Lsi05G003610 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	MADS-box transcription factor family protein
Location	chr05 : 4597288 .. 4598034 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGAAAATTGAGCCTCAATCTGATTCCGAATGAGAAATCTCGAATCTCAACCTTCAAAAAGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTTTCCACGCTTTGCGACGTTCGAACCTGCGTTCTCATCTATGGCCCTGCTCAATATCCTTCCCAATCGGACTTCCAATTTTACACTTGGCCTTCCAATCGAACCGACCTCGAAGCCATGATCCGTGCCTACAAGACCAACTCATCCTCTAATTTTTACAAACACAAGTGTTTCCGTTTGACTGATTTTTTCTCGGATCGGAAGAGGAAAATCGAGTCGGAGATGTGTAAACTTCATGAGAAATTTGAGGAAGTTATGTGCCCTAAGTGGGACGAGCAGCTTGAGCGTTTGTCAGAACACGAATTGAGAGAGTTCATGGAAGGACTCGATGTCAAAATTGAAGCCGCCAATCGAATGATCAATTTCATGGAAGCCGATCACGAAGACCTATTTCGCGAGTTGTTTCCAGAAAATACAGTTCAAATAGGAGGGGATTCCAATACTCCTCCTCCTCCTCCAGTACTGAATCCATCAGATTTGTTCATGATTGGGGCTAACCCTAATGAAGAAGATGTGGCGATGAATGAGTTCAATATTAGGTATGAAGAAGACAACTACATGGCTCATTACGTAAATCTGATGAACGATGAGTTTGATTATTGCAATAATATTGAGCATTTGAAGATGCCCACCGGTAACTTCTAA

mRNA sequence

ATGGGAAGAGGAAAATTGAGCCTCAATCTGATTCCGAATGAGAAATCTCGAATCTCAACCTTCAAAAAGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTTTCCACGCTTTGCGACGTTCGAACCTGCGTTCTCATCTATGGCCCTGCTCAATATCCTTCCCAATCGGACTTCCAATTTTACACTTGGCCTTCCAATCGAACCGACCTCGAAGCCATGATCCGTGCCTACAAGACCAACTCATCCTCTAATTTTTACAAACACAAGTGTTTCCGTTTGACTGATTTTTTCTCGGATCGGAAGAGGAAAATCGAGTCGGAGATGTGTAAACTTCATGAGAAATTTGAGGAAGTTATGTGCCCTAAGTGGGACGAGCAGCTTGAGCGTTTGTCAGAACACGAATTGAGAGAGTTCATGGAAGGACTCGATGTCAAAATTGAAGCCGCCAATCGAATGATCAATTTCATGGAAGCCGATCACGAAGACCTATTTCGCGAGTTGTTTCCAGAAAATACAGTTCAAATAGGAGGGGATTCCAATACTCCTCCTCCTCCTCCAGTACTGAATCCATCAGATTTGTTCATGATTGGGGCTAACCCTAATGAAGAAGATGTGGCGATGAATGAGTTCAATATTAGGTATGAAGAAGACAACTACATGGCTCATTACGTAAATCTGATGAACGATGAGTTTGATTATTGCAATAATATTGAGCATTTGAAGATGCCCACCGGTAACTTCTAA

Coding sequence (CDS)

ATGGGAAGAGGAAAATTGAGCCTCAATCTGATTCCGAATGAGAAATCTCGAATCTCAACCTTCAAAAAGAGGAAGAACAGTTTGATGAAGAAGGCTTACGAGCTTTCCACGCTTTGCGACGTTCGAACCTGCGTTCTCATCTATGGCCCTGCTCAATATCCTTCCCAATCGGACTTCCAATTTTACACTTGGCCTTCCAATCGAACCGACCTCGAAGCCATGATCCGTGCCTACAAGACCAACTCATCCTCTAATTTTTACAAACACAAGTGTTTCCGTTTGACTGATTTTTTCTCGGATCGGAAGAGGAAAATCGAGTCGGAGATGTGTAAACTTCATGAGAAATTTGAGGAAGTTATGTGCCCTAAGTGGGACGAGCAGCTTGAGCGTTTGTCAGAACACGAATTGAGAGAGTTCATGGAAGGACTCGATGTCAAAATTGAAGCCGCCAATCGAATGATCAATTTCATGGAAGCCGATCACGAAGACCTATTTCGCGAGTTGTTTCCAGAAAATACAGTTCAAATAGGAGGGGATTCCAATACTCCTCCTCCTCCTCCAGTACTGAATCCATCAGATTTGTTCATGATTGGGGCTAACCCTAATGAAGAAGATGTGGCGATGAATGAGTTCAATATTAGGTATGAAGAAGACAACTACATGGCTCATTACGTAAATCTGATGAACGATGAGTTTGATTATTGCAATAATATTGAGCATTTGAAGATGCCCACCGGTAACTTCTAA

