Lsi05G003290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Calcium-dependent lipid-binding domain-containing protein
Location	chr05 : 4192568 .. 4194395 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATTTGAAAATTGAAGGTATATAAATTAGGTAGAATAGCAAAGCAAAAGGCTTCATCATCAAAAATTCACATTGGAATTATCAATTGCCAGTGAGGGTGAAGGTAGTATAAAACAAATTGCTCTGTTTTCTGCATATCCAAAGAAGGCAAGGGAATCCATAACCCACAGAAACAAAAAGAGTTGAAAACAAAAACAGAGTTTCTTCTTCTTGAAGAATCTCTGATTTAGGGTTTGAAAATGGAGAATTTAATGGGTCTGCTAAGAATCCATGTGTTTAGAGGAGTCAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGGTTTCTTTCTTCTTCTTCTTCTTCTTCATTACTCTGTTTTTTTTTTTTTCAATCTGGTTTTCTTGAAGCTTTTGACTGAAAAATTATCATCTCATGATTTTGATTTTTGGCTTTTGGTTTTTTTTTTTGGCTTTGTTTGGATATTTGTATGATTTTTTTTTTGGGTTTTGTTTGTGTTTGATCATGTTGACGATCTTCTGTCGAAAAGATGAAGAAGACGTTACCATCTTTATAAGATGTAAGATCAAAATTTGTTTGATTATTTGTTGTTCTAACAATTTTTAGTCTCTAAGATCAAGAGCCTATGAGCTTAAGCTTTTAAATTTAGTGATTAAGTAGTCGTTTAGACCTTTATGTTGGATTTTGTGCTAATTTTTTTAGCTCACCACTGAAAGAAAAAGTTAAAACCATAACTATTTTGTTTTTTATTTTTTATTTTTTTTGAAAATTGTAATGTTTGGATCTTTTTTAAAGATTTTTTTTTTTAAAATTTGAATTTGAATTTTGAAAACGATAGTAAATTAAAGAAACCCATATGTTCAAGTACTTTTTCAATAGGGTCAAAGTATTTTAAGAAGATTAAATTTATTAAAATTTATCGAACTTTTTGAGTATCAAATATGTAGAGTCATTTCTTCTCGAAATTCATTCTGACGGTCAATTTAAAACGTCTTGCATGTGAAGCATAATTTAGATTAAATTTACTCTAACTCGTCAACTTTAGCTCTCTCACGGGGTATTATATTACATGATTAATAGAAATTGAAGACTCGAGTAGTGAAGCAAAACATCAACCCAGAGTGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATATCCCAGTCAATGTGGTAAATAAATAATTATATCACATCATCCATTCATATCCCACTTTTTTTTTTCTTTATTTTCATATGTAATGAAAAATATGTTTGATAACGTTATTGTTTCATACACAGCTCGTATACGACAGAGACTTGTTTTCGCTCGACGACAAGATGGGGGATGCGGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTTCCAAGTGGAACCATTATAACAAAGGTTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGCTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAGATATAAAAATTTTAACTATATGATAAAATATCTTATGTAATGGGATTTCCTTTTGGACTTTTATTTTGGTGTCTTTAATTTTGTCTTAATTATGAAACTAGTTGTGTTGTGGCCTACCAATTATATCCTTGGAATGAGTGGATATGTAGTGTCTTGCACATTAGTCTTTAAGAAATCAACCTACTTGATTTTTTATAATCAACAAAGATGACTAAAAAAAAA

