Lsi05G003690 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 4672537 .. 4674629 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATACCTCCTCATTCTTCTTCCTTCCCAAATCTAAATCGCCTTCCTCCGCCGCCCATCGACGTCACCAAAACCAGCAATGGCAATGGCAGCTGCAGCAGCGCTGATGATACCGACCGTGGTCGCAATCATGATTATGCTACTCATTCCAACTGGATCCGGCGGTTCTTTTACATCCTTCAAATCACTCCTCAACAACCACACTCCCGGTAATAAGTTTGAAATAATTTTTTTTTTAAGTAGTTGACATATTAGATATAAATTTAAAATTTATGTCGAGTGGAATTCGAAACTTTTAATTTTCTGTATAGTAAATTTGTGAATTTTACAAAATTTGAAAGTTTTTGGGCTGAATTTGTAATTTAAAAAATACAAGAAGTAAATAAACAAAAACTTCAAAATTCAAAATTCAACCTATTTAAAATTTTTCAAAATTATCTAATTTTTTAGATAAAAAATAGTATTATGTCAAATGTTAAAAGACAACAGAAACTCCATATCTTTACAATGGTATATAATATTATTTATTTTTAGATAGAAAATACTTGAGTGTTGGTTGGGTTGACCTATGTTTGTGTAACCCACCAGTTGCCCAATTAAAATATTTTGATTTTTTAAAAAAATAAATTATTATTGTTGTTTGTTAAAAATAGAGGAGGGTTATATGGAGATAGGTGCACCCTCGCACTTAAGTTTCATCTAATCATTGCTATATATATATATATATATATATATATATATAACTTAGGGTTGTTTTCAAATATAAAAAAATGAGTCAAACTATTTACAAATATAAAAAAATTTCACTATCTATCGGCGATTGACCGCAATAGATTTCTATAGCTAATAGATAGTGAAAATTTTCCATATTTGTAAATAGTTTGATTTTTTTTTATTTGTAATAATTTTCCTATAACTTATAACCTCTCATGGTTTTGCAACTTTTGGTTTATTCTAGAAGGATTTCATAAACTATCCTCACATATACATTATATATATGTAGAGATGTTCATGGGGAGGGGCGGGGCAGGGATGGCTTTCCCGCTCCCTATTCCCGTTCCCCATTTCATTCCTCCTCCCCGCCAAATTTTCCACAGGGATCGGATTTCCCACGGAGAAATTTTTCCCATTTGATTTTTTTTTAAAAAAAAAATCAATTAACATAAATCACAATTATAAAAAAGTTTAAATTAAATGGTTAACTTTTATATGATTATTTTTAAATGGACAATTAGAATTTAAGGGAAAATTACTCAAAATTTTCAAGTTGAAAGAAAAAATTATCTATCAAATTATTCATATATATAATCTAAATTTATTAAAATTCAAACATATTATTTTTTTACACTAATTCAAACATATTTATTATTTTGACCATTAAACAATAAATCTTGAAAATTAAATATAATATTTATATAATAAAAATAAATAACATAGCATTAATTTATTATAATAAATATATGAAAAAATGCTAACAGGGCGGGGATGGGGAACGGAGCCGGGGCATGGAATGCATTTTCCGTCCCCGTCTTCATTTAGCTTTCGTGAATTTTTTTCTCCATTTCCTCTTCCATTTCCCGCCTAAACGGAGAATTCCCATTCCGTTCGGGGCAGGTCCCCACGGATCCCGTTCTCGTAAGAAAAGTGAACATCTCTAATTATATGGTACTTCCTAACCACCGTGAAACTTTATTTTCAGTTCTAACATTTGTATCATTATCAATTTTGTGTTTGAGGAAATTTTCAATTTTCATTTTTTTTTTATTTTTTTGTCTCGAAGGTCCATGAATTTTAAAAACGATAGGTCCAAAATTGCCATTTAACTTGATTTTAACACAAATTCAATATAAAATATTTTTTTTTCTTTATTAGGTTCGGAAAAATACTTGGTTGTAGATGAAGATATTGAATCAAAGTTTGTAATGGAGTCCCACATCAGCAGAATACTGGCAGTTTCTCAAAACTTCGAAACCACCTCCACTAACATCGCTAACCAAACTTCCCCCGGCGAATGCGACCAGCCGCCGCGCTACGACAGTTGCCTCGGCGACAAAAGAAACACTCCGCCGCCACATAATTGTGGCACCTACCAT