Protein sequence

MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQFYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVMCPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEADHEDLFRELFPENTVQIGGDSNTPPPPPVLNPSDLFMIGANPNEEDVAMNEFNIRYEEDNYMAHYVNLMNDEFDYCNNIEHLKMPTGNF

Homology

[Close]

BLAST of Lsi05G003610 vs. Swiss-Prot
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-14
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 1


Query: 6   LSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQFYTWP 65
           + L  I N+K+RI+T+KKRK SL KKA E STLC V TC+++YGP +       +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  SNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSD---RKRKIESEMCKLHEKFEEVMCP 125
            + T + A+IR YK   S++  K     +  F +D       +  +  K   K+      
Sbjct: 66  KDETKVRAIIRKYKDTVSTSCRKET--NVETFVNDVGKGNEVVTKKRVKRENKYS----- 125

Query: 126 KWDEQLERLSEHELREFMEGLDVKI-EAANRMINFMEADHEDLFRELFPEN 173
            W+E+L++ S  +L      +D K+ EA  R    M   +       FP+N
Sbjct: 126 SWEEKLDKCSREQLHGIFCAVDSKLNEAVTRQERSMFRVNHQAMDTPFPQN 169

[Close]

BLAST of Lsi05G003610 vs. Swiss-Prot
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08
Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = 1


Query: 5   KLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQFYTW 64
           K+ L+LI NE+SR ++F KRKN + KK +ELSTLC V+ C LIY P     +S      W
Sbjct: 3   KVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPES------W 62

Query: 65  PSNR------TDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEE 124
           PS        +    M R  +T    +   H   R+T    ++ + + +E  +L  +   
Sbjct: 63  PSREGAKKVASKFLEMPRTARTRKMMDQETHLMERITK-AKEQLKNLAAENRELQVRRFM 122

Query: 125 VMCPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEADHEDLFRELFPENTVQIGG 180
             C +      R    +L++ +  +++ ++  N  I  ++ + E L   + P  T +IG 
Sbjct: 123 FDCVEGKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKENGESLLSSVSPFPT-RIGV 175

[Close]

BLAST of Lsi05G003610 vs. Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-08
Identity = 47/184 (25.54%), Postives = 86/184 (46.74%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRGK+ +  I N  +R  T+ KR+N ++KKA E++ LCD +  ++I+G       +  +
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFG-------NSGK 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKL-HEKFEEV 120
            + + S  T L  M+  Y+  S    +  K   L++     K++ ++   KL H K E++
Sbjct: 61  MHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDI 120

Query: 121 MCPKWDEQLERLSEHELREFMEGLDVKIEAANRMI----NFMEADHEDLFRELFPENTVQ 180
                 E +  + E  L   +  +  K     RM+      +E +H+ L   L  +    
Sbjct: 121 NSLNHKELM--VLEEGLTNGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEMAA 175

[Close]

BLAST of Lsi05G003610 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-08
Identity = 46/167 (27.54%), Postives = 79/167 (47.31%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGR K+ + ++ +  +R  TF KR+  L KKA EL+TLC+    ++++ P   P      
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFS---- 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSS-----SNFYKHKCFRLTDFFSDRKRKIESEM---CKL 120
            Y  P+  +  E  +R Y  + S     S  Y+ K  RL++      +++E+E     K 
Sbjct: 61  -YGKPNLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKS 120

Query: 121 HEKFEEVMCPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEA 160
            EK E     ++ E +E L+  EL E+ + L          +N ++A
Sbjct: 121 QEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of Lsi05G003610 vs. Swiss-Prot
Match: AGL92_ARATH (Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 1


Query: 3   RGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQFY 62
           R K  L LIP+   R +TF+KR   + KK +EL+TLCD++ C +IY P + P+       
Sbjct: 2   RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFENPT------- 61