mRNA sequence

ATATATTTGAAAATTGAAGGTATATAAATTAGGTAGAATAGCAAAGCAAAAGGCTTCATCATCAAAAATTCACATTGGAATTATCAATTGCCAGTGAGGGTGAAGGTAGTATAAAACAAATTGCTCTGTTTTCTGCATATCCAAAGAAGGCAAGGGAATCCATAACCCACAGAAACAAAAAGAGTTGAAAACAAAAACAGAGTTTCTTCTTCTTGAAGAATCTCTGATTTAGGGTTTGAAAATGGAGAATTTAATGGGTCTGCTAAGAATCCATGTGTTTAGAGGAGTCAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTGAAGACTCGAGTAGTGAAGCAAAACATCAACCCAGAGTGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATATCCCAGTCAATGTGCTCGTATACGACAGAGACTTGTTTTCGCTCGACGACAAGATGGGGGATGCGGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTTCCAAGTGGAACCATTATAACAAAGGTTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGCTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAGATATAAAAATTTTAACTATATGATAAAATATCTTATGTAATGGGATTTCCTTTTGGACTTTTATTTTGGTGTCTTTAATTTTGTCTTAATTATGAAACTAGTTGTGTTGTGGCCTACCAATTATATCCTTGGAATGAGTGGATATGTAGTGTCTTGCACATTAGTCTTTAAGAAATCAACCTACTTGATTTTTTATAATCAACAAAGATGACTAAAAAAAAA

Coding sequence (CDS)

ATGGAGAATTTAATGGGTCTGCTAAGAATCCATGTGTTTAGAGGAGTCAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTGAAGACTCGAGTAGTGAAGCAAAACATCAACCCAGAGTGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATATCCCAGTCAATGTGCTCGTATACGACAGAGACTTGTTTTCGCTCGACGACAAGATGGGGGATGCGGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTTCCAAGTGGAACCATTATAACAAAGGTTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGCTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG

Protein sequence

MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL

Homology

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BLAST of Lsi05G003290 vs. Swiss-Prot
Match: CAR4_ARATH (Protein C2-DOMAIN ABA-RELATED 4 OS=Arabidopsis thaliana GN=CAR4 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.2e-63
Identity = 108/165 (65.45%), Postives = 144/165 (87.27%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           M++L+GLLRI + RGVNLAVRD+ SSDPYV+ KMGKQKLKTRV+ +++NPEWNEDLTLS+
Sbjct: 13  MDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSV 72

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            D N+ V + VYD D+FS DDKMGDAEF+++P++EA++M+L+ LPSGTI+T V+PSR NC
Sbjct: 73  TDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQLDGLPSGTIVTTVKPSRRNC 132

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EES + WV+G+++Q + LRLR+VE GE+E QLQWID+PGS+GL
Sbjct: 133 LAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLPGSKGL 177

[Close]

BLAST of Lsi05G003290 vs. Swiss-Prot
Match: CAR3_ARATH (Protein C2-DOMAIN ABA-RELATED 3 OS=Arabidopsis thaliana GN=CAR3 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.5e-62
Identity = 104/165 (63.03%), Postives = 141/165 (85.45%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           M+NL+G+LR+ V RGVNLAVRDV SSDPYV+ K+G+QKLKT+VVKQN+NP+W EDL+ ++
Sbjct: 4   MDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTV 63

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DPN+P+ ++VYD D FS DDKMGDAE D++P++EA++M L+ LP GTII+ + PSR NC
Sbjct: 64  TDPNLPLTLIVYDHDFFSKDDKMGDAEIDLKPYIEALRMELSGLPDGTIISTIGPSRGNC 123

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EES I W+N +++Q + LRLRNVE GE+E++LQWID+PGS+GL
Sbjct: 124 LAEESYIRWINDRIVQHICLRLRNVERGEVEIELQWIDLPGSKGL 168

[Close]

BLAST of Lsi05G003290 vs. Swiss-Prot
Match: CAR2_ARATH (Protein C2-DOMAIN ABA-RELATED 2 OS=Arabidopsis thaliana GN=CAR2 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.6e-61
Identity = 108/164 (65.85%), Postives = 138/164 (84.15%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MEN++GLLR+HV RGVNLA+RD  SSDPYVI +MGKQKL+TRV+K+N+N EWNEDLTLS+
Sbjct: 1   MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKM--RLNNLPSGTIITKVQPSRE 120
            DP +PV ++VYDRD FS DDKMGDA F + PF+EA+++  +L  LP GT+I K+Q SR+
Sbjct: 61  TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFLEAIRIQNQLGGLPEGTVIMKIQASRQ 120

Query: 121 NCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGS 163
           NCLSEES IVW  G+++Q MFL+L+NVE GEIELQL+WID+ G+
Sbjct: 121 NCLSEESKIVWHKGKIVQNMFLKLQNVERGEIELQLEWIDVSGA 164

[Close]