mRNA sequence

CAAATACCTCCTCATTCTTCTTCCTTCCCAAATCTAAATCGCCTTCCTCCGCCGCCCATCGACGTCACCAAAACCAGCAATGGCAATGGCAGCTGCAGCAGCGCTGATGATACCGACCGTGGTTCGGAAAAATACTTGGTTGTAGATGAAGATATTGAATCAAAGTTTGTAATGGAGTCCCACATCAGCAGAATACTGGCAGTTTCTCAAAACTTCGAAACCACCTCCACTAACATCGCTAACCAAACTTCCCCCGGCGAATGCGACCAGCCGCCGCGCTACGACAGTTGCCTCGGCGACAAAAGAAACACTCCGCCGCCACATAATTGTGGCACCTACCAT

Coding sequence (CDS)

CAAATACCTCCTCATTCTTCTTCCTTCCCAAATCTAAATCGCCTTCCTCCGCCGCCCATCGACGTCACCAAAACCAGCAATGGCAATGGCAGCTGCAGCAGCGCTGATGATACCGACCGTGGTTCGGAAAAATACTTGGTTGTAGATGAAGATATTGAATCAAAGTTTGTAATGGAGTCCCACATCAGCAGAATACTGGCAGTTTCTCAAAACTTCGAAACCACCTCCACTAACATCGCTAACCAAACTTCCCCCGGCGAATGCGACCAGCCGCCGCGCTACGACAGTTGCCTCGGCGACAAAAGAAACACTCCGCCGCCACATAATTGTGGCACCTACCAT

Protein sequence

QIPPHSSSFPNLNRLPPPPIDVTKTSNGNGSCSSADDTDRGSEKYLVVDEDIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSCLGDKRNTPPPHNCGTYH

Homology

[Close]

BLAST of Lsi05G003690 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 38  TDRGSEKYLVVDEDIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSC 97
           T  G  KY+V +EDI+S FVMESHISR+LA SQ+FET+STN A Q S GECD+PPRYDSC
Sbjct: 39  TSGGLVKYMVEEEDIKSNFVMESHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSC 98

Query: 98  LGDKRNTPPPHNCGTYH 115
           LG KRNTPPP NC T++
Sbjct: 99  LGVKRNTPPPQNCSTFN 115

[Close]

BLAST of Lsi05G003690 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 44  KYLVVDEDIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSCLGDKRN 103
           K ++ +ED+E +F+MESHISRILA S+N++T ST  AN+ S G CD+PPRYDSCLG KRN
Sbjct: 44  KLMMGEEDMELEFLMESHISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRN 103

Query: 104 TPPPHNCGTYH 115
            PPP NC  Y+
Sbjct: 104 NPPPPNCSPYN 114

[Close]

BLAST of Lsi05G003690 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-10
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 41  GSEKYLVVDEDIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSCLGD 100
           GSE  LV DE ++S+F+ME+  SR+L   QN +T  T   N+ S  EC +PPRYDSC G+
Sbjct: 38  GSENCLVGDESLDSEFLMETETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGE 97

Query: 101 KRNTPPPHNC 111
           +R  P P NC
Sbjct: 98  ERQIPNPENC 107

[Close]

BLAST of Lsi05G003690 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.9e-10
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 51  DIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSCLGDKRNTPPPHNC 110
           DI++ F+MESH+SRILA    FET  T  AN  S   C++PPRYDSCLG+ R+ PP  NC
Sbjct: 47  DIDTDFLMESHVSRILA-ELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENC 106

Query: 111 GTYH 115
             Y+
Sbjct: 107 DPYN 109

[Close]

BLAST of Lsi05G003690 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 6.5e-22
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 38  TDRGSEKYLVVDEDIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSC 97
           T  G  KY+V +EDI+S FVMESHISR+LA SQ+FET+STN A Q S GECD+PPRYDSC
Sbjct: 39  TSGGLVKYMVEEEDIKSNFVMESHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSC 98