Query: 63  TWPSNRTDLEAM---IRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIES 108
            WPS     E +   +    T  S     H+ F L D  +  + K+ES
Sbjct: 62  VWPSTEGVQEVISEFMEKPATERSKTMMSHETF-LRDQITKEQNKLES 101

[Close]

BLAST of Lsi05G003610 vs. TrEMBL
Match: A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 84/156 (53.85%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRGKLS+ LI NEKSR +TF KRK SL++KAYELSTLCDVR CV+++GP Q   QS  Q
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYK--HKCFRLTDFFSDRKRKIESEMCKLHEKFEE 120
            +TWP +  ++  MI +YKTN     YK   K F L DFFS+RK+K+E++M KL +   E
Sbjct: 61  LHTWPPSADEVNNMIASYKTNC---LYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSE 120

Query: 121 VMCPKWDEQLERLSEHELREFMEGLDVKIEAANRMI 155
              P WDE+L+ L E +LR  M  LD KIE A + I
Sbjct: 121 ERFPSWDERLDHLLEDQLRVLMVELDSKIEIAKKRI 153

[Close]

BLAST of Lsi05G003610 vs. TrEMBL
Match: A0A0A0LAL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 91/213 (42.72%), Postives = 115/213 (53.99%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRG LSL LIPN KSR +TF KRK SL+KKAYELSTLCDV+TC+ I      PS     
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCD-PST---H 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
           F TWP N   +  MIR+YK++S +    +  + L  FFSDRK KI +   KL        
Sbjct: 61  FETWPPNHHQIHQMIRSYKSHSFTK--PNSSYDLNRFFSDRKNKILTNTSKLLHNV---- 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEADHEDLFRELFPENTVQIGGDS 180
                  ++  SEH+L E ++ LD KI  AN MI FMEAD++ L  +        IG D 
Sbjct: 121 -------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQ-------AIGMD- 180

Query: 181 NTPPPPPVLNPSDLFMIGANPNEEDVAMNEFNI 214
            TPP       +  F +    NE D    E+N+
Sbjct: 181 -TPPSQTEDEETTQFNVSDLFNEPD-EFEEYNV 186

[Close]

BLAST of Lsi05G003610 vs. TrEMBL
Match: M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 63/154 (40.91%), Postives = 95/154 (61.69%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRG+L + LI NE+SR +TF+KR   +MKKAYE STLC+V  C++IYGP       + Q
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
             TWP N   ++ +I  YK ++ S   K K F L+D   DRK K+ +++ +  ++  E  
Sbjct: 61  --TWPQNSEQVDRIINKYKASTMSKPAK-KTFDLSDLLMDRKNKVYADIYRARKEMYEAK 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANRMI 155
            P WDE++E  SE++L   ++ LD K+E+  R +
Sbjct: 121 YPTWDERIESFSENQLEALLDKLDAKLESGKRTL 151

[Close]

BLAST of Lsi05G003610 vs. TrEMBL
Match: M5XI05_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 74/238 (31.09%), Postives = 125/238 (52.52%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRG+L + LI NE++R +TF+KR+  +MKKAYE STLC++  C++IYGP Q  +    +
Sbjct: 1   MGRGRLKMELIANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQ--TDRPPE 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
            +TWP NR +++ +I  YK +      K K F L+D   DRK K+  ++ +  ++  E  
Sbjct: 61  LHTWPENRDEVDRIINKYKASIMRKPAK-KTFDLSDLLRDRKTKVHVDIYRARKEMYEAK 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANR-MINFMEADHEDLFRELFPENTVQIGGD 180
            P WDE++E  SE++L   +  LD K+E+  R ++N  +   E        ++ +   G 
Sbjct: 121 YPTWDERIESFSENQLEALLNTLDTKLESGKRTLLNKRKQSAE------CHQHQIHCMGK 180

Query: 181 SNTPPPPPVLNPSDLFMIGANPNEEDVAMNEFN---IRYEEDNYMAHYVNLMNDEFDY 235
           +          P+ + ++G NPN   +  +        Y    ++ +Y  LM+    Y
Sbjct: 181 A---------APNKIMLMGGNPNNNIIGESPSQKQPCNYFMQGHVQYYARLMHPTVPY 220

[Close]