BLAST of Lsi05G003290 vs. Swiss-Prot
Match: CAR1_ARATH (Protein C2-DOMAIN ABA-RELATED 1 OS=Arabidopsis thaliana GN=CAR1 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.1e-61
Identity = 109/168 (64.88%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENL+GLLRIHV RGVNLA+RD+ SSDPY++   GKQKLKTRVVK ++NPEWN+DLTLS+
Sbjct: 1   MENLVGLLRIHVKRGVNLAIRDISSSDPYIVVHCGKQKLKTRVVKHSVNPEWNDDLTLSV 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLN---NLPSGTIITKVQPSR 120
            DPN+P+ + VYD DL S DDKMG+AEF + PF+EA+K        LP+GTII K++PSR
Sbjct: 61  TDPNLPIKLTVYDYDLLSADDKMGEAEFHIGPFIEAIKFAHQLGPGLPNGTIIKKIEPSR 120

Query: 121 ENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           +NCLSE S IV   G+++Q MFLRL++VE GE+ELQL+WID+PGSRG+
Sbjct: 121 KNCLSESSHIVLNQGKIVQNMFLRLQHVECGEVELQLEWIDVPGSRGI 168

[Close]

BLAST of Lsi05G003290 vs. Swiss-Prot
Match: CAR5_ARATH (Protein C2-DOMAIN ABA-RELATED 5 OS=Arabidopsis thaliana GN=CAR5 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.1e-61
Identity = 106/161 (65.84%), Postives = 138/161 (85.71%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           M++L+GLLRI + RGVNLAVRD+ SSDPYV+ KM KQKLKTRV+ +N+NPEWNEDLTLS+
Sbjct: 37  MDSLLGLLRIRIKRGVNLAVRDLNSSDPYVVVKMAKQKLKTRVIYKNVNPEWNEDLTLSV 96

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DPN+ V + VYD D F+ DDKMGDAEF ++PF+ A+KM L++LPSGTI+T VQPSR+NC
Sbjct: 97  SDPNLTVLLTVYDYDTFTKDDKMGDAEFGIKPFVNALKMHLHDLPSGTIVTTVQPSRDNC 156

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPG 162
           L+EES ++W +G+++Q + LRLR+VE GE+E QLQWID+PG
Sbjct: 157 LAEESRVIWSDGKLVQDIVLRLRHVECGEVEAQLQWIDLPG 197

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BLAST of Lsi05G003290 vs. TrEMBL
Match: A0A0A0L753_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316280 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-85
Identity = 157/165 (95.15%), Postives = 163/165 (98.79%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENLMGLLRIHVFRGVNLAVRDV SSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI
Sbjct: 1   MENLMGLLRIHVFRGVNLAVRDVSSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
           QDP++PVNVLVYD+DLFSLDDKMGDAEFDVRPF+EAVKMRLNNLPSGTII K+QPSRENC
Sbjct: 61  QDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           LSEESCI+WVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL
Sbjct: 121 LSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165

[Close]

BLAST of Lsi05G003290 vs. TrEMBL
Match: U5GFU5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14500g PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.2e-73
Identity = 129/165 (78.18%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENL+GLLRIHV RG++LA+RD+ SSDPYV+ KMGKQKLKTRV+KQNINPEWN+DLTLS+
Sbjct: 1   MENLLGLLRIHVTRGIDLAIRDIRSSDPYVVVKMGKQKLKTRVIKQNINPEWNDDLTLSV 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DPN+PV + VYD+D FSLDDKMGDAEFD+R F+E VKM+L+NLP+GTII+K+QPSRENC
Sbjct: 61  VDPNLPVLIKVYDKDTFSLDDKMGDAEFDIRQFIEVVKMQLDNLPTGTIISKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EESCIVW NG+VIQ MFLRLR+VESGE+ELQL+WIDIPGSRG+
Sbjct: 121 LAEESCIVWANGKVIQNMFLRLRHVESGEVELQLEWIDIPGSRGM 165

[Close]

