCCAAATGGAATATAGAATAAGAGTGTCCCCATTGTTATATTGTTGGTTATGGACTGACAGGTGCCAGAAAATACCTCGTCGGAGAGCAAGATATGGAGTTGGAGTTTCTGATGGAATCGTACATCAGTTGGTTCTTAGCGGGCTCTCAAAATTCTGTAACCGACACCACTAAGGAAGCTAAGAAAGCTGTTGACGGCGGTTGCAATCGGTCGGCAACGCTCTACCGCAGTCGTCTTGGTCACCCGAATACAAATAACCGGCCCCCGAGACATTGTGGCATCTACAGTCACAAAAATCCTTGTTTAAGAAAATAACACCAAAATATGGTATACATTTACAACTTCTCTATTGACTATTTTTACCATTTGTATAATTTCTTCGGTCAAATCTTTACCATTAATAAAGCCTAATGAAAAAAAAAAAAACTTGGTGATCATTCTCGTAGAAAATATTGTTTATTTTCCTCTACTTCTGAAGTATTATAATAAGTCTGTTATTCAGTTAAGAGTTGTAGTTAATATAGTTGTTTTCTTCTTCTATATAAAGGCTCTTAGTCTTTAGTTGTGGGGATGAGAGGCGTAAAACAGAGAGTGTGTTAAGAAGTAAAACTCTACTGGAGTACTGTGTAAAATCATCACATCAGCAATCAAATATACTGCTCATTTCTTCCCGTGGATGTAAGTCTTATGACTGAACCACGTTAAAACATTTGTCTTCACTGTTCTTTCGTCTGCTCTTCTTTTCTTGTTTGTTTGTCTACTGCTTGAGTGTTCTTTGAAGGATAGTTTTTGTTAGTGTTCATCATTTTTCCTTCTTTCTCCACAACAAATTGGTATCAGAGCTTCTTAAAGACTTCAAAGAGAGATCTTAAAGATATAAAATCTTGATCTTGATAATCAAGAAGATGGCAGTCGCACGATATGATATAGAAAAATTTGATGGAAAAGGAGATTATACTCTGTGGAAAGCAAAGATCAGAGCCATCCTCGGTCATCAGAAGGCTCTAAAAGCTCTTGCTGATCCCTCCTCACTTCCCACGAATATGACAACTGAAGAAAAAGAAAACATGGAAATCTTAGCATATGGAACCTTAGTTTTAAACCTTAGTGATAATGTCCTAAGAGAGGTAATTGATCAAGAAACAGCCTACAAAATATGGGTAAAGCTTGACAAACTATACCTAACCAAAGATCTTCCAAGTAGAGCTTTCTTGAGAGAAATTTTTTTTACTTACAAGATGGATGCAGAGAAGTCATTGACAGACAACCTAAGTGACTTCAAGAAGCTGTCATCTTCTTTCAAAACTCTTGGAGATAAAATAGGGGATGAAAATGAATCATTCATTTTATTAAATTCTCTTCCAGAGGCTTATAAAGAAGTTAAGACTGTTGGCTTTTTGGCCCTTAATATCAAATTAATTAATTTTAATTAAATAATTAATGTTTTGATGATAACAAACCTGTTTTTTATTAACAATTTTAGTGTTTTGAAGTGTCCATTGTGTAGAACTTGGAACAACGGTTCCAATGCAATTTGAATCACTCAAATCGGAGTTCAAACGAAGAAGATATGACTGGAACAAGCTTAACAGAAAAATACCCGATGTCGATGACGTGGCGGCCAAATCATCAAAGGGGACCTACTAGAGGATGACAAGTGGAGAAATAGATAAGTGAC

mRNA sequence

CAAAGATGCCCATATTTTTGCTTTTCCTCCTTCCTAAATATGAATAGTATTCGTCCGCTGCCTGCTGCCACCGACAAAACCAGCAACGGCAATGGCTGCAGCGGCGCTAATGATTCCAGCCGCCGTGACGATGATGATTCTGCTGATCAATCCAACGGCTTACGATACTCTTACATCTTTCGAGCCATTTCTCTACGACACTTCTCGTGCCAGAAAATACCTCGTCGGAGAGCAAGATATGGAGTTGGAGTTTCTGATGGAATCGTACATCAGTTGGTTCTTAGCGGGCTCTCAAAATTCTGTAACCGACACCACTAAGGAAGCTAAGAAAGCTGTTGACGGCGGTTGCAATCGGTCGGCAACGCTCTACCGCAGTCGTCTTGGTCACCCGAATACAAATAACCGGCCCCCGAGACATTGTGGCATCTACAGTCACAAAAATCCTTGTTTAAGAAAATAACACCAAAATATGTGTCCATTGTGTAGAACTTGGAACAACGGTTCCAATGCAATTTGAATCACTCAAATCGGAGTTCAAACGAAGAAGATATGACTGGAACAAGCTTAACAGAAAAATACCCGATGTCGATGACGTGGCGGCCAAATCATCAAAGGGGACCTACTAGAGGATGACAAGTGGAGAAATAGATAAGTGAC

Coding sequence (CDS)

ATGGCTGCAGCGGCGCTAATGATTCCAGCCGCCGTGACGATGATGATTCTGCTGATCAATCCAACGGCTTACGATACTCTTACATCTTTCGAGCCATTTCTCTACGACACTTCTCGTGCCAGAAAATACCTCGTCGGAGAGCAAGATATGGAGTTGGAGTTTCTGATGGAATCGTACATCAGTTGGTTCTTAGCGGGCTCTCAAAATTCTGTAACCGACACCACTAAGGAAGCTAAGAAAGCTGTTGACGGCGGTTGCAATCGGTCGGCAACGCTCTACCGCAGTCGTCTTGGTCACCCGAATACAAATAACCGGCCCCCGAGACATTGTGGCATCTACAGTCACAAAAATCCTTGTTTAAGAAAATAA