BLAST of Lsi05G003610 vs. TrEMBL
Match: A0A022Q4W9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024849mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 66/165 (40.00%), Postives = 97/165 (58.79%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRGKL + LI NEK R + F+KRK  ++K A ELSTLC V   ++I  P Q  ++    
Sbjct: 1   MGRGKLRMELIKNEKVRNAAFEKRKKGIVKAANELSTLCGVHIGMIINEPGQNSNEPTI- 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
              WP+NR  +  +I +YK+  + N  ++  + L  FF ++  KIE E+ KL ++  EV 
Sbjct: 61  ---WPANREVISKLIDSYKSKPAGNDCRYGTYNLPAFFKNQTEKIEDEVNKLRKRTREVK 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEADHEDLF 166
            PKWDE+L+  SE EL++F   L  KIE+A   IN ++     +F
Sbjct: 121 YPKWDERLDTCSEDELKDFAGKLTAKIESARVRINSIKVSRSTVF 161

[Close]

BLAST of Lsi05G003610 vs. TAIR10
Match: AT5G58890.1 (AT5G58890.1 AGAMOUS-like 82)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-15
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 1


Query: 6   LSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQFYTWP 65
           + L  I N+K+RI+T+KKRK SL KKA E STLC V TC+++YGP +       +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  SNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSD---RKRKIESEMCKLHEKFEEVMCP 125
            + T + A+IR YK   S++  K     +  F +D       +  +  K   K+      
Sbjct: 66  KDETKVRAIIRKYKDTVSTSCRKET--NVETFVNDVGKGNEVVTKKRVKRENKYS----- 125

Query: 126 KWDEQLERLSEHELREFMEGLDVKI-EAANRMINFMEADHEDLFRELFPEN 173
            W+E+L++ S  +L      +D K+ EA  R    M   +       FP+N
Sbjct: 126 SWEEKLDKCSREQLHGIFCAVDSKLNEAVTRQERSMFRVNHQAMDTPFPQN 169

[Close]

BLAST of Lsi05G003610 vs. TAIR10
Match: AT5G55690.1 (AT5G55690.1 MADS-box transcription factor family protein)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-15
Identity = 52/157 (33.12%), Postives = 85/157 (54.14%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGR  + +  I NEK+RI+T+KKRK  L KKA E STLC V TCV++YGP++   +   +
Sbjct: 1   MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
              WP + + +  ++  Y+  +SS+    K + + +       K+E     +  K+    
Sbjct: 61  PELWPKDGSKVREILTKYRDTASSSC--TKTYTVQECLEKNNTKVEKP--TIATKY---- 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKI-EAANRMINF 157
            P WD++L++ S ++L      ++ KI EA NR   F
Sbjct: 121 -PTWDKKLDQCSLNDLYAVFMAVENKIQEATNRNQTF 148

[Close]

BLAST of Lsi05G003610 vs. TAIR10
Match: AT5G26580.1 (AT5G26580.1 AGAMOUS-like-34)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 1  MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGP 51
          MG  K+ L+LI NE SR ++F KRKN +MKK YELSTLC V+ C LIY P
Sbjct: 1  MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSP 50

[Close]

BLAST of Lsi05G003610 vs. TAIR10
Match: AT5G27960.1 (AT5G27960.1 AGAMOUS-like 90)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = 1


Query: 5   KLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQFYTW 64
           K+ L+LI NE+SR ++F KRKN + KK +ELSTLC V+ C LIY P     +S      W
Sbjct: 3   KVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPES------W 62

Query: 65  PSNR------TDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEE 124
           PS        +    M R  +T    +   H   R+T    ++ + + +E  +L  +   
Sbjct: 63  PSREGAKKVASKFLEMPRTARTRKMMDQETHLMERITK-AKEQLKNLAAENRELQVRRFM 122

Query: 125 VMCPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEADHEDLFRELFPENTVQIGG 180
             C +      R    +L++ +  +++ ++  N  I  ++ + E L   + P  T +IG 
Sbjct: 123 FDCVEGKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKENGESLLSSVSPFPT-RIGV 175

[Close]

BLAST of Lsi05G003610 vs. TAIR10
Match: AT2G34440.1 (AT2G34440.1 AGAMOUS-like 29)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-09
Identity = 46/167 (27.54%), Postives = 79/167 (47.31%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGR K+ + ++ +  +R  TF KR+  L KKA EL+TLC+    ++++ P   P      
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFS---- 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSS-----SNFYKHKCFRLTDFFSDRKRKIESEM---CKL 120
            Y  P+  +  E  +R Y  + S     S  Y+ K  RL++      +++E+E     K 
Sbjct: 61  -YGKPNLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKS 120