BLAST of Lsi05G003290 vs. TrEMBL
Match: A9P958_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08840g PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-72
Identity = 130/165 (78.79%), Postives = 150/165 (90.91%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENLMGLLRIHV RGVNLAVRDV SSDPYV+ KMGKQKLKTRV+KQNINPEWN+DLTLSI
Sbjct: 1   MENLMGLLRIHVIRGVNLAVRDVCSSDPYVVVKMGKQKLKTRVIKQNINPEWNDDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DP +PV + VYD+D FSLDDKMGDAEFD+  F+E VKMRL+NLPSGTII K+QPSRENC
Sbjct: 61  VDPKLPVLIRVYDKDTFSLDDKMGDAEFDISQFIEVVKMRLDNLPSGTIIRKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EESCIVW  G+++Q +FLRL++VE+GE+ELQL+WIDIPGSRGL
Sbjct: 121 LAEESCIVWATGKLVQNLFLRLKHVETGEVELQLEWIDIPGSRGL 165

[Close]

BLAST of Lsi05G003290 vs. TrEMBL
Match: A0A067KDT0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13428 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.4e-72
Identity = 126/165 (76.36%), Postives = 153/165 (92.73%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MEN++GLLRIHV RG+NLAVRDV+SSDPYV+ KMGKQKLKTRVVKQN+NPEWNEDLTLSI
Sbjct: 1   MENILGLLRIHVHRGINLAVRDVMSSDPYVVVKMGKQKLKTRVVKQNVNPEWNEDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
           ++PN+P+ ++VYD+D FS DDKMGDAEFD+RPF+EAVKMRL +LPSGTIIT++QP+R+NC
Sbjct: 61  ENPNLPIKIVVYDKDTFSRDDKMGDAEFDIRPFLEAVKMRLEDLPSGTIITRIQPNRQNC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L++ES I+WV G+VIQ + LRLRNVE GE+ELQLQWID+PG RGL
Sbjct: 121 LADESQIIWVEGKVIQNIILRLRNVECGEVELQLQWIDVPGIRGL 165

[Close]

BLAST of Lsi05G003290 vs. TrEMBL
Match: V4SXS8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012950mg PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.3e-72
Identity = 127/165 (76.97%), Postives = 150/165 (90.91%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENLMGLLR+HV RGVNLAVRDVVSSDPYV+ KMGKQKLKTRVVK N+NPEWNEDLTLSI
Sbjct: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DPN+P+ + VYD+D FSLDDKMGDAEF + PF+EA+KMRL  LP+GTI+TK+QPSRENC
Sbjct: 61  SDPNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EES IVW +G+++Q +FLRLRNVE GE+++QL+WIDIPGSRGL
Sbjct: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165

[Close]

BLAST of Lsi05G003290 vs. TAIR10
Match: AT3G17980.1 (AT3G17980.1 Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.3e-64
Identity = 108/165 (65.45%), Postives = 144/165 (87.27%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           M++L+GLLRI + RGVNLAVRD+ SSDPYV+ KMGKQKLKTRV+ +++NPEWNEDLTLS+
Sbjct: 13  MDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSV 72

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            D N+ V + VYD D+FS DDKMGDAEF+++P++EA++M+L+ LPSGTI+T V+PSR NC
Sbjct: 73  TDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQLDGLPSGTIVTTVKPSRRNC 132

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EES + WV+G+++Q + LRLR+VE GE+E QLQWID+PGS+GL
Sbjct: 133 LAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLPGSKGL 177

[Close]

BLAST of Lsi05G003290 vs. TAIR10
Match: AT1G73580.1 (AT1G73580.1 Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-63
Identity = 104/165 (63.03%), Postives = 141/165 (85.45%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           M+NL+G+LR+ V RGVNLAVRDV SSDPYV+ K+G+QKLKT+VVKQN+NP+W EDL+ ++
Sbjct: 4   MDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTV 63

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DPN+P+ ++VYD D FS DDKMGDAE D++P++EA++M L+ LP GTII+ + PSR NC
Sbjct: 64  TDPNLPLTLIVYDHDFFSKDDKMGDAEIDLKPYIEALRMELSGLPDGTIISTIGPSRGNC 123

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EES I W+N +++Q + LRLRNVE GE+E++LQWID+PGS+GL
Sbjct: 124 LAEESYIRWINDRIVQHICLRLRNVERGEVEIELQWIDLPGSKGL 168

[Close]