Protein sequence

MAAAALMIPAAVTMMILLINPTAYDTLTSFEPFLYDTSRARKYLVGEQDMELEFLMESYISWFLAGSQNSVTDTTKEAKKAVDGGCNRSATLYRSRLGHPNTNNRPPRHCGIYSHKNPCLRK

Homology

[Close]

BLAST of Lsi05G003710 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-18
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 1   MAAAALMIPAAVTMMILLIN-PTAYDTLTSFEPFLYD-TSRARKYLVGEQDMELEFLMES 60
           M A+ALMIPAAV  MILL++ P++ D LT+F+P L + +S   K ++GE+DMELEFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  YISWFLAGSQNSVTDTTKEAKKAVDGGCNRSATLYRSRLGHPNTNNRPPRHCGIYSHKNP 120
           +IS  LA S+N  T +T  A KA  GGC+R    Y S LG    NN PP +C  Y+  NP
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPR-YDSCLG-KKRNNPPPPNCSPYNRANP 119

[Close]

BLAST of Lsi05G003710 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-11
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 1


Query: 3   AAALMIPAAVTMMILLINPTAYD-TLTSFEPFLYDTSRAR-KYLVGEQDMELEFLMESYI 62
           A ALMIPAA+ MM++++ PTA    LTSF+P    TS    KY+V E+D++  F+MES+I
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SWFLAGSQNSVTDTTKEAKKAVDGGCNRSATLYRSRLGHPNTNNRPPRHCGIYSHKNPC 120
           S  LA SQ+  T +T  A +   G C+R    Y S LG    N  PP++C  ++ ++PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPR-YDSCLG-VKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Lsi05G003710 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 1   MAAAALMIPAAVTMMILLIN-PTAYDTLTSFEPFLYD-TSRARKYLVGEQDMELEFLMES 60
           M A+ALMIPAAV  MILL++ P++ D LT+F+P L + +S   K ++GE+DMELEFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  YISWFLAGSQNSVTDTTKEAKKAVDGGCNRSATLYRSRLGHPNTNNRPPRHCGIYSHKNP 120
           +IS  LA S+N  T +T  A KA  GGC+R    Y S LG    NN PP +C  Y+  NP
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPR-YDSCLG-KKRNNPPPPNCSPYNRANP 119

[Close]

BLAST of Lsi05G003710 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 1


Query: 3   AAALMIPAAVTMMILLINPTAYD-TLTSFEPFLYDTSRAR-KYLVGEQDMELEFLMESYI 62
           A ALMIPAA+ MM++++ PTA    LTSF+P    TS    KY+V E+D++  F+MES+I
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SWFLAGSQNSVTDTTKEAKKAVDGGCNRSATLYRSRLGHPNTNNRPPRHCGIYSHKNPC 120
           S  LA SQ+  T +T  A +   G C+R    Y S LG    N  PP++C  ++ ++PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPR-YDSCLG-VKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Lsi05G003710 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 9.8e-08
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1


Query: 3   AAALMIPAAVTMMILLINPTAY-DTLTSFEPFLYDTS--RARKYLVGEQDMELEFLMESY 62
           A A+MIPAAV MMI+++ PTA     T F+P    TS    R  +V E+D +  F+MES+
Sbjct: 4   APAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGGLVRYNMVEEEDTKSNFVMESH 63

Query: 63  ISWFLA-GSQNSVTDTTKEAKKAVDGGCNRSATLYRSRLGHPNTNNRPPRHCGIYSHKNP 120
           IS  LA  SQ+  T +T  A +   G C+R    Y S LG    N  PP++C  Y+ ++P
Sbjct: 64  ISRMLADSSQDFETSSTNNATQVSTGECDRPPR-YDSCLG-DKRNTPPPQNCSTYNREHP 122

The following BLAST results are available for this feature:

BLAST of Lsi05G003710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCJ4_CUCSA	9.5e-18	52.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	8.6e-11	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]

BLAST of Lsi05G003710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202648\|gb\|KGN57781.1\|	1.4e-17	52.07	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	1.2e-10	42.86	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	9.8e-08	41.32	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003710.1	Lsi05G003710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003710	Cucumber (Gy14) v1	cgylsiB004
Lsi05G003710	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003710	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003710	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003710	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003710	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003710	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003710	Wild cucumber (PI 183967)	cpilsiB203
Lsi05G003710	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003710	Cucumber (Chinese Long) v2	culsiB206
Lsi05G003710	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003710	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003710	Melon (DHL92) v3.5.1	lsimeB385
Lsi05G003710	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003710	Watermelon (97103) v1	lsiwmB361
Lsi05G003710	Cucumber (Gy14) v2	cgyblsiB190
Lsi05G003710	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003710	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003710	Melon (DHL92) v3.6.1	lsimedB406
Lsi05G003710	Silver-seed gourd	carlsiB435
Lsi05G003710	Silver-seed gourd	carlsiB700
Lsi05G003710	Cucumber (Chinese Long) v3	cuclsiB225
Lsi05G003710	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G003710	Watermelon (97103) v2	lsiwmbB329
Lsi05G003710	Wax gourd	lsiwgoB447