Query: 121 HEKFEEVMCPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEA 160
            EK E     ++ E +E L+  EL E+ + L          +N ++A
Sbjct: 121 QEKLESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of Lsi05G003610 vs. NCBI nr
Match: gi|778674258|ref|XP_011650173.1| (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 84/156 (53.85%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRGKLS+ LI NEKSR +TF KRK SL++KAYELSTLCDVR CV+++GP Q   QS  Q
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYK--HKCFRLTDFFSDRKRKIESEMCKLHEKFEE 120
            +TWP +  ++  MI +YKTN     YK   K F L DFFS+RK+K+E++M KL +   E
Sbjct: 61  LHTWPPSADEVNNMIASYKTNC---LYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSE 120

Query: 121 VMCPKWDEQLERLSEHELREFMEGLDVKIEAANRMI 155
              P WDE+L+ L E +LR  M  LD KIE A + I
Sbjct: 121 ERFPSWDERLDHLLEDQLRVLMVELDSKIEIAKKRI 153

[Close]

BLAST of Lsi05G003610 vs. NCBI nr
Match: gi|659121915|ref|XP_008460878.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 9.5e-34
Identity = 82/154 (53.25%), Postives = 103/154 (66.88%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRGKLS+ LI NEKSR +TF KRK SL++KAYELSTLCDVR CV ++GP Q   QS  Q
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
            +TWP    ++ +MI +YKTN        K F L DFFS+RK+K+E++M KL +   E  
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHK-RARKAFGLIDFFSERKKKVETDMSKLRKDVAEAR 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANRMI 155
             KWDE+L+ L E +LR  M  LD KIE A + I
Sbjct: 121 FTKWDERLDHLLEDQLRVLMMELDSKIEIAKKRI 153

[Close]

BLAST of Lsi05G003610 vs. NCBI nr
Match: gi|449455824|ref|XP_004145650.1| (PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 4.3e-26
Identity = 91/213 (42.72%), Postives = 115/213 (53.99%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRG LSL LIPN KSR +TF KRK SL+KKAYELSTLCDV+TC+ I      PS     
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCD-PST---H 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
           F TWP N   +  MIR+YK++S +    +  + L  FFSDRK KI +   KL        
Sbjct: 61  FETWPPNHHQIHQMIRSYKSHSFTK--PNSSYDLNRFFSDRKNKILTNTSKLLHNV---- 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANRMINFMEADHEDLFRELFPENTVQIGGDS 180
                  ++  SEH+L E ++ LD KI  AN MI FMEAD++ L  +        IG D 
Sbjct: 121 -------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQ-------AIGMD- 180

Query: 181 NTPPPPPVLNPSDLFMIGANPNEEDVAMNEFNI 214
            TPP       +  F +    NE D    E+N+
Sbjct: 181 -TPPSQTEDEETTQFNVSDLFNEPD-EFEEYNV 186

[Close]

BLAST of Lsi05G003610 vs. NCBI nr
Match: gi|596029901|ref|XP_007219420.1| (hypothetical protein PRUPE_ppa021970mg [Prunus persica])

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 63/154 (40.91%), Postives = 95/154 (61.69%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRG+L + LI NE+SR +TF+KR   +MKKAYE STLC+V  C++IYGP       + Q
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
             TWP N   ++ +I  YK ++ S   K K F L+D   DRK K+ +++ +  ++  E  
Sbjct: 61  --TWPQNSEQVDRIINKYKASTMSKPAK-KTFDLSDLLMDRKNKVYADIYRARKEMYEAK 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANRMI 155
            P WDE++E  SE++L   ++ LD K+E+  R +
Sbjct: 121 YPTWDERIESFSENQLEALLDKLDAKLESGKRTL 151

[Close]

BLAST of Lsi05G003610 vs. NCBI nr
Match: gi|645246354|ref|XP_008229316.1| (PREDICTED: MADS-box transcription factor 1-like [Prunus mume])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 76/215 (35.35%), Postives = 119/215 (55.35%), Query Frame = 1


Query: 1   MGRGKLSLNLIPNEKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIYGPAQYPSQSDFQ 60
           MGRG+L + LI NE++R +TF+KR+  +MKKAYE STLC++  C++IYGP Q  +    +
Sbjct: 1   MGRGRLKMELIANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQ--TDRPPE 60