BLAST of Lsi05G003290 vs. TAIR10
Match: AT1G66360.1 (AT1G66360.1 Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-62
Identity = 108/164 (65.85%), Postives = 138/164 (84.15%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MEN++GLLR+HV RGVNLA+RD  SSDPYVI +MGKQKL+TRV+K+N+N EWNEDLTLS+
Sbjct: 1   MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKM--RLNNLPSGTIITKVQPSRE 120
            DP +PV ++VYDRD FS DDKMGDA F + PF+EA+++  +L  LP GT+I K+Q SR+
Sbjct: 61  TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFLEAIRIQNQLGGLPEGTVIMKIQASRQ 120

Query: 121 NCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGS 163
           NCLSEES IVW  G+++Q MFL+L+NVE GEIELQL+WID+ G+
Sbjct: 121 NCLSEESKIVWHKGKIVQNMFLKLQNVERGEIELQLEWIDVSGA 164

[Close]

BLAST of Lsi05G003290 vs. TAIR10
Match: AT1G48590.2 (AT1G48590.2 Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 235.0 bits (598), Expect = 3.4e-62
Identity = 106/161 (65.84%), Postives = 138/161 (85.71%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           M++L+GLLRI + RGVNLAVRD+ SSDPYV+ KM KQKLKTRV+ +N+NPEWNEDLTLS+
Sbjct: 37  MDSLLGLLRIRIKRGVNLAVRDLNSSDPYVVVKMAKQKLKTRVIYKNVNPEWNEDLTLSV 96

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DPN+ V + VYD D F+ DDKMGDAEF ++PF+ A+KM L++LPSGTI+T VQPSR+NC
Sbjct: 97  SDPNLTVLLTVYDYDTFTKDDKMGDAEFGIKPFVNALKMHLHDLPSGTIVTTVQPSRDNC 156

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPG 162
           L+EES ++W +G+++Q + LRLR+VE GE+E QLQWID+PG
Sbjct: 157 LAEESRVIWSDGKLVQDIVLRLRHVECGEVEAQLQWIDLPG 197

[Close]

BLAST of Lsi05G003290 vs. TAIR10
Match: AT5G37740.2 (AT5G37740.2 Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 226.9 bits (577), Expect = 9.3e-60
Identity = 109/178 (61.24%), Postives = 138/178 (77.53%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQ----------KLKTRVVKQNINP 60
           MENL+GLLRIHV RGVNLA+RD+ SSDPY++   GKQ          KLKTRVVK ++NP
Sbjct: 1   MENLVGLLRIHVKRGVNLAIRDISSSDPYIVVHCGKQNLMRLLNCWSKLKTRVVKHSVNP 60

Query: 61  EWNEDLTLSIQDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLN---NLPSG 120
           EWN+DLTLS+ DPN+P+ + VYD DL S DDKMG+AEF + PF+EA+K        LP+G
Sbjct: 61  EWNDDLTLSVTDPNLPIKLTVYDYDLLSADDKMGEAEFHIGPFIEAIKFAHQLGPGLPNG 120

Query: 121 TIITKVQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           TII K++PSR+NCLSE S IV   G+++Q MFLRL++VE GE+ELQL+WID+PGSRG+
Sbjct: 121 TIIKKIEPSRKNCLSESSHIVLNQGKIVQNMFLRLQHVECGEVELQLEWIDVPGSRGI 178

[Close]

BLAST of Lsi05G003290 vs. NCBI nr
Match: gi|659114430|ref|XP_008457050.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Cucumis melo])

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 157/165 (95.15%), Postives = 163/165 (98.79%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENLMGLLRIHVFRGVNLAVRDV SSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI
Sbjct: 1   MENLMGLLRIHVFRGVNLAVRDVCSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
           QDP++PVNVLVYD+DLFSLDDKMGDAEFDVRPF+EAVKMRLNNLPSGTII K+QPSRENC
Sbjct: 61  QDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           LSEESCI+WVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL
Sbjct: 121 LSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165

[Close]