Query: 98  LGDKRNTPPPHNCGTYH 115
           LG KRNTPPP NC T++
Sbjct: 99  LGVKRNTPPPQNCSTFN 115

[Close]

BLAST of Lsi05G003690 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-20
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 1


Query: 38  TDRGSEKY-LVVDEDIESKFVMESHISRILA-VSQNFETTSTNIANQTSPGECDQPPRYD 97
           T  G  +Y +V +ED +S FVMESHISR+LA  SQ+FET+STN A Q S GECD+PPRYD
Sbjct: 39  TSGGLVRYNMVEEEDTKSNFVMESHISRMLADSSQDFETSSTNNATQVSTGECDRPPRYD 98

Query: 98  SCLGDKRNTPPPHNCGTYH 115
           SCLGDKRNTPPP NC TY+
Sbjct: 99  SCLGDKRNTPPPQNCSTYN 117

[Close]

BLAST of Lsi05G003690 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 6.3e-17
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 44  KYLVVDEDIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSCLGDKRN 103
           K ++ +ED+E +F+MESHISRILA S+N++T ST  AN+ S G CD+PPRYDSCLG KRN
Sbjct: 44  KLMMGEEDMELEFLMESHISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRN 103

Query: 104 TPPPHNCGTYH 115
            PPP NC  Y+
Sbjct: 104 NPPPPNCSPYN 114

[Close]

BLAST of Lsi05G003690 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 41  GSEKYLVVDEDIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSCLGD 100
           GSE  LV DE ++S+F+ME+  SR+L   QN +T  T   N+ S  EC +PPRYDSC G+
Sbjct: 38  GSENCLVGDESLDSEFLMETETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGE 97

Query: 101 KRNTPPPHNC 111
           +R  P P NC
Sbjct: 98  ERQIPNPENC 107

[Close]

BLAST of Lsi05G003690 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 51  DIESKFVMESHISRILAVSQNFETTSTNIANQTSPGECDQPPRYDSCLGDKRNTPPPHNC 110
           DI++ F+MESH+SRILA    FET  T  AN  S   C++PPRYDSCLG+ R+ PP  NC
Sbjct: 47  DIDTDFLMESHVSRILA-ELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENC 106

Query: 111 GTYH 115
             Y+
Sbjct: 107 DPYN 109

The following BLAST results are available for this feature:

BLAST of Lsi05G003690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L711_CUCSA	4.6e-22	70.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	4.4e-17	61.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	6.8e-10	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0L9X5_CUCSA	8.9e-10	54.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1	[more]

BLAST of Lsi05G003690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G003690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680757\|ref\|XP_011651393.1\|	6.5e-22	70.13	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	8.0e-20	68.35	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]
gi\|700202648\|gb\|KGN57781.1\|	6.3e-17	61.97	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	9.8e-10	50.00	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
gi\|700202646\|gb\|KGN57779.1\|	1.3e-09	54.69	hypothetical protein Csa_3G298070 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003690.1	Lsi05G003690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003690	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003690	Melon (DHL92) v3.6.1	lsimedB406
Lsi05G003690	Silver-seed gourd	carlsiB435
Lsi05G003690	Silver-seed gourd	carlsiB700
Lsi05G003690	Cucumber (Chinese Long) v3	cuclsiB225
Lsi05G003690	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G003690	Watermelon (97103) v2	lsiwmbB329
Lsi05G003690	Wax gourd	lsiwgoB447
Lsi05G003690	Cucumber (Gy14) v1	cgylsiB004
Lsi05G003690	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003690	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003690	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003690	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003690	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003690	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003690	Wild cucumber (PI 183967)	cpilsiB203
Lsi05G003690	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003690	Cucumber (Chinese Long) v2	culsiB206
Lsi05G003690	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003690	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003690	Melon (DHL92) v3.5.1	lsimeB385
Lsi05G003690	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003690	Watermelon (97103) v1	lsiwmB361
Lsi05G003690	Cucumber (Gy14) v2	cgyblsiB190
Lsi05G003690	Cucumber (Gy14) v2	cgyblsiB199