Query: 61  FYTWPSNRTDLEAMIRAYKTNSSSNFYKHKCFRLTDFFSDRKRKIESEMCKLHEKFEEVM 120
            YTWP NR +++ +I  YK +      K K F L+D   DRK K+  ++ +  ++  E  
Sbjct: 61  LYTWPENRDEVDRIINKYKASIMRKPAK-KTFDLSDLLRDRKTKVHVDIYRAQKEMYEAK 120

Query: 121 CPKWDEQLERLSEHELREFMEGLDVKIEAANR-MINFMEADHE------DLFRELFPENT 180
            P WDE++E  SE++L   +  LD K+E+  R ++N  +   E          +  P   
Sbjct: 121 YPTWDERIESFSENQLEALLNTLDTKLESGKRTLLNKRKQSAECHQHQIHCMGKAAPTKI 180

Query: 181 VQIGGDSN---TPPPPPVLNPSDLFMIGANPNEED 206
           + +GG+ N   T        P + FM G + +EED
Sbjct: 181 MLMGGNPNNNITGESSSQKQPCNYFMQG-HVHEED 211

The following BLAST results are available for this feature:

BLAST of Lsi05G003610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL82_ARATH	3.8e-14	32.16	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1	[more]
AGL90_ARATH	2.4e-08	28.18	Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2	[more]
MADS2_PETHY	6.9e-08	25.54	Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1	[more]
AGL29_ARATH	6.9e-08	27.54	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1	[more]
AGL92_ARATH	1.5e-07	34.26	Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1	[more]

BLAST of Lsi05G003610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LME6_CUCSA	1.0e-34	53.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1	[more]
A0A0A0LAL9_CUCSA	3.0e-26	42.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1	[more]
M5X3X5_PRUPE	2.5e-25	40.91	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1	[more]
M5XI05_PRUPE	2.1e-24	31.09	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 S...	[more]
A0A022Q4W9_ERYGU	2.4e-23	40.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024849mg PE=4 SV=1	[more]

BLAST of Lsi05G003610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58890.1	2.1e-15	32.16	AGAMOUS-like 82	[more]
AT5G55690.1	2.1e-15	33.12	MADS-box transcription factor family protein	[more]
AT5G26580.1	2.0e-10	62.00	AGAMOUS-like-34	[more]
AT5G27960.1	1.3e-09	28.18	AGAMOUS-like 90	[more]
AT2G34440.1	3.9e-09	27.54	AGAMOUS-like 29	[more]

BLAST of Lsi05G003610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674258\|ref\|XP_011650173.1\|	1.5e-34	53.85	PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus]	[more]
gi\|659121915\|ref\|XP_008460878.1\|	9.5e-34	53.25	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|449455824\|ref\|XP_004145650.1\|	4.3e-26	42.72	PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus]	[more]
gi\|596029901\|ref\|XP_007219420.1\|	3.6e-25	40.91	hypothetical protein PRUPE_ppa021970mg [Prunus persica]	[more]
gi\|645246354\|ref\|XP_008229316.1\|	1.1e-24	35.35	PREDICTED: MADS-box transcription factor 1-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003610.1	Lsi05G003610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 1.3E-10coord: 23..38 score: 1.3E-10coord: 38..59 score: 1.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..52 score: 1.9
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 3.1
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..49 score: 18
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..91 score: 3.01
None	No IPR available	unknown	Coil	Coil	coord: 140..167 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..221 score: 6.4
None	No IPR available	PANTHER	PTHR11945:SF176	PROTEIN AGAMOUS-LIKE 82	coord: 2..221 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003610	Silver-seed gourd	carlsiB435
Lsi05G003610	Silver-seed gourd	carlsiB700
Lsi05G003610	Cucumber (Chinese Long) v3	cuclsiB225
Lsi05G003610	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G003610	Watermelon (97103) v2	lsiwmbB329
Lsi05G003610	Wax gourd	lsiwgoB447
Lsi05G003610	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003610	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003610	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003610	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003610	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003610	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003610	Wild cucumber (PI 183967)	cpilsiB203
Lsi05G003610	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003610	Cucumber (Chinese Long) v2	culsiB206
Lsi05G003610	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003610	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003610	Melon (DHL92) v3.5.1	lsimeB385
Lsi05G003610	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003610	Watermelon (97103) v1	lsiwmB361
Lsi05G003610	Cucumber (Gy14) v2	cgyblsiB190
Lsi05G003610	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003610	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003610	Melon (DHL92) v3.6.1	lsimedB406