BLAST of Lsi05G003290 vs. NCBI nr
Match: gi|449456194|ref|XP_004145835.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-85
Identity = 157/165 (95.15%), Postives = 163/165 (98.79%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENLMGLLRIHVFRGVNLAVRDV SSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI
Sbjct: 1   MENLMGLLRIHVFRGVNLAVRDVSSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
           QDP++PVNVLVYD+DLFSLDDKMGDAEFDVRPF+EAVKMRLNNLPSGTII K+QPSRENC
Sbjct: 61  QDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           LSEESCI+WVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL
Sbjct: 121 LSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165

[Close]

BLAST of Lsi05G003290 vs. NCBI nr
Match: gi|566171339|ref|XP_006383322.1| (hypothetical protein POPTR_0005s14500g [Populus trichocarpa])

HSP 1 Score: 283.1 bits (723), Expect = 3.1e-73
Identity = 129/165 (78.18%), Postives = 154/165 (93.33%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENL+GLLRIHV RG++LA+RD+ SSDPYV+ KMGKQKLKTRV+KQNINPEWN+DLTLS+
Sbjct: 1   MENLLGLLRIHVTRGIDLAIRDIRSSDPYVVVKMGKQKLKTRVIKQNINPEWNDDLTLSV 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DPN+PV + VYD+D FSLDDKMGDAEFD+R F+E VKM+L+NLP+GTII+K+QPSRENC
Sbjct: 61  VDPNLPVLIKVYDKDTFSLDDKMGDAEFDIRQFIEVVKMQLDNLPTGTIISKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EESCIVW NG+VIQ MFLRLR+VESGE+ELQL+WIDIPGSRG+
Sbjct: 121 LAEESCIVWANGKVIQNMFLRLRHVESGEVELQLEWIDIPGSRGM 165

[Close]

BLAST of Lsi05G003290 vs. NCBI nr
Match: gi|224077286|ref|XP_002305199.1| (hypothetical protein POPTR_0004s08840g [Populus trichocarpa])

HSP 1 Score: 280.0 bits (715), Expect = 2.6e-72
Identity = 130/165 (78.79%), Postives = 150/165 (90.91%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MENLMGLLRIHV RGVNLAVRDV SSDPYV+ KMGKQKLKTRV+KQNINPEWN+DLTLSI
Sbjct: 1   MENLMGLLRIHVIRGVNLAVRDVCSSDPYVVVKMGKQKLKTRVIKQNINPEWNDDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
            DP +PV + VYD+D FSLDDKMGDAEFD+  F+E VKMRL+NLPSGTII K+QPSRENC
Sbjct: 61  VDPKLPVLIRVYDKDTFSLDDKMGDAEFDISQFIEVVKMRLDNLPSGTIIRKIQPSRENC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L+EESCIVW  G+++Q +FLRL++VE+GE+ELQL+WIDIPGSRGL
Sbjct: 121 LAEESCIVWATGKLVQNLFLRLKHVETGEVELQLEWIDIPGSRGL 165

[Close]

BLAST of Lsi05G003290 vs. NCBI nr
Match: gi|802634011|ref|XP_012077788.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas])

HSP 1 Score: 279.6 bits (714), Expect = 3.4e-72
Identity = 126/165 (76.36%), Postives = 153/165 (92.73%), Query Frame = 1


Query: 1   MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60
           MEN++GLLRIHV RG+NLAVRDV+SSDPYV+ KMGKQKLKTRVVKQN+NPEWNEDLTLSI
Sbjct: 1   MENILGLLRIHVHRGINLAVRDVMSSDPYVVVKMGKQKLKTRVVKQNVNPEWNEDLTLSI 60

Query: 61  QDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENC 120
           ++PN+P+ ++VYD+D FS DDKMGDAEFD+RPF+EAVKMRL +LPSGTIIT++QP+R+NC
Sbjct: 61  ENPNLPIKIVVYDKDTFSRDDKMGDAEFDIRPFLEAVKMRLEDLPSGTIITRIQPNRQNC 120

Query: 121 LSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 166
           L++ES I+WV G+VIQ + LRLRNVE GE+ELQLQWID+PG RGL
Sbjct: 121 LADESQIIWVEGKVIQNIILRLRNVECGEVELQLQWIDVPGIRGL 165

The following BLAST results are available for this feature:

BLAST of Lsi05G003290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CAR4_ARATH	2.2e-63	65.45	Protein C2-DOMAIN ABA-RELATED 4 OS=Arabidopsis thaliana GN=CAR4 PE=1 SV=1	[more]
CAR3_ARATH	2.5e-62	63.03	Protein C2-DOMAIN ABA-RELATED 3 OS=Arabidopsis thaliana GN=CAR3 PE=3 SV=1	[more]
CAR2_ARATH	3.6e-61	65.85	Protein C2-DOMAIN ABA-RELATED 2 OS=Arabidopsis thaliana GN=CAR2 PE=3 SV=1	[more]
CAR1_ARATH	6.1e-61	64.88	Protein C2-DOMAIN ABA-RELATED 1 OS=Arabidopsis thaliana GN=CAR1 PE=1 SV=1	[more]
CAR5_ARATH	6.1e-61	65.84	Protein C2-DOMAIN ABA-RELATED 5 OS=Arabidopsis thaliana GN=CAR5 PE=2 SV=1	[more]

BLAST of Lsi05G003290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L753_CUCSA	1.4e-85	95.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G316280 PE=4 SV=1	[more]
U5GFU5_POPTR	2.2e-73	78.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14500g PE=4 SV=1	[more]
A9P958_POPTR	1.8e-72	78.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08840g PE=2 SV=1	[more]
A0A067KDT0_JATCU	2.4e-72	76.36	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13428 PE=4 SV=1	[more]
V4SXS8_9ROSI	5.3e-72	76.97	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012950mg PE=4 SV=1	[more]

BLAST of Lsi05G003290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17980.1	1.3e-64	65.45	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G73580.1	1.4e-63	63.03	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G66360.1	2.0e-62	65.85	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G48590.2	3.4e-62	65.84	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT5G37740.2	9.3e-60	61.24	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]

BLAST of Lsi05G003290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114430\|ref\|XP_008457050.1\|	1.6e-85	95.15	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Cuc...	[more]
gi\|449456194\|ref\|XP_004145835.1\|	2.1e-85	95.15	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Cuc...	[more]
gi\|566171339\|ref\|XP_006383322.1\|	3.1e-73	78.18	hypothetical protein POPTR_0005s14500g [Populus trichocarpa]	[more]
gi\|224077286\|ref\|XP_002305199.1\|	2.6e-72	78.79	hypothetical protein POPTR_0004s08840g [Populus trichocarpa]	[more]
gi\|802634011\|ref\|XP_012077788.1\|	3.4e-72	76.36	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jat...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003290.1	Lsi05G003290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000008	C2 domain	GENE3D	G3DSA:2.60.40.150		coord: 5..95 score: 2.5E-25coord: 133..157 score: 2.5
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 6..93 score: 1.0
IPR000008	C2 domain	SMART	SM00239	C2_3c	coord: 7..102 score: 1.1
IPR000008	C2 domain	PROFILE	PS50004	C2	coord: 8..87 score: 13
IPR000008	C2 domain	unknown	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 2..91 score: 1.25
None	No IPR available	PANTHER	PTHR23180	CENTAURIN/ARF	coord: 1..160 score: 1.5
None	No IPR available	PANTHER	PTHR23180:SF285	SUBFAMILY NOT NAMED	coord: 1..160 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003290	Csa3G316280	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003290	CSPI03G21490	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003290	Cucsa.375420	Cucumber (Gy14) v1	cgylsiB607
Lsi05G003290	CmaCh14G008370	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003290	CmaCh01G003630	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003290	CmoCh14G008520	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003290	CmoCh01G003800	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003290	Cla013190	Watermelon (97103) v1	lsiwmB361
Lsi05G003290	MELO3C020261	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003290	ClCG05G011210	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003290	MELO3C020261.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003290	Cla97C05G093390	Watermelon (97103) v2	lsiwmbB329
Lsi05G003290	Bhi01G001513	Wax gourd	lsiwgoB447
Lsi05G003290	Cp4.1LG03g05920	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003290	CsGy3G020770	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003290	Carg26922	Silver-seed gourd	carlsiB464
Lsi05G003290	Carg07450	Silver-seed gourd	carlsiB700
Lsi05G003290	CsaV3_3G021200	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003290	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003290	Cucumber (Gy14) v2	cgyblsiB192